Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:136791147-137891154

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
am3 3 125522368 to 136996870 11474502 heritable phenotypic marker absence of third molars
Ppp3ca 3 136670124 to 136937727 267603 + protein coding gene protein phosphatase 3, catalytic subunit, alpha isoform
Gm44327 3 136798262 to 136798378 116 - miRNA gene predicted gene, 44327
Tssr31887 3 136805300 to 136805318 18 + TSS region transcription start site region 31887
D3Mit146 3 136841004 to 136841138 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 146
Cpgi13863 3 136902883 to 136903160 277 CpG island CpG island 13863
Tssr31888 3 136903018 to 136903024 6 + TSS region transcription start site region 31888
Tssr31889 3 136903027 to 136903069 42 + TSS region transcription start site region 31889
Tssr31890 3 136903075 to 136903089 14 + TSS region transcription start site region 31890
Tssr31891 3 136935250 to 136935261 11 + TSS region transcription start site region 31891
Tssr31892 3 136935517 to 136935544 27 + TSS region transcription start site region 31892
Tssr31893 3 136935571 to 136935591 20 + TSS region transcription start site region 31893
Tssr31894 3 136935694 to 136935741 47 + TSS region transcription start site region 31894
Tssr35851 3 136935774 to 136935782 8 - TSS region transcription start site region 35851
1700006H20Rik 3 136942557 to 136955087 12530 - lncRNA gene RIKEN cDNA 1700006H20 gene
Gm43357 3 136943237 to 136946544 3307 - lincRNA gene predicted gene 43357
Gm9409 3 136948605 to 136948920 315 + pseudogene predicted gene 9409
Gm43356 3 136952790 to 136955093 2303 - lincRNA gene predicted gene 43356
Tssr31895 3 136955274 to 136955284 10 + TSS region transcription start site region 31895
D3Mit125 3 136996728 to 136996870 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 125
D3Mit218 3 137035503 to 137035643 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 218
Gm26107 3 137067892 to 137067998 106 + snRNA gene predicted gene, 26107
Lprm2 3 137073096 to 137073283 187 QTL lymphoproliferation modifier 2
D3Mit16 3 137073096 to 137073283 187 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 16
Tssr31896 3 137287892 to 137287897 5 + TSS region transcription start site region 31896
Gm567 3 137289623 to 137299995 10372 + lincRNA gene predicted gene 567
Tssr35852 3 137336127 to 137336130 3 - TSS region transcription start site region 35852
Tssr31897 3 137341032 to 137341046 14 + TSS region transcription start site region 31897
Emcn 3 137341061 to 137431069 90008 + protein coding gene endomucin
Tssr31898 3 137341076 to 137341095 19 + TSS region transcription start site region 31898
Tssr31899 3 137341103 to 137341146 43 + TSS region transcription start site region 31899
Tssr31900 3 137341147 to 137341154 7 + TSS region transcription start site region 31900
Tssr31901 3 137341179 to 137341190 11 + TSS region transcription start site region 31901
Tssr31902 3 137341212 to 137341223 11 + TSS region transcription start site region 31902
Gm38650 3 137349361 to 137369628 20267 - lncRNA gene predicted gene, 38650
D3Mit349 3 137546613 to 137546724 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 349
Gm4861 3 137550045 to 137552622 2577 - lincRNA gene predicted gene 4861
Tssr35853 3 137552657 to 137552665 8 - TSS region transcription start site region 35853
Tssr35854 3 137564383 to 137564425 42 - TSS region transcription start site region 35854
Gm22468 3 137621474 to 137621593 119 + miRNA gene predicted gene, 22468
Cpgi13864 3 137623520 to 137624347 827 CpG island CpG island 13864
Ddit4l 3 137623672 to 137628332 4660 + protein coding gene DNA-damage-inducible transcript 4-like
Tssr31903 3 137623716 to 137623727 11 + TSS region transcription start site region 31903
Tssr31904 3 137623728 to 137623756 28 + TSS region transcription start site region 31904
Tssr31905 3 137623769 to 137623789 20 + TSS region transcription start site region 31905
Tssr31906 3 137624031 to 137624062 31 + TSS region transcription start site region 31906
Tssr31907 3 137624203 to 137624210 7 + TSS region transcription start site region 31907
Tssr31908 3 137626630 to 137626636 6 + TSS region transcription start site region 31908
Gm30946 3 137644058 to 137644781 723 - pseudogene predicted gene, 30946
D3Mit193 3 137657629 to 137657778 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 193
Gm21962 3 137671524 to 137672540 1016 + protein coding gene predicted gene, 21962
Gm42610 3 137690987 to 137699128 8141 + lincRNA gene predicted gene 42610
Gm25080 3 137715658 to 137715764 106 + snRNA gene predicted gene, 25080
D3Mit350 3 137747149 to 137747247 98 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 350
Ctrq2 3 137747247 to 89232660 -48514587 QTL C. trachomatis resistance QTL 2
Cpgi13865 3 137752972 to 137753129 157 CpG island CpG island 13865
Tssr31909 3 137780409 to 137780450 41 + TSS region transcription start site region 31909
Mir6380 3 137783535 to 137783615 80 - miRNA gene microRNA 6380
Gm31678 3 137795269 to 137802639 7370 - lincRNA gene predicted gene, 31678
Tssr31910 3 137833915 to 137833929 14 + TSS region transcription start site region 31910
Tssr31911 3 137838494 to 137838499 5 + TSS region transcription start site region 31911
Gm43403 3 137863704 to 137864399 695 - antisense lncRNA gene predicted gene 43403
Cpgi13866 3 137863968 to 137865828 1860 CpG island CpG island 13866
Tssr35855 3 137864317 to 137864331 14 - TSS region transcription start site region 35855
H2afz 3 137864487 to 137866922 2435 + protein coding gene H2A histone family, member Z
Tssr31912 3 137864503 to 137864525 22 + TSS region transcription start site region 31912
Tssr31913 3 137864535 to 137864564 29 + TSS region transcription start site region 31913
Tssr31914 3 137864573 to 137864591 18 + TSS region transcription start site region 31914
Tssr31915 3 137865059 to 137865121 62 + TSS region transcription start site region 31915
Tssr31916 3 137865868 to 137865871 3 + TSS region transcription start site region 31916
Tssr31917 3 137865900 to 137865938 38 + TSS region transcription start site region 31917
Cpgi13867 3 137867351 to 137868384 1033 CpG island CpG island 13867
Dnajb14 3 137867675 to 137916557 48882 + protein coding gene DnaJ heat shock protein family (Hsp40) member B14
Tssr31918 3 137867758 to 137867797 39 + TSS region transcription start site region 31918
Tssr31919 3 137867807 to 137867834 27 + TSS region transcription start site region 31919
Tssr31920 3 137867859 to 137867876 17 + TSS region transcription start site region 31920
Tssr31921 3 137867878 to 137867913 35 + TSS region transcription start site region 31921
Tssr31922 3 137867958 to 137867964 6 + TSS region transcription start site region 31922
Tssr31923 3 137868062 to 137868069 7 + TSS region transcription start site region 31923
Tssr31924 3 137868077 to 137868117 40 + TSS region transcription start site region 31924
Tssr31925 3 137868121 to 137868129 8 + TSS region transcription start site region 31925
Gm40155 3 137875925 to 137878126 2201 - antisense lncRNA gene predicted gene, 40155
Tssr35856 3 137878108 to 137878120 12 - TSS region transcription start site region 35856
Tssr35857 3 137878123 to 137878134 11 - TSS region transcription start site region 35857
Tssr35858 3 137878139 to 137878146 7 - TSS region transcription start site region 35858
Tssr31926 3 137882662 to 137882665 3 + TSS region transcription start site region 31926
Tssr31927 3 137882813 to 137882820 7 + TSS region transcription start site region 31927