Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:135660774-138210782

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285 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ogrq1 3 110177041 to 136010051 25833010 QTL overall growth rate QTL 1
Pwbwq6 3 110177041 to 136010051 25833010 QTL post-weaning body weight QTL 6
Pwbwq7 3 110177041 to 136010051 25833010 QTL post-weaning body weight QTL 7
am3 3 125522368 to 136996870 11474502 heritable phenotypic marker absence of third molars
Nfkb1 3 135584655 to 135691547 106892 - protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
Tssr35804 3 135663294 to 135663313 19 - TSS region transcription start site region 35804
Tssr35805 3 135665082 to 135665090 8 - TSS region transcription start site region 35805
Tssr35806 3 135665093 to 135665100 7 - TSS region transcription start site region 35806
Tssr35807 3 135665113 to 135665125 12 - TSS region transcription start site region 35807
Tssr35808 3 135665154 to 135665166 12 - TSS region transcription start site region 35808
Tssr35809 3 135665191 to 135665198 7 - TSS region transcription start site region 35809
Tssr35810 3 135665216 to 135665271 55 - TSS region transcription start site region 35810
Tssr35811 3 135665283 to 135665296 13 - TSS region transcription start site region 35811
Tssr35812 3 135665302 to 135665310 8 - TSS region transcription start site region 35812
Tssr35813 3 135665343 to 135665354 11 - TSS region transcription start site region 35813
Tssr35814 3 135665367 to 135665378 11 - TSS region transcription start site region 35814
Tssr35815 3 135665398 to 135665407 9 - TSS region transcription start site region 35815
Tssr35816 3 135665415 to 135665427 12 - TSS region transcription start site region 35816
Tssr35817 3 135665485 to 135665499 14 - TSS region transcription start site region 35817
Tssr35818 3 135665513 to 135665524 11 - TSS region transcription start site region 35818
Tssr35819 3 135665545 to 135665555 10 - TSS region transcription start site region 35819
Tssr35820 3 135667814 to 135667821 7 - TSS region transcription start site region 35820
Tssr35821 3 135674592 to 135674634 42 - TSS region transcription start site region 35821
Tssr35822 3 135687885 to 135687928 43 - TSS region transcription start site region 35822
Tssr31841 3 135689120 to 135689131 11 + TSS region transcription start site region 31841
Tssr31842 3 135689139 to 135689150 11 + TSS region transcription start site region 31842
Tssr31843 3 135689151 to 135689168 17 + TSS region transcription start site region 31843
Tssr31844 3 135689173 to 135689203 30 + TSS region transcription start site region 31844
Tssr31845 3 135689234 to 135689243 9 + TSS region transcription start site region 31845
Tssr35823 3 135689255 to 135689268 13 - TSS region transcription start site region 35823
Tssr35824 3 135689778 to 135689782 4 - TSS region transcription start site region 35824
Cpgi13858 3 135690654 to 135691980 1326 CpG island CpG island 13858
Tssr35825 3 135691139 to 135691256 117 - TSS region transcription start site region 35825
Tssr35826 3 135691265 to 135691271 6 - TSS region transcription start site region 35826
Tssr35827 3 135691274 to 135691313 39 - TSS region transcription start site region 35827
Tssr35828 3 135691325 to 135691370 45 - TSS region transcription start site region 35828
Tssr35829 3 135691385 to 135691407 22 - TSS region transcription start site region 35829
Tssr35830 3 135691411 to 135691417 6 - TSS region transcription start site region 35830
Tssr35831 3 135691420 to 135691479 59 - TSS region transcription start site region 35831
Tssr35832 3 135691488 to 135691511 23 - TSS region transcription start site region 35832
Tssr35833 3 135691512 to 135691564 52 - TSS region transcription start site region 35833
Tssr35834 3 135691939 to 135691981 42 - TSS region transcription start site region 35834
Tssr35835 3 135696815 to 135696828 13 - TSS region transcription start site region 35835
Tssr35836 3 135696842 to 135696847 5 - TSS region transcription start site region 35836
Tssr35837 3 135696871 to 135696878 7 - TSS region transcription start site region 35837
Tssr35838 3 135719238 to 135719249 11 - TSS region transcription start site region 35838
Cpgi13859 3 135725940 to 135726237 297 CpG island CpG island 13859
Tssr31846 3 135816840 to 135816879 39 + TSS region transcription start site region 31846
Tssr31847 3 135824053 to 135824056 3 + TSS region transcription start site region 31847
Slc39a8 3 135825279 to 135888572 63293 + protein coding gene solute carrier family 39 (metal ion transporter), member 8
Tssr31848 3 135825605 to 135825620 15 + TSS region transcription start site region 31848
Tssr31849 3 135825648 to 135825664 16 + TSS region transcription start site region 31849
Tssr31850 3 135825788 to 135825800 12 + TSS region transcription start site region 31850
Cpgi13860 3 135825998 to 135826731 733 CpG island CpG island 13860
Tssr31851 3 135826075 to 135826086 11 + TSS region transcription start site region 31851
Tssr31852 3 135826095 to 135826118 23 + TSS region transcription start site region 31852
Tssr31853 3 135826128 to 135826173 45 + TSS region transcription start site region 31853
Tssr31854 3 135826228 to 135826243 15 + TSS region transcription start site region 31854
Tssr31855 3 135826251 to 135826270 19 + TSS region transcription start site region 31855
Tssr31856 3 135826275 to 135826329 54 + TSS region transcription start site region 31856
Tssr31857 3 135826385 to 135826420 35 + TSS region transcription start site region 31857
Tssr31858 3 135826423 to 135826449 26 + TSS region transcription start site region 31858
4933401H06Rik 3 135833701 to 135840269 6568 - lncRNA gene RIKEN cDNA 4933401H06 gene
Cpgi13861 3 135839653 to 135839866 213 CpG island CpG island 13861
Tssr35839 3 135839741 to 135839759 18 - TSS region transcription start site region 35839
Tssr31859 3 135839767 to 135839792 25 + TSS region transcription start site region 31859
Tssr35840 3 135840254 to 135840288 34 - TSS region transcription start site region 35840
Tssr31860 3 135840323 to 135840345 22 + TSS region transcription start site region 31860
Gm43429 3 135860348 to 135862598 2250 + unclassified gene predicted gene 43429
Gm43428 3 135872113 to 135875957 3844 + unclassified gene predicted gene 43428
Tssr31861 3 135887073 to 135887093 20 + TSS region transcription start site region 31861
Tssr31862 3 135887196 to 135887211 15 + TSS region transcription start site region 31862
Gm31243 3 135901810 to 135929917 28107 + antisense lncRNA gene predicted gene, 31243
Gm18330 3 135902298 to 135902843 545 - pseudogene predicted gene, 18330
Gm16500 3 135963212 to 135972795 9583 - pseudogene predicted gene 16500
Gm43602 3 135963459 to 135963758 299 - pseudogene predicted gene 43602
Gm5281 3 136049555 to 136051688 2133 - pseudogene predicted gene 5281
Bank1 3 136053363 to 136326066 272703 - protein coding gene B cell scaffold protein with ankyrin repeats 1
Tssr1059 3 136061407 to 136061409 2 + TSS region transcription start site region 1059
Tssr35841 3 136103521 to 136103526 5 - TSS region transcription start site region 35841
Tssr35842 3 136167164 to 136167168 4 - TSS region transcription start site region 35842
Tssr35843 3 136325928 to 136325947 19 - TSS region transcription start site region 35843
Tssr35844 3 136325953 to 136325961 8 - TSS region transcription start site region 35844
Tssr35845 3 136325962 to 136326034 72 - TSS region transcription start site region 35845
Tssr35846 3 136326038 to 136326060 22 - TSS region transcription start site region 35846
Gm9408 3 136331486 to 136332990 1504 + pseudogene predicted gene 9408
Gm43402 3 136346204 to 136346362 158 + pseudogene predicted gene 43402
Ses9 3 136351571 to 136351695 124 QTL salmonella enteritidis susceptibility 9
Afpq8 3 136351571 to 136351695 124 QTL abdominal fat percent QTL 8
D3Mit256 3 136351571 to 136351695 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 256
D3Mit291 3 136371919 to 136372024 105 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 291
Sum2 3 136371919 to 147891026 11519107 heritable phenotypic marker suppressor of methyl CpG binding protein 2, 2
1700030L20Rik 3 136435270 to 136449349 14079 - lincRNA gene RIKEN cDNA 1700030L20 gene
Tssr35847 3 136449442 to 136449451 9 - TSS region transcription start site region 35847
Tssr35848 3 136449481 to 136449485 4 - TSS region transcription start site region 35848
D3Mit255 3 136578385 to 136578517 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 255
Tgq15 3 136612825 to 136612825 0 QTL triglyceride QTL 15
Tgq14 3 136612825 to 136612825 0 QTL triglyceride QTL 14
Cpgi13862 3 136669311 to 136672389 3078 CpG island CpG island 13862
Tssr35849 3 136669892 to 136669937 45 - TSS region transcription start site region 35849
Tssr31863 3 136670076 to 136670186 110 + TSS region transcription start site region 31863
Ppp3ca 3 136670124 to 136937727 267603 + protein coding gene protein phosphatase 3, catalytic subunit, alpha isoform
Tssr31864 3 136670188 to 136670207 19 + TSS region transcription start site region 31864
Tssr31865 3 136670218 to 136670229 11 + TSS region transcription start site region 31865
Tssr31866 3 136670256 to 136670264 8 + TSS region transcription start site region 31866
Tssr31867 3 136670280 to 136670307 27 + TSS region transcription start site region 31867
Tssr31868 3 136670420 to 136670426 6 + TSS region transcription start site region 31868
Tssr31869 3 136670430 to 136670439 9 + TSS region transcription start site region 31869
Tssr31870 3 136670456 to 136670474 18 + TSS region transcription start site region 31870
Tssr31871 3 136670520 to 136670527 7 + TSS region transcription start site region 31871
Tssr31872 3 136670569 to 136670583 14 + TSS region transcription start site region 31872
Tssr31873 3 136670586 to 136670602 16 + TSS region transcription start site region 31873
Tssr31874 3 136670679 to 136670728 49 + TSS region transcription start site region 31874
Tssr31875 3 136670815 to 136670824 9 + TSS region transcription start site region 31875
Tssr31876 3 136670867 to 136670874 7 + TSS region transcription start site region 31876
Tssr31877 3 136673096 to 136673099 3 + TSS region transcription start site region 31877
Tssr35850 3 136684652 to 136684667 15 - TSS region transcription start site region 35850
Tssr31878 3 136684886 to 136684901 15 + TSS region transcription start site region 31878
Tssr31879 3 136692259 to 136692272 13 + TSS region transcription start site region 31879
Tssr31880 3 136692323 to 136692333 10 + TSS region transcription start site region 31880
Tssr31881 3 136696826 to 136696833 7 + TSS region transcription start site region 31881
Gm42822 3 136701211 to 136702739 1528 + unclassified gene predicted gene 42822
Tssr31882 3 136702763 to 136702767 4 + TSS region transcription start site region 31882
Tssr31883 3 136713701 to 136713714 13 + TSS region transcription start site region 31883
Tssr31884 3 136722295 to 136722301 6 + TSS region transcription start site region 31884
Tssr31885 3 136755053 to 136755058 5 + TSS region transcription start site region 31885
4930599N24Rik 3 136758958 to 136759960 1002 - unclassified gene RIKEN cDNA 4930599N24 gene
Tssr31886 3 136775718 to 136775721 3 + TSS region transcription start site region 31886
Gm44327 3 136798262 to 136798378 116 - miRNA gene predicted gene, 44327
Tssr31887 3 136805300 to 136805318 18 + TSS region transcription start site region 31887
D3Mit146 3 136841004 to 136841138 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 146
Cpgi13863 3 136902883 to 136903160 277 CpG island CpG island 13863
Tssr31888 3 136903018 to 136903024 6 + TSS region transcription start site region 31888
Tssr31889 3 136903027 to 136903069 42 + TSS region transcription start site region 31889
Tssr31890 3 136903075 to 136903089 14 + TSS region transcription start site region 31890
Tssr31891 3 136935250 to 136935261 11 + TSS region transcription start site region 31891
Tssr31892 3 136935517 to 136935544 27 + TSS region transcription start site region 31892
Tssr31893 3 136935571 to 136935591 20 + TSS region transcription start site region 31893
Tssr31894 3 136935694 to 136935741 47 + TSS region transcription start site region 31894
Tssr35851 3 136935774 to 136935782 8 - TSS region transcription start site region 35851
1700006H20Rik 3 136942557 to 136955087 12530 - lncRNA gene RIKEN cDNA 1700006H20 gene
Gm43357 3 136943237 to 136946544 3307 - lincRNA gene predicted gene 43357
Gm9409 3 136948605 to 136948920 315 + pseudogene predicted gene 9409
Gm43356 3 136952790 to 136955093 2303 - lincRNA gene predicted gene 43356
Tssr31895 3 136955274 to 136955284 10 + TSS region transcription start site region 31895
D3Mit125 3 136996728 to 136996870 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 125
D3Mit218 3 137035503 to 137035643 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 218
Gm26107 3 137067892 to 137067998 106 + snRNA gene predicted gene, 26107
D3Mit16 3 137073096 to 137073283 187 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 16
Lprm2 3 137073096 to 137073283 187 QTL lymphoproliferation modifier 2
Tssr31896 3 137287892 to 137287897 5 + TSS region transcription start site region 31896
Gm567 3 137289623 to 137299995 10372 + lincRNA gene predicted gene 567
Tssr35852 3 137336127 to 137336130 3 - TSS region transcription start site region 35852
Tssr31897 3 137341032 to 137341046 14 + TSS region transcription start site region 31897
Emcn 3 137341061 to 137431069 90008 + protein coding gene endomucin
Tssr31898 3 137341076 to 137341095 19 + TSS region transcription start site region 31898
Tssr31899 3 137341103 to 137341146 43 + TSS region transcription start site region 31899
Tssr31900 3 137341147 to 137341154 7 + TSS region transcription start site region 31900
Tssr31901 3 137341179 to 137341190 11 + TSS region transcription start site region 31901
Tssr31902 3 137341212 to 137341223 11 + TSS region transcription start site region 31902
Gm38650 3 137349361 to 137369628 20267 - lncRNA gene predicted gene, 38650
D3Mit349 3 137546613 to 137546724 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 349
Gm4861 3 137550045 to 137552622 2577 - lincRNA gene predicted gene 4861
Tssr35853 3 137552657 to 137552665 8 - TSS region transcription start site region 35853
Tssr35854 3 137564383 to 137564425 42 - TSS region transcription start site region 35854
Gm22468 3 137621474 to 137621593 119 + miRNA gene predicted gene, 22468
Cpgi13864 3 137623520 to 137624347 827 CpG island CpG island 13864
Ddit4l 3 137623672 to 137628332 4660 + protein coding gene DNA-damage-inducible transcript 4-like
Tssr31903 3 137623716 to 137623727 11 + TSS region transcription start site region 31903
Tssr31904 3 137623728 to 137623756 28 + TSS region transcription start site region 31904
Tssr31905 3 137623769 to 137623789 20 + TSS region transcription start site region 31905
Tssr31906 3 137624031 to 137624062 31 + TSS region transcription start site region 31906
Tssr31907 3 137624203 to 137624210 7 + TSS region transcription start site region 31907
Tssr31908 3 137626630 to 137626636 6 + TSS region transcription start site region 31908
Gm30946 3 137644058 to 137644781 723 - pseudogene predicted gene, 30946
D3Mit193 3 137657629 to 137657778 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 193
Gm21962 3 137671524 to 137672540 1016 + protein coding gene predicted gene, 21962
Gm42610 3 137690987 to 137699128 8141 + lincRNA gene predicted gene 42610
Gm25080 3 137715658 to 137715764 106 + snRNA gene predicted gene, 25080
D3Mit350 3 137747149 to 137747247 98 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 350
Ctrq2 3 137747247 to 89232660 -48514587 QTL C. trachomatis resistance QTL 2
Cpgi13865 3 137752972 to 137753129 157 CpG island CpG island 13865
Tssr31909 3 137780409 to 137780450 41 + TSS region transcription start site region 31909
Mir6380 3 137783535 to 137783615 80 - miRNA gene microRNA 6380
Gm31678 3 137795269 to 137802639 7370 - lincRNA gene predicted gene, 31678
Tssr31910 3 137833915 to 137833929 14 + TSS region transcription start site region 31910
Tssr31911 3 137838494 to 137838499 5 + TSS region transcription start site region 31911
Gm43403 3 137863704 to 137864399 695 - antisense lncRNA gene predicted gene 43403
Cpgi13866 3 137863968 to 137865828 1860 CpG island CpG island 13866
Tssr35855 3 137864317 to 137864331 14 - TSS region transcription start site region 35855
H2afz 3 137864487 to 137866922 2435 + protein coding gene H2A histone family, member Z
Tssr31912 3 137864503 to 137864525 22 + TSS region transcription start site region 31912
Tssr31913 3 137864535 to 137864564 29 + TSS region transcription start site region 31913
Tssr31914 3 137864573 to 137864591 18 + TSS region transcription start site region 31914
Tssr31915 3 137865059 to 137865121 62 + TSS region transcription start site region 31915
Tssr31916 3 137865868 to 137865871 3 + TSS region transcription start site region 31916
Tssr31917 3 137865900 to 137865938 38 + TSS region transcription start site region 31917
Cpgi13867 3 137867351 to 137868384 1033 CpG island CpG island 13867
Dnajb14 3 137867675 to 137916557 48882 + protein coding gene DnaJ heat shock protein family (Hsp40) member B14
Tssr31918 3 137867758 to 137867797 39 + TSS region transcription start site region 31918