Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:135261220-135613665

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cenpe 3 135212537 to 135273540 61003 + protein coding gene centromere protein E
Bdh2 3 135281221 to 135304426 23205 + protein coding gene 3-hydroxybutyrate dehydrogenase, type 2
Tssr31798 3 135281274 to 135281299 25 + TSS region transcription start site region 31798
Tssr31799 3 135281300 to 135281332 32 + TSS region transcription start site region 31799
Gm46826 3 135282046 to 135316253 34207 - lncRNA gene predicted gene, 46826
Tssr31800 3 135298781 to 135298834 53 + TSS region transcription start site region 31800
Tssr31801 3 135298847 to 135298861 14 + TSS region transcription start site region 31801
Tssr31802 3 135298872 to 135298917 45 + TSS region transcription start site region 31802
Tssr31803 3 135298933 to 135298940 7 + TSS region transcription start site region 31803
Tssr31804 3 135307681 to 135307706 25 + TSS region transcription start site region 31804
Slc9b2 3 135307692 to 135342845 35153 + protein coding gene solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2
Tssr31805 3 135307711 to 135307750 39 + TSS region transcription start site region 31805
Tssr31806 3 135348006 to 135348026 20 + TSS region transcription start site region 31806
Slc9b1 3 135348029 to 135397827 49798 + protein coding gene solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
Tssr31807 3 135348030 to 135348085 55 + TSS region transcription start site region 31807
Tssr31808 3 135348088 to 135348095 7 + TSS region transcription start site region 31808
Cisd2 3 135406412 to 135423925 17513 - protein coding gene CDGSH iron sulfur domain 2
Tssr35775 3 135408048 to 135408121 73 - TSS region transcription start site region 35775
Tssr35776 3 135408718 to 135408738 20 - TSS region transcription start site region 35776
Cpgi13854 3 135422770 to 135423728 958 CpG island CpG island 13854
Tssr35777 3 135423381 to 135423453 72 - TSS region transcription start site region 35777
Tssr35778 3 135423475 to 135423486 11 - TSS region transcription start site region 35778
Tssr35779 3 135424047 to 135424084 37 - TSS region transcription start site region 35779
Tssr35780 3 135424096 to 135424098 2 - TSS region transcription start site region 35780
2810428J06Rik 3 135425237 to 135427932 2695 - unclassified gene RIKEN cDNA 2810428J06 gene
Gm43379 3 135428163 to 135435888 7725 - unclassified gene predicted gene 43379
Tssr35781 3 135428473 to 135428477 4 - TSS region transcription start site region 35781
4930539J05Rik 3 135436220 to 135438665 2445 - antisense lncRNA gene RIKEN cDNA 4930539J05 gene
Cpgi13855 3 135437784 to 135439652 1868 CpG island CpG island 13855
Tssr35782 3 135437984 to 135438006 22 - TSS region transcription start site region 35782
Tssr31809 3 135438114 to 135438126 12 + TSS region transcription start site region 31809
Tssr31810 3 135438144 to 135438153 9 + TSS region transcription start site region 31810
Ube2d3 3 135438237 to 135467178 28941 + protein coding gene ubiquitin-conjugating enzyme E2D 3
Tssr31811 3 135438280 to 135438303 23 + TSS region transcription start site region 31811
Tssr31812 3 135438379 to 135438390 11 + TSS region transcription start site region 31812
Tssr31813 3 135438432 to 135438452 20 + TSS region transcription start site region 31813
Tssr31814 3 135438474 to 135438485 11 + TSS region transcription start site region 31814
Tssr31815 3 135438526 to 135438540 14 + TSS region transcription start site region 31815
Tssr31816 3 135438543 to 135438584 41 + TSS region transcription start site region 31816
Tssr35783 3 135438602 to 135438638 36 - TSS region transcription start site region 35783
Tssr35784 3 135438657 to 135438705 48 - TSS region transcription start site region 35784
Tssr31817 3 135438722 to 135438780 58 + TSS region transcription start site region 31817
Tssr31818 3 135439026 to 135439053 27 + TSS region transcription start site region 31818
Tssr31819 3 135439054 to 135439063 9 + TSS region transcription start site region 31819
Tssr31820 3 135439089 to 135439098 9 + TSS region transcription start site region 31820
Tssr31821 3 135439101 to 135439174 73 + TSS region transcription start site region 31821
Tssr31822 3 135439384 to 135439440 56 + TSS region transcription start site region 31822
Tssr31823 3 135439442 to 135439469 27 + TSS region transcription start site region 31823
Tssr31824 3 135439470 to 135439500 30 + TSS region transcription start site region 31824
Tssr1058 3 135440262 to 135440276 14 - TSS region transcription start site region 1058
Tssr35785 3 135440371 to 135440376 5 - TSS region transcription start site region 35785
Tssr31825 3 135455928 to 135455932 4 + TSS region transcription start site region 31825
Tssr31826 3 135462592 to 135462606 14 + TSS region transcription start site region 31826
Tssr31827 3 135462959 to 135463008 49 + TSS region transcription start site region 31827
Gm30992 3 135471697 to 135485516 13819 - lncRNA gene predicted gene, 30992
Gm42807 3 135483632 to 135483960 328 + pseudogene predicted gene 42807
Cpgi13856 3 135485227 to 135485943 716 CpG island CpG island 13856
Tssr31828 3 135485605 to 135485668 63 + TSS region transcription start site region 31828
Manba 3 135485611 to 135571404 85793 + protein coding gene mannosidase, beta A, lysosomal
Gm16100 3 135495653 to 135495883 230 + pseudogene predicted gene 16100
Tssr31829 3 135511864 to 135511873 9 + TSS region transcription start site region 31829
Tssr31830 3 135522912 to 135522938 26 + TSS region transcription start site region 31830
Oaz2-ps 3 135525964 to 135526532 568 - pseudogene ornithine decarboxylase antizyme 2, pseudogene
Tssr35786 3 135543242 to 135543257 15 - TSS region transcription start site region 35786
Tssr31831 3 135544691 to 135544705 14 + TSS region transcription start site region 31831
Tssr35787 3 135546527 to 135546538 11 - TSS region transcription start site region 35787
Tssr31832 3 135547585 to 135547598 13 + TSS region transcription start site region 31832
Tssr31833 3 135548549 to 135548562 13 + TSS region transcription start site region 31833
Tssr31834 3 135548578 to 135548592 14 + TSS region transcription start site region 31834
Tssr31835 3 135548603 to 135548626 23 + TSS region transcription start site region 31835
Tssr35788 3 135550459 to 135550470 11 - TSS region transcription start site region 35788
Tssr31836 3 135553160 to 135553168 8 + TSS region transcription start site region 31836
Tssr31837 3 135571717 to 135571747 30 + TSS region transcription start site region 31837
Tssr31838 3 135584655 to 135584659 4 + TSS region transcription start site region 31838
Nfkb1 3 135584655 to 135691547 106892 - protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
Tssr35789 3 135587988 to 135588011 23 - TSS region transcription start site region 35789
Tssr35790 3 135588314 to 135588322 8 - TSS region transcription start site region 35790
Tssr35791 3 135589972 to 135590014 42 - TSS region transcription start site region 35791
Tssr35792 3 135590577 to 135590605 28 - TSS region transcription start site region 35792
Tssr35793 3 135590621 to 135590632 11 - TSS region transcription start site region 35793
Tssr35794 3 135594361 to 135594400 39 - TSS region transcription start site region 35794
Tssr35795 3 135594406 to 135594425 19 - TSS region transcription start site region 35795
Tssr35796 3 135598999 to 135599018 19 - TSS region transcription start site region 35796
Tssr31839 3 135603028 to 135603068 40 + TSS region transcription start site region 31839
Tssr31840 3 135607385 to 135607395 10 + TSS region transcription start site region 31840
Cpgi13857 3 135608070 to 135608488 418 CpG island CpG island 13857
Tssr35797 3 135608221 to 135608290 69 - TSS region transcription start site region 35797
Tssr35798 3 135608361 to 135608379 18 - TSS region transcription start site region 35798
Tssr35799 3 135608401 to 135608412 11 - TSS region transcription start site region 35799
Gm46827 3 135611586 to 135612839 1253 + lncRNA gene predicted gene, 46827