Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:133173684-134084758

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgef38 3 133159529 to 133234889 75360 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 38
Tssr35750 3 133234836 to 133234839 3 - TSS region transcription start site region 35750
Tssr35751 3 133234886 to 133234897 11 - TSS region transcription start site region 35751
Tssr35752 3 133234917 to 133234932 15 - TSS region transcription start site region 35752
Tssr35753 3 133234939 to 133234961 22 - TSS region transcription start site region 35753
Gm43254 3 133307518 to 133310008 2490 - lincRNA gene predicted gene 43254
Cpgi13848 3 133309671 to 133310954 1283 CpG island CpG island 13848
Tssr31773 3 133310088 to 133310091 3 + TSS region transcription start site region 31773
Tssr31774 3 133310093 to 133310145 52 + TSS region transcription start site region 31774
Ppa2 3 133310110 to 133378235 68125 + protein coding gene pyrophosphatase (inorganic) 2
Tssr31775 3 133310164 to 133310169 5 + TSS region transcription start site region 31775
Tssr31776 3 133310181 to 133310218 37 + TSS region transcription start site region 31776
Tssr35754 3 133310584 to 133310661 77 - TSS region transcription start site region 35754
Tssr31777 3 133320924 to 133320968 44 + TSS region transcription start site region 31777
Tssr35755 3 133334096 to 133334097 1 - TSS region transcription start site region 35755
Tssr31778 3 133338944 to 133338971 27 + TSS region transcription start site region 31778
Gm25042 3 133431703 to 133431823 120 - miRNA gene predicted gene, 25042
Tet2 3 133463679 to 133545139 81460 - protein coding gene tet methylcytosine dioxygenase 2
Tssr35756 3 133463907 to 133463910 3 - TSS region transcription start site region 35756
Tssr35757 3 133464264 to 133464268 4 - TSS region transcription start site region 35757
Tssr35758 3 133464943 to 133464947 4 - TSS region transcription start site region 35758
Tssr35759 3 133464982 to 133465026 44 - TSS region transcription start site region 35759
Tssr35760 3 133467743 to 133467756 13 - TSS region transcription start site region 35760
Tssr35761 3 133467767 to 133467780 13 - TSS region transcription start site region 35761
Tssr35762 3 133506657 to 133506686 29 - TSS region transcription start site region 35762
Tssr35763 3 133518772 to 133518785 13 - TSS region transcription start site region 35763
Tssr31779 3 133534369 to 133534381 12 + TSS region transcription start site region 31779
Tssr31780 3 133534402 to 133534413 11 + TSS region transcription start site region 31780
Tssr31781 3 133534416 to 133534426 10 + TSS region transcription start site region 31781
Cpgi13849 3 133543994 to 133545125 1131 CpG island CpG island 13849
Tssr35764 3 133544250 to 133544264 14 - TSS region transcription start site region 35764
Tssr35765 3 133544268 to 133544313 45 - TSS region transcription start site region 35765
Tssr35766 3 133544405 to 133544412 7 - TSS region transcription start site region 35766
Tssr35767 3 133544650 to 133544666 16 - TSS region transcription start site region 35767
Gm42567 3 133545097 to 133585053 39956 + antisense lncRNA gene predicted gene 42567
Tssr35768 3 133545129 to 133545155 26 - TSS region transcription start site region 35768
Tssr35769 3 133545317 to 133545325 8 - TSS region transcription start site region 35769
Gm49316 3 133579627 to 133579901 274 - pseudogene predicted gene 49316
Gm23011 3 133588406 to 133588537 131 - snoRNA gene predicted gene, 23011
Gm37228 3 133623684 to 133634758 11074 - unclassified gene predicted gene, 37228
Gm40153 3 133645808 to 133663391 17583 - lincRNA gene predicted gene, 40153
Tssr31782 3 133646647 to 133646656 9 + TSS region transcription start site region 31782
Tssr35770 3 133663381 to 133663409 28 - TSS region transcription start site region 35770
Tssr31783 3 133666337 to 133666346 9 + TSS region transcription start site region 31783
Tssr35771 3 133749530 to 133749541 11 - TSS region transcription start site region 35771
Gm6135 3 133789515 to 133791504 1989 - lincRNA gene prediticted gene 6135
Tssr35772 3 133791493 to 133791502 9 - TSS region transcription start site region 35772
Tssr35773 3 133791515 to 133791523 8 - TSS region transcription start site region 35773
Gm30484 3 133815919 to 133818518 2599 - lincRNA gene predicted gene, 30484
Gm26691 3 133830621 to 134149286 318665 - antisense lncRNA gene predicted gene, 26691