Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:135438549-135658562

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930539J05Rik 3 135436220 to 135438665 2445 - antisense lncRNA gene RIKEN cDNA 4930539J05 gene
Cpgi13855 3 135437784 to 135439652 1868 CpG island CpG island 13855
Ube2d3 3 135438237 to 135467178 28941 + protein coding gene ubiquitin-conjugating enzyme E2D 3
Tssr31816 3 135438543 to 135438584 41 + TSS region transcription start site region 31816
Tssr35783 3 135438602 to 135438638 36 - TSS region transcription start site region 35783
Tssr35784 3 135438657 to 135438705 48 - TSS region transcription start site region 35784
Tssr31817 3 135438722 to 135438780 58 + TSS region transcription start site region 31817
Tssr31818 3 135439026 to 135439053 27 + TSS region transcription start site region 31818
Tssr31819 3 135439054 to 135439063 9 + TSS region transcription start site region 31819
Tssr31820 3 135439089 to 135439098 9 + TSS region transcription start site region 31820
Tssr31821 3 135439101 to 135439174 73 + TSS region transcription start site region 31821
Tssr31822 3 135439384 to 135439440 56 + TSS region transcription start site region 31822
Tssr31823 3 135439442 to 135439469 27 + TSS region transcription start site region 31823
Tssr31824 3 135439470 to 135439500 30 + TSS region transcription start site region 31824
Tssr1058 3 135440262 to 135440276 14 - TSS region transcription start site region 1058
Tssr35785 3 135440371 to 135440376 5 - TSS region transcription start site region 35785
Tssr31825 3 135455928 to 135455932 4 + TSS region transcription start site region 31825
Tssr31826 3 135462592 to 135462606 14 + TSS region transcription start site region 31826
Tssr31827 3 135462959 to 135463008 49 + TSS region transcription start site region 31827
Gm30992 3 135471697 to 135485516 13819 - lncRNA gene predicted gene, 30992
Gm42807 3 135483632 to 135483960 328 + pseudogene predicted gene 42807
Cpgi13856 3 135485227 to 135485943 716 CpG island CpG island 13856
Tssr31828 3 135485605 to 135485668 63 + TSS region transcription start site region 31828
Manba 3 135485611 to 135571404 85793 + protein coding gene mannosidase, beta A, lysosomal
Gm16100 3 135495653 to 135495883 230 + pseudogene predicted gene 16100
Tssr31829 3 135511864 to 135511873 9 + TSS region transcription start site region 31829
Tssr31830 3 135522912 to 135522938 26 + TSS region transcription start site region 31830
Oaz2-ps 3 135525964 to 135526532 568 - pseudogene ornithine decarboxylase antizyme 2, pseudogene
Tssr35786 3 135543242 to 135543257 15 - TSS region transcription start site region 35786
Tssr31831 3 135544691 to 135544705 14 + TSS region transcription start site region 31831
Tssr35787 3 135546527 to 135546538 11 - TSS region transcription start site region 35787
Tssr31832 3 135547585 to 135547598 13 + TSS region transcription start site region 31832
Tssr31833 3 135548549 to 135548562 13 + TSS region transcription start site region 31833
Tssr31834 3 135548578 to 135548592 14 + TSS region transcription start site region 31834
Tssr31835 3 135548603 to 135548626 23 + TSS region transcription start site region 31835
Tssr35788 3 135550459 to 135550470 11 - TSS region transcription start site region 35788
Tssr31836 3 135553160 to 135553168 8 + TSS region transcription start site region 31836
Tssr31837 3 135571717 to 135571747 30 + TSS region transcription start site region 31837
Tssr31838 3 135584655 to 135584659 4 + TSS region transcription start site region 31838
Nfkb1 3 135584655 to 135691547 106892 - protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
Tssr35789 3 135587988 to 135588011 23 - TSS region transcription start site region 35789
Tssr35790 3 135588314 to 135588322 8 - TSS region transcription start site region 35790
Tssr35791 3 135589972 to 135590014 42 - TSS region transcription start site region 35791
Tssr35792 3 135590577 to 135590605 28 - TSS region transcription start site region 35792
Tssr35793 3 135590621 to 135590632 11 - TSS region transcription start site region 35793
Tssr35794 3 135594361 to 135594400 39 - TSS region transcription start site region 35794
Tssr35795 3 135594406 to 135594425 19 - TSS region transcription start site region 35795
Tssr35796 3 135598999 to 135599018 19 - TSS region transcription start site region 35796
Tssr31839 3 135603028 to 135603068 40 + TSS region transcription start site region 31839
Tssr31840 3 135607385 to 135607395 10 + TSS region transcription start site region 31840
Cpgi13857 3 135608070 to 135608488 418 CpG island CpG island 13857
Tssr35797 3 135608221 to 135608290 69 - TSS region transcription start site region 35797
Tssr35798 3 135608361 to 135608379 18 - TSS region transcription start site region 35798
Tssr35799 3 135608401 to 135608412 11 - TSS region transcription start site region 35799
Gm46827 3 135611586 to 135612839 1253 + lncRNA gene predicted gene, 46827
Tssr35800 3 135613677 to 135613681 4 - TSS region transcription start site region 35800
Tssr35801 3 135650316 to 135650358 42 - TSS region transcription start site region 35801
Gm43430 3 135650670 to 135654566 3896 - unclassified gene predicted gene 43430
Tssr35802 3 135650760 to 135650765 5 - TSS region transcription start site region 35802
Tssr35803 3 135657362 to 135657379 17 - TSS region transcription start site region 35803