Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:134243903-135414753

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cxxc4 3 134236415 to 134262090 25675 + protein coding gene CXXC finger 4
Tssr35774 3 134249451 to 134249452 1 - TSS region transcription start site region 35774
Tssr31792 3 134259339 to 134259355 16 + TSS region transcription start site region 31792
Gm43559 3 134272045 to 134272510 465 - pseudogene predicted gene 43559
Gm43558 3 134357292 to 134357501 209 + unclassified gene predicted gene 43558
Gm6077 3 134365606 to 134366104 498 - pseudogene predicted gene 6077
4930539C22Rik 3 134404143 to 134423635 19492 - lincRNA gene RIKEN cDNA 4930539C22 gene
Gm26820 3 134462087 to 134630765 168678 - lincRNA gene predicted gene, 26820
Cpgi13852 3 134828903 to 134829753 850 CpG island CpG island 13852
Tssr31793 3 134828993 to 134829015 22 + TSS region transcription start site region 31793
Tacr3 3 134829007 to 134934579 105572 + protein coding gene tachykinin receptor 3
Gm4860 3 134963121 to 134963574 453 + pseudogene predicted gene 4860
Gm43036 3 134965858 to 134967159 1301 + pseudogene predicted gene 43036
Gm43035 3 134971457 to 134971973 516 + pseudogene predicted gene 43035
Gm2142 3 135121861 to 135122446 585 + pseudogene predicted gene 2142
Gm24048 3 135147408 to 135147513 105 + miRNA gene predicted gene, 24048
Gm18546 3 135170629 to 135171304 675 + pseudogene predicted gene, 18546
Gm43033 3 135208987 to 135209411 424 + pseudogene predicted gene 43033
Cpgi13853 3 135212417 to 135213020 603 CpG island CpG island 13853
Cenpe 3 135212537 to 135273540 61003 + protein coding gene centromere protein E
Tssr31794 3 135212557 to 135212585 28 + TSS region transcription start site region 31794
Tssr31795 3 135212596 to 135212652 56 + TSS region transcription start site region 31795
Tssr31796 3 135238045 to 135238058 13 + TSS region transcription start site region 31796
Tssr31797 3 135242243 to 135242253 10 + TSS region transcription start site region 31797
Bdh2 3 135281221 to 135304426 23205 + protein coding gene 3-hydroxybutyrate dehydrogenase, type 2
Tssr31798 3 135281274 to 135281299 25 + TSS region transcription start site region 31798
Tssr31799 3 135281300 to 135281332 32 + TSS region transcription start site region 31799
Gm46826 3 135282046 to 135316253 34207 - lncRNA gene predicted gene, 46826
Tssr31800 3 135298781 to 135298834 53 + TSS region transcription start site region 31800
Tssr31801 3 135298847 to 135298861 14 + TSS region transcription start site region 31801
Tssr31802 3 135298872 to 135298917 45 + TSS region transcription start site region 31802
Tssr31803 3 135298933 to 135298940 7 + TSS region transcription start site region 31803
Tssr31804 3 135307681 to 135307706 25 + TSS region transcription start site region 31804
Slc9b2 3 135307692 to 135342845 35153 + protein coding gene solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2
Tssr31805 3 135307711 to 135307750 39 + TSS region transcription start site region 31805
Tssr31806 3 135348006 to 135348026 20 + TSS region transcription start site region 31806
Slc9b1 3 135348029 to 135397827 49798 + protein coding gene solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
Tssr31807 3 135348030 to 135348085 55 + TSS region transcription start site region 31807
Tssr31808 3 135348088 to 135348095 7 + TSS region transcription start site region 31808
Cisd2 3 135406412 to 135423925 17513 - protein coding gene CDGSH iron sulfur domain 2
Tssr35775 3 135408048 to 135408121 73 - TSS region transcription start site region 35775
Tssr35776 3 135408718 to 135408738 20 - TSS region transcription start site region 35776