Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:135564655-135711547

64 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Manba	3	135485611 to 135571404	85793	+	protein coding gene	mannosidase, beta A, lysosomal
Tssr31837	3	135571717 to 135571747	30	+	TSS region	transcription start site region 31837
Tssr31838	3	135584655 to 135584659	4	+	TSS region	transcription start site region 31838
Nfkb1	3	135584655 to 135691547	106892	-	protein coding gene	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
Tssr35789	3	135587988 to 135588011	23	-	TSS region	transcription start site region 35789
Tssr35790	3	135588314 to 135588322	8	-	TSS region	transcription start site region 35790
Tssr35791	3	135589972 to 135590014	42	-	TSS region	transcription start site region 35791
Tssr35792	3	135590577 to 135590605	28	-	TSS region	transcription start site region 35792
Tssr35793	3	135590621 to 135590632	11	-	TSS region	transcription start site region 35793
Tssr35794	3	135594361 to 135594400	39	-	TSS region	transcription start site region 35794
Tssr35795	3	135594406 to 135594425	19	-	TSS region	transcription start site region 35795
Tssr35796	3	135598999 to 135599018	19	-	TSS region	transcription start site region 35796
Tssr31839	3	135603028 to 135603068	40	+	TSS region	transcription start site region 31839
Tssr31840	3	135607385 to 135607395	10	+	TSS region	transcription start site region 31840
Cpgi13857	3	135608070 to 135608488	418		CpG island	CpG island 13857
Tssr35797	3	135608221 to 135608290	69	-	TSS region	transcription start site region 35797
Tssr35798	3	135608361 to 135608379	18	-	TSS region	transcription start site region 35798
Tssr35799	3	135608401 to 135608412	11	-	TSS region	transcription start site region 35799
Gm46827	3	135611586 to 135612839	1253	+	lncRNA gene	predicted gene, 46827
Tssr35800	3	135613677 to 135613681	4	-	TSS region	transcription start site region 35800
Tssr35801	3	135650316 to 135650358	42	-	TSS region	transcription start site region 35801
Gm43430	3	135650670 to 135654566	3896	-	unclassified gene	predicted gene 43430
Tssr35802	3	135650760 to 135650765	5	-	TSS region	transcription start site region 35802
Tssr35803	3	135657362 to 135657379	17	-	TSS region	transcription start site region 35803
Tssr35804	3	135663294 to 135663313	19	-	TSS region	transcription start site region 35804
Tssr35805	3	135665082 to 135665090	8	-	TSS region	transcription start site region 35805
Tssr35806	3	135665093 to 135665100	7	-	TSS region	transcription start site region 35806
Tssr35807	3	135665113 to 135665125	12	-	TSS region	transcription start site region 35807
Tssr35808	3	135665154 to 135665166	12	-	TSS region	transcription start site region 35808
Tssr35809	3	135665191 to 135665198	7	-	TSS region	transcription start site region 35809
Tssr35810	3	135665216 to 135665271	55	-	TSS region	transcription start site region 35810
Tssr35811	3	135665283 to 135665296	13	-	TSS region	transcription start site region 35811
Tssr35812	3	135665302 to 135665310	8	-	TSS region	transcription start site region 35812
Tssr35813	3	135665343 to 135665354	11	-	TSS region	transcription start site region 35813
Tssr35814	3	135665367 to 135665378	11	-	TSS region	transcription start site region 35814
Tssr35815	3	135665398 to 135665407	9	-	TSS region	transcription start site region 35815
Tssr35816	3	135665415 to 135665427	12	-	TSS region	transcription start site region 35816
Tssr35817	3	135665485 to 135665499	14	-	TSS region	transcription start site region 35817
Tssr35818	3	135665513 to 135665524	11	-	TSS region	transcription start site region 35818
Tssr35819	3	135665545 to 135665555	10	-	TSS region	transcription start site region 35819
Tssr35820	3	135667814 to 135667821	7	-	TSS region	transcription start site region 35820
Tssr35821	3	135674592 to 135674634	42	-	TSS region	transcription start site region 35821
Tssr35822	3	135687885 to 135687928	43	-	TSS region	transcription start site region 35822
Tssr31841	3	135689120 to 135689131	11	+	TSS region	transcription start site region 31841
Tssr31842	3	135689139 to 135689150	11	+	TSS region	transcription start site region 31842
Tssr31843	3	135689151 to 135689168	17	+	TSS region	transcription start site region 31843
Tssr31844	3	135689173 to 135689203	30	+	TSS region	transcription start site region 31844
Tssr31845	3	135689234 to 135689243	9	+	TSS region	transcription start site region 31845
Tssr35823	3	135689255 to 135689268	13	-	TSS region	transcription start site region 35823
Tssr35824	3	135689778 to 135689782	4	-	TSS region	transcription start site region 35824
Cpgi13858	3	135690654 to 135691980	1326		CpG island	CpG island 13858
Tssr35825	3	135691139 to 135691256	117	-	TSS region	transcription start site region 35825
Tssr35826	3	135691265 to 135691271	6	-	TSS region	transcription start site region 35826
Tssr35827	3	135691274 to 135691313	39	-	TSS region	transcription start site region 35827
Tssr35828	3	135691325 to 135691370	45	-	TSS region	transcription start site region 35828
Tssr35829	3	135691385 to 135691407	22	-	TSS region	transcription start site region 35829
Tssr35830	3	135691411 to 135691417	6	-	TSS region	transcription start site region 35830
Tssr35831	3	135691420 to 135691479	59	-	TSS region	transcription start site region 35831
Tssr35832	3	135691488 to 135691511	23	-	TSS region	transcription start site region 35832
Tssr35833	3	135691512 to 135691564	52	-	TSS region	transcription start site region 35833
Tssr35834	3	135691939 to 135691981	42	-	TSS region	transcription start site region 35834
Tssr35835	3	135696815 to 135696828	13	-	TSS region	transcription start site region 35835
Tssr35836	3	135696842 to 135696847	5	-	TSS region	transcription start site region 35836
Tssr35837	3	135696871 to 135696878	7	-	TSS region	transcription start site region 35837