Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:135356274-136026313

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154 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ogrq1 3 110177041 to 136010051 25833010 QTL overall growth rate QTL 1
Pwbwq7 3 110177041 to 136010051 25833010 QTL post-weaning body weight QTL 7
Pwbwq6 3 110177041 to 136010051 25833010 QTL post-weaning body weight QTL 6
Slc9b1 3 135348029 to 135397827 49798 + protein coding gene solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
Cisd2 3 135406412 to 135423925 17513 - protein coding gene CDGSH iron sulfur domain 2
Tssr35775 3 135408048 to 135408121 73 - TSS region transcription start site region 35775
Tssr35776 3 135408718 to 135408738 20 - TSS region transcription start site region 35776
Cpgi13854 3 135422770 to 135423728 958 CpG island CpG island 13854
Tssr35777 3 135423381 to 135423453 72 - TSS region transcription start site region 35777
Tssr35778 3 135423475 to 135423486 11 - TSS region transcription start site region 35778
Tssr35779 3 135424047 to 135424084 37 - TSS region transcription start site region 35779
Tssr35780 3 135424096 to 135424098 2 - TSS region transcription start site region 35780
2810428J06Rik 3 135425237 to 135427932 2695 - unclassified gene RIKEN cDNA 2810428J06 gene
Gm43379 3 135428163 to 135435888 7725 - unclassified gene predicted gene 43379
Tssr35781 3 135428473 to 135428477 4 - TSS region transcription start site region 35781
4930539J05Rik 3 135436220 to 135438665 2445 - antisense lncRNA gene RIKEN cDNA 4930539J05 gene
Cpgi13855 3 135437784 to 135439652 1868 CpG island CpG island 13855
Tssr35782 3 135437984 to 135438006 22 - TSS region transcription start site region 35782
Tssr31809 3 135438114 to 135438126 12 + TSS region transcription start site region 31809
Tssr31810 3 135438144 to 135438153 9 + TSS region transcription start site region 31810
Ube2d3 3 135438237 to 135467178 28941 + protein coding gene ubiquitin-conjugating enzyme E2D 3
Tssr31811 3 135438280 to 135438303 23 + TSS region transcription start site region 31811
Tssr31812 3 135438379 to 135438390 11 + TSS region transcription start site region 31812
Tssr31813 3 135438432 to 135438452 20 + TSS region transcription start site region 31813
Tssr31814 3 135438474 to 135438485 11 + TSS region transcription start site region 31814
Tssr31815 3 135438526 to 135438540 14 + TSS region transcription start site region 31815
Tssr31816 3 135438543 to 135438584 41 + TSS region transcription start site region 31816
Tssr35783 3 135438602 to 135438638 36 - TSS region transcription start site region 35783
Tssr35784 3 135438657 to 135438705 48 - TSS region transcription start site region 35784
Tssr31817 3 135438722 to 135438780 58 + TSS region transcription start site region 31817
Tssr31818 3 135439026 to 135439053 27 + TSS region transcription start site region 31818
Tssr31819 3 135439054 to 135439063 9 + TSS region transcription start site region 31819
Tssr31820 3 135439089 to 135439098 9 + TSS region transcription start site region 31820
Tssr31821 3 135439101 to 135439174 73 + TSS region transcription start site region 31821
Tssr31822 3 135439384 to 135439440 56 + TSS region transcription start site region 31822
Tssr31823 3 135439442 to 135439469 27 + TSS region transcription start site region 31823
Tssr31824 3 135439470 to 135439500 30 + TSS region transcription start site region 31824
Tssr1058 3 135440262 to 135440276 14 - TSS region transcription start site region 1058
Tssr35785 3 135440371 to 135440376 5 - TSS region transcription start site region 35785
Tssr31825 3 135455928 to 135455932 4 + TSS region transcription start site region 31825
Tssr31826 3 135462592 to 135462606 14 + TSS region transcription start site region 31826
Tssr31827 3 135462959 to 135463008 49 + TSS region transcription start site region 31827
Gm30992 3 135471697 to 135485516 13819 - lncRNA gene predicted gene, 30992
Gm42807 3 135483632 to 135483960 328 + pseudogene predicted gene 42807
Cpgi13856 3 135485227 to 135485943 716 CpG island CpG island 13856
Tssr31828 3 135485605 to 135485668 63 + TSS region transcription start site region 31828
Manba 3 135485611 to 135571404 85793 + protein coding gene mannosidase, beta A, lysosomal
Gm16100 3 135495653 to 135495883 230 + pseudogene predicted gene 16100
Tssr31829 3 135511864 to 135511873 9 + TSS region transcription start site region 31829
Tssr31830 3 135522912 to 135522938 26 + TSS region transcription start site region 31830
Oaz2-ps 3 135525964 to 135526532 568 - pseudogene ornithine decarboxylase antizyme 2, pseudogene
Tssr35786 3 135543242 to 135543257 15 - TSS region transcription start site region 35786
Tssr31831 3 135544691 to 135544705 14 + TSS region transcription start site region 31831
Tssr35787 3 135546527 to 135546538 11 - TSS region transcription start site region 35787
Tssr31832 3 135547585 to 135547598 13 + TSS region transcription start site region 31832
Tssr31833 3 135548549 to 135548562 13 + TSS region transcription start site region 31833
Tssr31834 3 135548578 to 135548592 14 + TSS region transcription start site region 31834
Tssr31835 3 135548603 to 135548626 23 + TSS region transcription start site region 31835
Tssr35788 3 135550459 to 135550470 11 - TSS region transcription start site region 35788
Tssr31836 3 135553160 to 135553168 8 + TSS region transcription start site region 31836
Tssr31837 3 135571717 to 135571747 30 + TSS region transcription start site region 31837
Tssr31838 3 135584655 to 135584659 4 + TSS region transcription start site region 31838
Nfkb1 3 135584655 to 135691547 106892 - protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
Tssr35789 3 135587988 to 135588011 23 - TSS region transcription start site region 35789
Tssr35790 3 135588314 to 135588322 8 - TSS region transcription start site region 35790
Tssr35791 3 135589972 to 135590014 42 - TSS region transcription start site region 35791
Tssr35792 3 135590577 to 135590605 28 - TSS region transcription start site region 35792
Tssr35793 3 135590621 to 135590632 11 - TSS region transcription start site region 35793
Tssr35794 3 135594361 to 135594400 39 - TSS region transcription start site region 35794
Tssr35795 3 135594406 to 135594425 19 - TSS region transcription start site region 35795
Tssr35796 3 135598999 to 135599018 19 - TSS region transcription start site region 35796
Tssr31839 3 135603028 to 135603068 40 + TSS region transcription start site region 31839
Tssr31840 3 135607385 to 135607395 10 + TSS region transcription start site region 31840
Cpgi13857 3 135608070 to 135608488 418 CpG island CpG island 13857
Tssr35797 3 135608221 to 135608290 69 - TSS region transcription start site region 35797
Tssr35798 3 135608361 to 135608379 18 - TSS region transcription start site region 35798
Tssr35799 3 135608401 to 135608412 11 - TSS region transcription start site region 35799
Gm46827 3 135611586 to 135612839 1253 + lncRNA gene predicted gene, 46827
Tssr35800 3 135613677 to 135613681 4 - TSS region transcription start site region 35800
Tssr35801 3 135650316 to 135650358 42 - TSS region transcription start site region 35801
Gm43430 3 135650670 to 135654566 3896 - unclassified gene predicted gene 43430
Tssr35802 3 135650760 to 135650765 5 - TSS region transcription start site region 35802
Tssr35803 3 135657362 to 135657379 17 - TSS region transcription start site region 35803
Tssr35804 3 135663294 to 135663313 19 - TSS region transcription start site region 35804
Tssr35805 3 135665082 to 135665090 8 - TSS region transcription start site region 35805
Tssr35806 3 135665093 to 135665100 7 - TSS region transcription start site region 35806
Tssr35807 3 135665113 to 135665125 12 - TSS region transcription start site region 35807
Tssr35808 3 135665154 to 135665166 12 - TSS region transcription start site region 35808
Tssr35809 3 135665191 to 135665198 7 - TSS region transcription start site region 35809
Tssr35810 3 135665216 to 135665271 55 - TSS region transcription start site region 35810
Tssr35811 3 135665283 to 135665296 13 - TSS region transcription start site region 35811
Tssr35812 3 135665302 to 135665310 8 - TSS region transcription start site region 35812
Tssr35813 3 135665343 to 135665354 11 - TSS region transcription start site region 35813
Tssr35814 3 135665367 to 135665378 11 - TSS region transcription start site region 35814
Tssr35815 3 135665398 to 135665407 9 - TSS region transcription start site region 35815
Tssr35816 3 135665415 to 135665427 12 - TSS region transcription start site region 35816
Tssr35817 3 135665485 to 135665499 14 - TSS region transcription start site region 35817
Tssr35818 3 135665513 to 135665524 11 - TSS region transcription start site region 35818
Tssr35819 3 135665545 to 135665555 10 - TSS region transcription start site region 35819
Tssr35820 3 135667814 to 135667821 7 - TSS region transcription start site region 35820
Tssr35821 3 135674592 to 135674634 42 - TSS region transcription start site region 35821
Tssr35822 3 135687885 to 135687928 43 - TSS region transcription start site region 35822
Tssr31841 3 135689120 to 135689131 11 + TSS region transcription start site region 31841
Tssr31842 3 135689139 to 135689150 11 + TSS region transcription start site region 31842
Tssr31843 3 135689151 to 135689168 17 + TSS region transcription start site region 31843
Tssr31844 3 135689173 to 135689203 30 + TSS region transcription start site region 31844
Tssr31845 3 135689234 to 135689243 9 + TSS region transcription start site region 31845
Tssr35823 3 135689255 to 135689268 13 - TSS region transcription start site region 35823
Tssr35824 3 135689778 to 135689782 4 - TSS region transcription start site region 35824
Cpgi13858 3 135690654 to 135691980 1326 CpG island CpG island 13858
Tssr35825 3 135691139 to 135691256 117 - TSS region transcription start site region 35825
Tssr35826 3 135691265 to 135691271 6 - TSS region transcription start site region 35826
Tssr35827 3 135691274 to 135691313 39 - TSS region transcription start site region 35827
Tssr35828 3 135691325 to 135691370 45 - TSS region transcription start site region 35828
Tssr35829 3 135691385 to 135691407 22 - TSS region transcription start site region 35829
Tssr35830 3 135691411 to 135691417 6 - TSS region transcription start site region 35830
Tssr35831 3 135691420 to 135691479 59 - TSS region transcription start site region 35831
Tssr35832 3 135691488 to 135691511 23 - TSS region transcription start site region 35832
Tssr35833 3 135691512 to 135691564 52 - TSS region transcription start site region 35833
Tssr35834 3 135691939 to 135691981 42 - TSS region transcription start site region 35834
Tssr35835 3 135696815 to 135696828 13 - TSS region transcription start site region 35835
Tssr35836 3 135696842 to 135696847 5 - TSS region transcription start site region 35836
Tssr35837 3 135696871 to 135696878 7 - TSS region transcription start site region 35837
Tssr35838 3 135719238 to 135719249 11 - TSS region transcription start site region 35838
Cpgi13859 3 135725940 to 135726237 297 CpG island CpG island 13859
Tssr31846 3 135816840 to 135816879 39 + TSS region transcription start site region 31846
Tssr31847 3 135824053 to 135824056 3 + TSS region transcription start site region 31847
Slc39a8 3 135825279 to 135888572 63293 + protein coding gene solute carrier family 39 (metal ion transporter), member 8
Tssr31848 3 135825605 to 135825620 15 + TSS region transcription start site region 31848
Tssr31849 3 135825648 to 135825664 16 + TSS region transcription start site region 31849
Tssr31850 3 135825788 to 135825800 12 + TSS region transcription start site region 31850
Cpgi13860 3 135825998 to 135826731 733 CpG island CpG island 13860
Tssr31851 3 135826075 to 135826086 11 + TSS region transcription start site region 31851
Tssr31852 3 135826095 to 135826118 23 + TSS region transcription start site region 31852
Tssr31853 3 135826128 to 135826173 45 + TSS region transcription start site region 31853
Tssr31854 3 135826228 to 135826243 15 + TSS region transcription start site region 31854
Tssr31855 3 135826251 to 135826270 19 + TSS region transcription start site region 31855
Tssr31856 3 135826275 to 135826329 54 + TSS region transcription start site region 31856
Tssr31857 3 135826385 to 135826420 35 + TSS region transcription start site region 31857
Tssr31858 3 135826423 to 135826449 26 + TSS region transcription start site region 31858
4933401H06Rik 3 135833701 to 135840269 6568 - lncRNA gene RIKEN cDNA 4933401H06 gene
Cpgi13861 3 135839653 to 135839866 213 CpG island CpG island 13861
Tssr35839 3 135839741 to 135839759 18 - TSS region transcription start site region 35839
Tssr31859 3 135839767 to 135839792 25 + TSS region transcription start site region 31859
Tssr35840 3 135840254 to 135840288 34 - TSS region transcription start site region 35840
Tssr31860 3 135840323 to 135840345 22 + TSS region transcription start site region 31860
Gm43429 3 135860348 to 135862598 2250 + unclassified gene predicted gene 43429
Gm43428 3 135872113 to 135875957 3844 + unclassified gene predicted gene 43428
Tssr31861 3 135887073 to 135887093 20 + TSS region transcription start site region 31861
Tssr31862 3 135887196 to 135887211 15 + TSS region transcription start site region 31862
Gm31243 3 135901810 to 135929917 28107 + antisense lncRNA gene predicted gene, 31243
Gm18330 3 135902298 to 135902843 545 - pseudogene predicted gene, 18330
Gm16500 3 135963212 to 135972795 9583 - pseudogene predicted gene 16500
Gm43602 3 135963459 to 135963758 299 - pseudogene predicted gene 43602