Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:13333235-16393254

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208 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37197 3 13429558 to 13429958 400 + pseudogene predicted gene, 37197
Gm2464 3 13470439 to 13471829 1390 - lincRNA gene predicted gene 2464
Cpgi12985 3 13471360 to 13472187 827 CpG island CpG island 12985
Tssr28377 3 13471608 to 13471635 27 + TSS region transcription start site region 28377
Tssr28378 3 13471637 to 13471733 96 + TSS region transcription start site region 28378
Ralyl 3 13471655 to 14182287 710632 + protein coding gene RALY RNA binding protein-like
Tssr28379 3 13471747 to 13471758 11 + TSS region transcription start site region 28379
Tssr28380 3 13472023 to 13472030 7 + TSS region transcription start site region 28380
Tssr28381 3 13472450 to 13472469 19 + TSS region transcription start site region 28381
Tssr821 3 13472633 to 13472670 37 + TSS region transcription start site region 821
Cpgi12986 3 13472730 to 13473423 693 CpG island CpG island 12986
Tssr28382 3 13472871 to 13472927 56 + TSS region transcription start site region 28382
Tssr28383 3 13473205 to 13473218 13 + TSS region transcription start site region 28383
Tssr28384 3 13510011 to 13510016 5 + TSS region transcription start site region 28384
Tssr28385 3 13525946 to 13525947 1 + TSS region transcription start site region 28385
4930539N22Rik 3 13597139 to 13652865 55726 - lncRNA gene RIKEN cDNA 4930539N22 gene
Tssr28386 3 13610508 to 13610511 3 + TSS region transcription start site region 28386
Gm37164 3 13669509 to 13670145 636 - pseudogene predicted gene, 37164
Tssr28387 3 13748927 to 13748930 3 + TSS region transcription start site region 28387
Gm2474 3 13749938 to 13750483 545 + pseudogene predicted gene 2474
Tssr28388 3 13781746 to 13781750 4 + TSS region transcription start site region 28388
Tssr28389 3 13833436 to 13833445 9 + TSS region transcription start site region 28389
Gm19114 3 13838875 to 13840231 1356 - pseudogene predicted gene, 19114
Gm25981 3 13845686 to 13845980 294 + unclassified non-coding RNA gene predicted gene, 25981
C230073O14Rik 3 13847734 to 13850863 3129 unclassified gene RIKEN cDNA C230073O14 gene
Tssr28390 3 13884944 to 13884948 4 + TSS region transcription start site region 28390
Gm41998 3 13914161 to 13934435 20274 - lncRNA gene predicted gene, 41998
Tssr32631 3 13933883 to 13933906 23 - TSS region transcription start site region 32631
Tssr28391 3 13946368 to 13946379 11 + TSS region transcription start site region 28391
Tssr28392 3 13946385 to 13946416 31 + TSS region transcription start site region 28392
Gm22026 3 14029482 to 14029762 280 - unclassified non-coding RNA gene predicted gene, 22026
Gm18661 3 14098042 to 14099016 974 + pseudogene predicted gene, 18661
Gm19067 3 14150147 to 14150785 638 + pseudogene predicted gene, 19067
Gm18659 3 14163685 to 14164632 947 - pseudogene predicted gene, 18659
Gm23112 3 14267315 to 14267439 124 - snoRNA gene predicted gene, 23112
Gm38311 3 14330227 to 14330391 164 + pseudogene predicted gene, 38311
Gm6300 3 14363117 to 14374239 11122 + pseudogene predicted gene 6300
Gm37358 3 14383922 to 14384400 478 - pseudogene predicted gene, 37358
Tssr32632 3 14384430 to 14384448 18 - TSS region transcription start site region 32632
Gm8955 3 14428492 to 14435009 6517 - pseudogene predicted gene 8955
Slc7a12 3 14480691 to 14505819 25128 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
Tssr28393 3 14480692 to 14480707 15 + TSS region transcription start site region 28393
Tssr28394 3 14481263 to 14481306 43 + TSS region transcription start site region 28394
Tssr28395 3 14481382 to 14481392 10 + TSS region transcription start site region 28395
Tssr822 3 14504457 to 14504461 4 + TSS region transcription start site region 822
Tssr28396 3 14506094 to 14506102 8 + TSS region transcription start site region 28396
Tssr28397 3 14506183 to 14506192 9 + TSS region transcription start site region 28397
Tssr28398 3 14506290 to 14506301 11 + TSS region transcription start site region 28398
Tssr28399 3 14506446 to 14506457 11 + TSS region transcription start site region 28399
Tssr28400 3 14506637 to 14506655 18 + TSS region transcription start site region 28400
Tssr28401 3 14506658 to 14506661 3 + TSS region transcription start site region 28401
Tssr28402 3 14507927 to 14507936 9 + TSS region transcription start site region 28402
Gm8957 3 14511084 to 14512095 1011 - pseudogene predicted gene 8957
Tssr28403 3 14530627 to 14530656 29 + TSS region transcription start site region 28403
Cpgi12987 3 14533694 to 14534351 657 CpG island CpG island 12987
Tssr32633 3 14533778 to 14533818 40 - TSS region transcription start site region 32633
Lrrcc1 3 14533788 to 14572658 38870 + protein coding gene leucine rich repeat and coiled-coil domain containing 1
Tssr28404 3 14533804 to 14533815 11 + TSS region transcription start site region 28404
Tssr28405 3 14533817 to 14533866 49 + TSS region transcription start site region 28405
Tssr28406 3 14533867 to 14533889 22 + TSS region transcription start site region 28406
Tssr28407 3 14533907 to 14533920 13 + TSS region transcription start site region 28407
Gm17119 3 14564402 to 14564681 279 + pseudogene predicted gene 17119
Cpgi12988 3 14578339 to 14579281 942 CpG island CpG island 12988
Tssr28408 3 14578609 to 14578687 78 + TSS region transcription start site region 28408
E2f5 3 14578641 to 14606309 27668 + protein coding gene E2F transcription factor 5
Tssr28409 3 14578741 to 14578759 18 + TSS region transcription start site region 28409
Tssr28410 3 14578786 to 14578807 21 + TSS region transcription start site region 28410
Tssr28411 3 14578891 to 14578925 34 + TSS region transcription start site region 28411
Tssr28412 3 14603734 to 14603764 30 + TSS region transcription start site region 28412
Rbis 3 14606289 to 14611256 4967 - protein coding gene ribosomal biogenesis factor
Cpgi12989 3 14611020 to 14611799 779 CpG island CpG island 12989
Tssr32634 3 14611201 to 14611212 11 - TSS region transcription start site region 32634
Tssr32635 3 14611250 to 14611275 25 - TSS region transcription start site region 32635
Gm38151 3 14628952 to 14629240 288 - pseudogene predicted gene, 38151
Cpgi12990 3 14641458 to 14641977 519 CpG island CpG island 12990
Tssr28413 3 14641722 to 14641754 32 + TSS region transcription start site region 28413
Car13 3 14641727 to 14663002 21275 + protein coding gene carbonic anhydrase 13
Tssr28414 3 14641760 to 14641797 37 + TSS region transcription start site region 28414
Tssr28415 3 14644912 to 14644941 29 + TSS region transcription start site region 28415
Tssr28416 3 14649833 to 14649839 6 + TSS region transcription start site region 28416
Tssr28417 3 14661869 to 14661888 19 + TSS region transcription start site region 28417
Cpgi12991 3 14680428 to 14680602 174 CpG island CpG island 12991
Tssr28418 3 14704603 to 14704612 9 + TSS region transcription start site region 28418
Gm5843 3 14722415 to 14729018 6603 + pseudogene predicted gene 5843
Car1 3 14766214 to 14808365 42151 - protein coding gene carbonic anhydrase 1
Tssr28419 3 14766412 to 14766419 7 + TSS region transcription start site region 28419
Tssr28420 3 14766458 to 14766467 9 + TSS region transcription start site region 28420
Tssr32636 3 14766490 to 14766491 1 - TSS region transcription start site region 32636
Tssr32637 3 14766492 to 14766507 15 - TSS region transcription start site region 32637
Tssr28421 3 14766534 to 14766542 8 + TSS region transcription start site region 28421
Tssr28422 3 14766543 to 14766593 50 + TSS region transcription start site region 28422
Tssr32638 3 14766570 to 14766597 27 - TSS region transcription start site region 32638
Tssr32639 3 14766610 to 14766616 6 - TSS region transcription start site region 32639
Tssr28423 3 14767412 to 14767418 6 + TSS region transcription start site region 28423
Tssr823 3 14767480 to 14767485 5 - TSS region transcription start site region 823
Tssr28424 3 14767480 to 14767489 9 + TSS region transcription start site region 28424
Tssr32640 3 14767495 to 14767497 2 - TSS region transcription start site region 32640
Tssr32641 3 14767512 to 14767522 10 - TSS region transcription start site region 32641
Tssr28425 3 14767530 to 14767536 6 + TSS region transcription start site region 28425
Tssr32642 3 14767551 to 14767562 11 - TSS region transcription start site region 32642
Tssr32643 3 14769212 to 14769219 7 - TSS region transcription start site region 32643
Tssr28426 3 14770163 to 14770190 27 + TSS region transcription start site region 28426
Tssr32644 3 14770206 to 14770247 41 - TSS region transcription start site region 32644
D3Mit237 3 14770402 to 14770501 99 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 237
Tssr28427 3 14776219 to 14776238 19 + TSS region transcription start site region 28427
Tssr32645 3 14776254 to 14776276 22 - TSS region transcription start site region 32645
Tssr32646 3 14778452 to 14778466 14 - TSS region transcription start site region 32646
Gm16399 3 14802356 to 14802574 218 - pseudogene predicted pseudogene 16399
Tssr32647 3 14802603 to 14802637 34 - TSS region transcription start site region 32647
Tssr32648 3 14808358 to 14808373 15 - TSS region transcription start site region 32648
Tssr824 3 14808385 to 14808399 14 - TSS region transcription start site region 824
Tssr825 3 14808409 to 14808421 12 - TSS region transcription start site region 825
Gm41999 3 14825509 to 14864243 38734 - lncRNA gene predicted gene, 41999
Tssr28428 3 14862805 to 14862833 28 + TSS region transcription start site region 28428
Tssr28429 3 14862840 to 14862855 15 + TSS region transcription start site region 28429
Tssr32649 3 14863235 to 14863254 19 - TSS region transcription start site region 32649
Tssr28430 3 14863428 to 14863446 18 + TSS region transcription start site region 28430
Tssr28431 3 14863451 to 14863467 16 + TSS region transcription start site region 28431
Tssr28432 3 14863476 to 14863483 7 + TSS region transcription start site region 28432
Tssr28433 3 14863486 to 14863494 8 + TSS region transcription start site region 28433
Tssr28434 3 14863495 to 14863521 26 + TSS region transcription start site region 28434
Car3 3 14863538 to 14872381 8843 + protein coding gene carbonic anhydrase 3
Tssr32650 3 14863921 to 14863937 16 - TSS region transcription start site region 32650
Tssr32651 3 14864042 to 14864054 12 - TSS region transcription start site region 32651
Tssr32652 3 14864057 to 14864071 14 - TSS region transcription start site region 32652
Tssr28435 3 14864162 to 14864173 11 + TSS region transcription start site region 28435
Tssr28436 3 14864241 to 14864258 17 + TSS region transcription start site region 28436
Tssr28437 3 14864287 to 14864341 54 + TSS region transcription start site region 28437
Tssr28438 3 14865453 to 14865494 41 + TSS region transcription start site region 28438
Tssr28439 3 14866801 to 14866844 43 + TSS region transcription start site region 28439
Tssr28440 3 14866853 to 14866871 18 + TSS region transcription start site region 28440
Tssr28441 3 14868385 to 14868402 17 + TSS region transcription start site region 28441
Tssr28442 3 14869216 to 14869224 8 + TSS region transcription start site region 28442
Tssr28443 3 14869239 to 14869260 21 + TSS region transcription start site region 28443
Tssr28444 3 14870028 to 14870037 9 + TSS region transcription start site region 28444
Tssr28445 3 14870039 to 14870084 45 + TSS region transcription start site region 28445
Tssr28446 3 14870094 to 14870137 43 + TSS region transcription start site region 28446
Tssr28447 3 14870141 to 14870163 22 + TSS region transcription start site region 28447
Tssr28448 3 14871545 to 14871546 1 + TSS region transcription start site region 28448
Tssr28449 3 14871599 to 14871610 11 + TSS region transcription start site region 28449
Tssr28450 3 14871636 to 14871653 17 + TSS region transcription start site region 28450
Tssr28451 3 14871661 to 14871670 9 + TSS region transcription start site region 28451
Tssr28452 3 14871682 to 14871692 10 + TSS region transcription start site region 28452
Tssr28453 3 14871700 to 14871705 5 + TSS region transcription start site region 28453
Tssr28454 3 14871709 to 14871717 8 + TSS region transcription start site region 28454
Tssr28455 3 14871724 to 14871735 11 + TSS region transcription start site region 28455
Tssr32653 3 14871745 to 14871804 59 - TSS region transcription start site region 32653
Tssr28456 3 14871767 to 14871772 5 + TSS region transcription start site region 28456
Tssr28457 3 14871833 to 14871834 1 + TSS region transcription start site region 28457
Tssr28458 3 14872020 to 14872031 11 + TSS region transcription start site region 28458
Tssr28459 3 14872045 to 14872068 23 + TSS region transcription start site region 28459
Tssr28460 3 14872151 to 14872154 3 + TSS region transcription start site region 28460
Tssr28461 3 14872201 to 14872210 9 + TSS region transcription start site region 28461
Tssr28462 3 14872240 to 14872247 7 + TSS region transcription start site region 28462
Tssr28463 3 14872293 to 14872298 5 + TSS region transcription start site region 28463
Tssr28464 3 14872320 to 14872339 19 + TSS region transcription start site region 28464
Tssr28465 3 14872461 to 14872478 17 + TSS region transcription start site region 28465
Tssr32654 3 14872519 to 14872537 18 - TSS region transcription start site region 32654
Cpgi12992 3 14886015 to 14887214 1199 CpG island CpG island 12992
Tssr826 3 14886204 to 14886320 116 + TSS region transcription start site region 826
Car2 3 14886278 to 14900770 14492 + protein coding gene carbonic anhydrase 2
Tssr827 3 14886418 to 14886427 9 + TSS region transcription start site region 827
Tssr828 3 14886434 to 14886483 49 + TSS region transcription start site region 828
Tssr829 3 14886524 to 14886569 45 + TSS region transcription start site region 829
Tssr830 3 14886605 to 14886615 10 + TSS region transcription start site region 830
Tssr831 3 14886626 to 14886648 22 + TSS region transcription start site region 831
Tssr28466 3 14886683 to 14886700 17 + TSS region transcription start site region 28466
Tssr832 3 14886715 to 14886721 6 + TSS region transcription start site region 832
Tssr28467 3 14886815 to 14886859 44 + TSS region transcription start site region 28467
Tssr28468 3 14887388 to 14887416 28 + TSS region transcription start site region 28468
Tssr28469 3 14970278 to 14970285 7 + TSS region transcription start site region 28469
A930001A20Rik 3 14971201 to 15002727 31526 + lincRNA gene RIKEN cDNA A930001A20 gene
Gm7132 3 14973569 to 14974552 983 - pseudogene predicted gene 7132
Tssr32655 3 14993966 to 14993970 4 - TSS region transcription start site region 32655
Tssr28470 3 15000910 to 15000951 41 + TSS region transcription start site region 28470
Gm42000 3 15055968 to 15061831 5863 + lncRNA gene predicted gene, 42000
Tssr28471 3 15056069 to 15056103 34 + TSS region transcription start site region 28471
Gm33819 3 15153012 to 15157285 4273 - lincRNA gene predicted gene, 33819
Gm9733 3 15296551 to 15332302 35751 - protein coding gene predicted gene 9733
Tssr32656 3 15332265 to 15332282 17 - TSS region transcription start site region 32656
Tssr32657 3 15332285 to 15332298 13 - TSS region transcription start site region 32657
Sirpb1a 3 15371661 to 15426522 54861 - protein coding gene signal-regulatory protein beta 1A
Sirpb1b 3 15495754 to 15575067 79313 - protein coding gene signal-regulatory protein beta 1B
Gm21014 3 15514358 to 15515637 1279 + pseudogene predicted gene, 21014
Gm37468 3 15547479 to 15548599 1120 + antisense lncRNA gene predicted gene, 37468
Sirpb1c 3 15795147 to 15848530 53383 - protein coding gene signal-regulatory protein beta 1C
Gm6321 3 15891466 to 15892555 1089 - pseudogene predicted gene 6321
Gm7343 3 15941772 to 15942830 1058 - pseudogene predicted gene 7343
Gm5150 3 15946871 to 16006371 59500 - protein coding gene predicted gene 5150
Tssr32658 3 16006328 to 16006335 7 - TSS region transcription start site region 32658
Tssr32659 3 16006344 to 16006361 17 - TSS region transcription start site region 32659
Tssr32660 3 16006381 to 16006400 19 - TSS region transcription start site region 32660
Gm24694 3 16013818 to 16013927 109 + miRNA gene predicted gene, 24694
Gm37836 3 16078150 to 16078324 174 - pseudogene predicted gene, 37836
Tssr28472 3 16099867 to 16099875 8 + TSS region transcription start site region 28472
Gm25863 3 16115615 to 16115943 328 - ribozyme gene predicted gene, 25863
Cpgi12993 3 16182881 to 16183923 1042 CpG island CpG island 12993
Tssr28473 3 16183177 to 16183206 29 + TSS region transcription start site region 28473
Tssr28474 3 16183208 to 16183280 72 + TSS region transcription start site region 28474
Ythdf3 3 16183212 to 16217037 33825 + protein coding gene YTH N6-methyladenosine RNA binding protein 3