Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:137542889-138443054

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D3Mit349 3 137546613 to 137546724 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 349
Gm4861 3 137550045 to 137552622 2577 - lincRNA gene predicted gene 4861
Tssr35853 3 137552657 to 137552665 8 - TSS region transcription start site region 35853
Tssr35854 3 137564383 to 137564425 42 - TSS region transcription start site region 35854
Gm22468 3 137621474 to 137621593 119 + miRNA gene predicted gene, 22468
Cpgi13864 3 137623520 to 137624347 827 CpG island CpG island 13864
Ddit4l 3 137623672 to 137628332 4660 + protein coding gene DNA-damage-inducible transcript 4-like
Tssr31903 3 137623716 to 137623727 11 + TSS region transcription start site region 31903
Tssr31904 3 137623728 to 137623756 28 + TSS region transcription start site region 31904
Tssr31905 3 137623769 to 137623789 20 + TSS region transcription start site region 31905
Tssr31906 3 137624031 to 137624062 31 + TSS region transcription start site region 31906
Tssr31907 3 137624203 to 137624210 7 + TSS region transcription start site region 31907
Tssr31908 3 137626630 to 137626636 6 + TSS region transcription start site region 31908
Gm30946 3 137644058 to 137644781 723 - pseudogene predicted gene, 30946
D3Mit193 3 137657629 to 137657778 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 193
Gm21962 3 137671524 to 137672540 1016 + protein coding gene predicted gene, 21962
Gm42610 3 137690987 to 137699128 8141 + lincRNA gene predicted gene 42610
Gm25080 3 137715658 to 137715764 106 + snRNA gene predicted gene, 25080
D3Mit350 3 137747149 to 137747247 98 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 350
Ctrq2 3 137747247 to 89232660 -48514587 QTL C. trachomatis resistance QTL 2
Cpgi13865 3 137752972 to 137753129 157 CpG island CpG island 13865
Tssr31909 3 137780409 to 137780450 41 + TSS region transcription start site region 31909
Mir6380 3 137783535 to 137783615 80 - miRNA gene microRNA 6380
Gm31678 3 137795269 to 137802639 7370 - lincRNA gene predicted gene, 31678
Tssr31910 3 137833915 to 137833929 14 + TSS region transcription start site region 31910
Tssr31911 3 137838494 to 137838499 5 + TSS region transcription start site region 31911
Gm43403 3 137863704 to 137864399 695 - antisense lncRNA gene predicted gene 43403
Cpgi13866 3 137863968 to 137865828 1860 CpG island CpG island 13866
Tssr35855 3 137864317 to 137864331 14 - TSS region transcription start site region 35855
H2afz 3 137864487 to 137866922 2435 + protein coding gene H2A histone family, member Z
Tssr31912 3 137864503 to 137864525 22 + TSS region transcription start site region 31912
Tssr31913 3 137864535 to 137864564 29 + TSS region transcription start site region 31913
Tssr31914 3 137864573 to 137864591 18 + TSS region transcription start site region 31914
Tssr31915 3 137865059 to 137865121 62 + TSS region transcription start site region 31915
Tssr31916 3 137865868 to 137865871 3 + TSS region transcription start site region 31916
Tssr31917 3 137865900 to 137865938 38 + TSS region transcription start site region 31917
Cpgi13867 3 137867351 to 137868384 1033 CpG island CpG island 13867
Dnajb14 3 137867675 to 137916557 48882 + protein coding gene DnaJ heat shock protein family (Hsp40) member B14
Tssr31918 3 137867758 to 137867797 39 + TSS region transcription start site region 31918
Tssr31919 3 137867807 to 137867834 27 + TSS region transcription start site region 31919
Tssr31920 3 137867859 to 137867876 17 + TSS region transcription start site region 31920
Tssr31921 3 137867878 to 137867913 35 + TSS region transcription start site region 31921
Tssr31922 3 137867958 to 137867964 6 + TSS region transcription start site region 31922
Tssr31923 3 137868062 to 137868069 7 + TSS region transcription start site region 31923
Tssr31924 3 137868077 to 137868117 40 + TSS region transcription start site region 31924
Tssr31925 3 137868121 to 137868129 8 + TSS region transcription start site region 31925
Gm40155 3 137875925 to 137878126 2201 - antisense lncRNA gene predicted gene, 40155
Tssr35856 3 137878108 to 137878120 12 - TSS region transcription start site region 35856
Tssr35857 3 137878123 to 137878134 11 - TSS region transcription start site region 35857
Tssr35858 3 137878139 to 137878146 7 - TSS region transcription start site region 35858
Tssr31926 3 137882662 to 137882665 3 + TSS region transcription start site region 31926
Tssr31927 3 137882813 to 137882820 7 + TSS region transcription start site region 31927
Gm43088 3 137897144 to 137899490 2346 + unclassified gene predicted gene 43088
Gm15460 3 137905009 to 137905399 390 + pseudogene predicted gene 15460
Tssr31928 3 137908463 to 137908479 16 + TSS region transcription start site region 31928
Tssr31929 3 137910670 to 137910683 13 + TSS region transcription start site region 31929
Gm25920 3 137912990 to 137913088 98 - snRNA gene predicted gene, 25920
Tssr31930 3 137914934 to 137914947 13 + TSS region transcription start site region 31930
Gm43689 3 137918019 to 137918445 426 - lincRNA gene predicted gene 43689
Cpgi13868 3 137918380 to 137918886 506 CpG island CpG island 13868
Tssr35859 3 137918400 to 137918432 32 - TSS region transcription start site region 35859
Tssr31931 3 137918470 to 137918509 39 + TSS region transcription start site region 31931
Tssr31932 3 137918536 to 137918547 11 + TSS region transcription start site region 31932
Tssr31933 3 137918550 to 137918573 23 + TSS region transcription start site region 31933
Lamtor3 3 137918555 to 137928762 10207 + protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
Tssr31934 3 137918864 to 137918867 3 + TSS region transcription start site region 31934
Tssr35860 3 137919080 to 137919086 6 - TSS region transcription start site region 35860
Dapp1 3 137931007 to 137981545 50538 - protein coding gene dual adaptor for phosphotyrosine and 3-phosphoinositides 1
Cpgi13869 3 137954546 to 137954790 244 CpG island CpG island 13869
Tssr35861 3 137954728 to 137954736 8 - TSS region transcription start site region 35861
Tssr35862 3 137954739 to 137954758 19 - TSS region transcription start site region 35862
Tssr35863 3 137954774 to 137954775 1 - TSS region transcription start site region 35863
Tssr35864 3 137965992 to 137966001 9 - TSS region transcription start site region 35864
Tssr35865 3 137969636 to 137969640 4 - TSS region transcription start site region 35865
Tssr35866 3 137981483 to 137981494 11 - TSS region transcription start site region 35866
Tssr35867 3 137981505 to 137981522 17 - TSS region transcription start site region 35867
Tssr35868 3 137981523 to 137981542 19 - TSS region transcription start site region 35868
Tssr35869 3 137981548 to 137981564 16 - TSS region transcription start site region 35869
Cpgi13870 3 137982278 to 137982584 306 CpG island CpG island 13870
D3Ertd211e 3 137989076 to 137989285 209 DNA segment DNA segment, Chr 3, ERATO Doi 211, expressed
D3Mit111 3 137992889 to 137993054 165 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 111
Tssr35870 3 137997775 to 137997779 4 - TSS region transcription start site region 35870
Tssr31935 3 138000869 to 138000909 40 + TSS region transcription start site region 31935
Gm19708 3 138000939 to 138016044 15105 + lincRNA gene predicted gene, 19708
Tssr35871 3 138002705 to 138002724 19 - TSS region transcription start site region 35871
Gm5105 3 138048761 to 138067388 18627 - protein coding gene predicted gene 5105
Tssr31936 3 138061915 to 138061920 5 + TSS region transcription start site region 31936
1110002E22Rik 3 138065052 to 138081506 16454 + protein coding gene RIKEN cDNA 1110002E22 gene
Tssr31937 3 138065057 to 138065078 21 + TSS region transcription start site region 31937
Tssr31938 3 138065143 to 138065156 13 + TSS region transcription start site region 31938
Tssr31939 3 138065169 to 138065197 28 + TSS region transcription start site region 31939
Alpq6 3 138066317 to 138066317 0 QTL alcohol preference QTL 6
Tssr31940 3 138066625 to 138066648 23 + TSS region transcription start site region 31940
Tssr31941 3 138066685 to 138066704 19 + TSS region transcription start site region 31941
Mttp 3 138089855 to 138143461 53606 - protein coding gene microsomal triglyceride transfer protein
Tssr35872 3 138090230 to 138090243 13 - TSS region transcription start site region 35872
Tssr35873 3 138090324 to 138090333 9 - TSS region transcription start site region 35873
Tssr35874 3 138091039 to 138091070 31 - TSS region transcription start site region 35874
Tssr35875 3 138091131 to 138091155 24 - TSS region transcription start site region 35875
Gm43691 3 138103916 to 138114717 10801 + antisense lncRNA gene predicted gene 43691
Tssr31942 3 138107239 to 138107273 34 + TSS region transcription start site region 31942
Tssr31943 3 138109064 to 138109092 28 + TSS region transcription start site region 31943
Tssr1060 3 138112469 to 138112471 2 + TSS region transcription start site region 1060
Tssr35876 3 138114140 to 138114159 19 - TSS region transcription start site region 35876
Tssr35877 3 138131332 to 138131355 23 - TSS region transcription start site region 35877
Tssr35878 3 138131356 to 138131381 25 - TSS region transcription start site region 35878
Tssr35879 3 138131389 to 138131400 11 - TSS region transcription start site region 35879
Cpgi13871 3 138143263 to 138144189 926 CpG island CpG island 13871
Tssr35880 3 138143352 to 138143396 44 - TSS region transcription start site region 35880
Tssr31944 3 138143429 to 138143477 48 + TSS region transcription start site region 31944
Tssr31945 3 138143483 to 138143496 13 + TSS region transcription start site region 31945
Trmt10a 3 138143517 to 138159821 16304 + protein coding gene tRNA methyltransferase 10A
Tssr35881 3 138143688 to 138143713 25 - TSS region transcription start site region 35881
Tssr35882 3 138143717 to 138143732 15 - TSS region transcription start site region 35882
Tssr31946 3 138143822 to 138143843 21 + TSS region transcription start site region 31946
Tssr31947 3 138143846 to 138143886 40 + TSS region transcription start site region 31947
Tssr31948 3 138143888 to 138143919 31 + TSS region transcription start site region 31948
Tssr31949 3 138143922 to 138143937 15 + TSS region transcription start site region 31949
4930579F01Rik 3 138164078 to 138193825 29747 - protein coding gene RIKEN cDNA 4930579F01 gene
Cpgi13872 3 138186040 to 138186472 432 CpG island CpG island 13872
Tssr35883 3 138186700 to 138186732 32 - TSS region transcription start site region 35883
Tssr35884 3 138186741 to 138186748 7 - TSS region transcription start site region 35884
Tssr35885 3 138193824 to 138193851 27 - TSS region transcription start site region 35885
0610031O16Rik 3 138210717 to 138239663 28946 - antisense lncRNA gene RIKEN cDNA 0610031O16 gene
D3Ertd425e 3 138212167 to 138212373 206 DNA segment DNA segment, Chr 3, ERATO Doi 425, expressed
Adh7 3 138217760 to 138233382 15622 + protein coding gene alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
Tssr31950 3 138217762 to 138217777 15 + TSS region transcription start site region 31950
Tssr31951 3 138217789 to 138217803 14 + TSS region transcription start site region 31951
Tssr31952 3 138217814 to 138217828 14 + TSS region transcription start site region 31952
Tssr31953 3 138217838 to 138217847 9 + TSS region transcription start site region 31953
Tssr35886 3 138239583 to 138239605 22 - TSS region transcription start site region 35886
Tssr35887 3 138239627 to 138239645 18 - TSS region transcription start site region 35887
Tssr35888 3 138239658 to 138239665 7 - TSS region transcription start site region 35888
Tssr35889 3 138239670 to 138239685 15 - TSS region transcription start site region 35889
Gm40156 3 138261047 to 138274981 13934 + lncRNA gene predicted gene, 40156
Tssr31954 3 138277489 to 138277495 6 + TSS region transcription start site region 31954
Tssr31955 3 138277642 to 138277659 17 + TSS region transcription start site region 31955
Adh1 3 138277645 to 138290691 13046 + protein coding gene alcohol dehydrogenase 1 (class I)
Tssr31956 3 138277748 to 138277757 9 + TSS region transcription start site region 31956
Tssr31957 3 138277765 to 138277777 12 + TSS region transcription start site region 31957
Tssr31958 3 138279784 to 138279808 24 + TSS region transcription start site region 31958
Tssr31959 3 138280405 to 138280434 29 + TSS region transcription start site region 31959
Tssr31960 3 138280457 to 138280470 13 + TSS region transcription start site region 31960
Tssr31961 3 138282626 to 138282646 20 + TSS region transcription start site region 31961
Tssr35890 3 138282723 to 138282743 20 - TSS region transcription start site region 35890
Tssr31962 3 138282765 to 138282776 11 + TSS region transcription start site region 31962
Tssr31963 3 138282785 to 138282805 20 + TSS region transcription start site region 31963
Tssr31964 3 138285274 to 138285309 35 + TSS region transcription start site region 31964
Tssr31965 3 138286854 to 138286872 18 + TSS region transcription start site region 31965
Tssr31966 3 138286904 to 138286926 22 + TSS region transcription start site region 31966
Tssr31967 3 138288734 to 138288777 43 + TSS region transcription start site region 31967
Tssr31968 3 138288780 to 138288825 45 + TSS region transcription start site region 31968
Tssr31969 3 138288833 to 138288840 7 + TSS region transcription start site region 31969
Tssr31970 3 138288844 to 138288856 12 + TSS region transcription start site region 31970
Tssr31971 3 138289798 to 138289818 20 + TSS region transcription start site region 31971
Tssr35891 3 138289866 to 138289883 17 - TSS region transcription start site region 35891
Tssr31972 3 138290568 to 138290579 11 + TSS region transcription start site region 31972
Tssr31973 3 138290594 to 138290630 36 + TSS region transcription start site region 31973
Gm16559 3 138302493 to 138307031 4538 - antisense lncRNA gene predicted gene 16559
Tssr31974 3 138313279 to 138313293 14 + TSS region transcription start site region 31974
Adh6a 3 138313286 to 138331134 17848 + protein coding gene alcohol dehydrogenase 6A (class V)
Cpgi13873 3 138325068 to 138325220 152 CpG island CpG island 13873
Adh6b 3 138341775 to 138358861 17086 + protein coding gene alcohol dehydrogenase 6B (class V)
Tssr31975 3 138341933 to 138341938 5 + TSS region transcription start site region 31975
Tssr31976 3 138341947 to 138341961 14 + TSS region transcription start site region 31976
Tssr31977 3 138341968 to 138341981 13 + TSS region transcription start site region 31977
Tssr31978 3 138342284 to 138342300 16 + TSS region transcription start site region 31978
Tssr31979 3 138342792 to 138342811 19 + TSS region transcription start site region 31979
Gm23467 3 138343138 to 138343296 158 + snRNA gene predicted gene, 23467
Adh6-ps1 3 138374121 to 138388291 14170 + pseudogene alcohol dehydrogenase 6 (class V), pseudogene 1
Tssr31980 3 138374146 to 138374163 17 + TSS region transcription start site region 31980
Tssr31981 3 138415460 to 138415468 8 + TSS region transcription start site region 31981
Tssr31982 3 138415484 to 138415510 26 + TSS region transcription start site region 31982
Adh4 3 138415497 to 138430892 15395 + protein coding gene alcohol dehydrogenase 4 (class II), pi polypeptide
Tssr31983 3 138432457 to 138432460 3 + TSS region transcription start site region 31983
Cpgi13874 3 138442543 to 138443606 1063 CpG island CpG island 13874