Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:132920911-135441351

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Npnt 3 132881745 to 132950291 68546 - protein coding gene nephronectin
Cpgi13845 3 132929288 to 132929514 226 CpG island CpG island 13845
Gm23196 3 132939870 to 132939976 106 + snRNA gene predicted gene, 23196
D3Mit15 3 132940762 to 132940908 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 15
Tssr35739 3 132948426 to 132948453 27 - TSS region transcription start site region 35739
Cpgi13846 3 132949282 to 132950876 1594 CpG island CpG island 13846
Tssr31767 3 132949416 to 132949417 1 + TSS region transcription start site region 31767
Tssr35740 3 132950167 to 132950181 14 - TSS region transcription start site region 35740
Tssr35741 3 132950189 to 132950198 9 - TSS region transcription start site region 35741
Tssr35742 3 132950223 to 132950226 3 - TSS region transcription start site region 35742
Tssr35743 3 132977207 to 132977211 4 - TSS region transcription start site region 35743
Gstcd 3 132982550 to 133091833 109283 - protein coding gene glutathione S-transferase, C-terminal domain containing
Gm19148 3 133029423 to 133029851 428 + pseudogene predicted gene, 19148
Gm42874 3 133050622 to 133052395 1773 - unclassified gene predicted gene 42874
Gm42873 3 133052545 to 133054270 1725 - unclassified gene predicted gene 42873
Cpgi13847 3 133091180 to 133092322 1142 CpG island CpG island 13847
Tssr35744 3 133091736 to 133091762 26 - TSS region transcription start site region 35744
Tssr35745 3 133091764 to 133091783 19 - TSS region transcription start site region 35745
Tssr35746 3 133091798 to 133091847 49 - TSS region transcription start site region 35746
Tssr31768 3 133091827 to 133091842 15 + TSS region transcription start site region 31768
Tssr31769 3 133091844 to 133091873 29 + TSS region transcription start site region 31769
Ints12 3 133091855 to 133110988 19133 + protein coding gene integrator complex subunit 12
Tssr31770 3 133091886 to 133091907 21 + TSS region transcription start site region 31770
Tssr31771 3 133091923 to 133091953 30 + TSS region transcription start site region 31771
Tssr35747 3 133092029 to 133092039 10 - TSS region transcription start site region 35747
Tssr35748 3 133092045 to 133092054 9 - TSS region transcription start site region 35748
Tssr35749 3 133092378 to 133092394 16 - TSS region transcription start site region 35749
Tssr31772 3 133092570 to 133092611 41 + TSS region transcription start site region 31772
Arhgef38 3 133159529 to 133234889 75360 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 38
Tssr35750 3 133234836 to 133234839 3 - TSS region transcription start site region 35750
Tssr35751 3 133234886 to 133234897 11 - TSS region transcription start site region 35751
Tssr35752 3 133234917 to 133234932 15 - TSS region transcription start site region 35752
Tssr35753 3 133234939 to 133234961 22 - TSS region transcription start site region 35753
Gm43254 3 133307518 to 133310008 2490 - lincRNA gene predicted gene 43254
Cpgi13848 3 133309671 to 133310954 1283 CpG island CpG island 13848
Tssr31773 3 133310088 to 133310091 3 + TSS region transcription start site region 31773
Tssr31774 3 133310093 to 133310145 52 + TSS region transcription start site region 31774
Ppa2 3 133310110 to 133378235 68125 + protein coding gene pyrophosphatase (inorganic) 2
Tssr31775 3 133310164 to 133310169 5 + TSS region transcription start site region 31775
Tssr31776 3 133310181 to 133310218 37 + TSS region transcription start site region 31776
Tssr35754 3 133310584 to 133310661 77 - TSS region transcription start site region 35754
Tssr31777 3 133320924 to 133320968 44 + TSS region transcription start site region 31777
Tssr35755 3 133334096 to 133334097 1 - TSS region transcription start site region 35755
Tssr31778 3 133338944 to 133338971 27 + TSS region transcription start site region 31778
Gm25042 3 133431703 to 133431823 120 - miRNA gene predicted gene, 25042
Tet2 3 133463679 to 133545139 81460 - protein coding gene tet methylcytosine dioxygenase 2
Tssr35756 3 133463907 to 133463910 3 - TSS region transcription start site region 35756
Tssr35757 3 133464264 to 133464268 4 - TSS region transcription start site region 35757
Tssr35758 3 133464943 to 133464947 4 - TSS region transcription start site region 35758
Tssr35759 3 133464982 to 133465026 44 - TSS region transcription start site region 35759
Tssr35760 3 133467743 to 133467756 13 - TSS region transcription start site region 35760
Tssr35761 3 133467767 to 133467780 13 - TSS region transcription start site region 35761
Tssr35762 3 133506657 to 133506686 29 - TSS region transcription start site region 35762
Tssr35763 3 133518772 to 133518785 13 - TSS region transcription start site region 35763
Tssr31779 3 133534369 to 133534381 12 + TSS region transcription start site region 31779
Tssr31780 3 133534402 to 133534413 11 + TSS region transcription start site region 31780
Tssr31781 3 133534416 to 133534426 10 + TSS region transcription start site region 31781
Cpgi13849 3 133543994 to 133545125 1131 CpG island CpG island 13849
Tssr35764 3 133544250 to 133544264 14 - TSS region transcription start site region 35764
Tssr35765 3 133544268 to 133544313 45 - TSS region transcription start site region 35765
Tssr35766 3 133544405 to 133544412 7 - TSS region transcription start site region 35766
Tssr35767 3 133544650 to 133544666 16 - TSS region transcription start site region 35767
Gm42567 3 133545097 to 133585053 39956 + antisense lncRNA gene predicted gene 42567
Tssr35768 3 133545129 to 133545155 26 - TSS region transcription start site region 35768
Tssr35769 3 133545317 to 133545325 8 - TSS region transcription start site region 35769
Gm49316 3 133579627 to 133579901 274 - pseudogene predicted gene 49316
Gm23011 3 133588406 to 133588537 131 - snoRNA gene predicted gene, 23011
Gm37228 3 133623684 to 133634758 11074 - unclassified gene predicted gene, 37228
Gm40153 3 133645808 to 133663391 17583 - lincRNA gene predicted gene, 40153
Tssr31782 3 133646647 to 133646656 9 + TSS region transcription start site region 31782
Tssr35770 3 133663381 to 133663409 28 - TSS region transcription start site region 35770
Tssr31783 3 133666337 to 133666346 9 + TSS region transcription start site region 31783
Tssr35771 3 133749530 to 133749541 11 - TSS region transcription start site region 35771
Gm6135 3 133789515 to 133791504 1989 - lincRNA gene prediticted gene 6135
Tssr35772 3 133791493 to 133791502 9 - TSS region transcription start site region 35772
Tssr35773 3 133791515 to 133791523 8 - TSS region transcription start site region 35773
Gm30484 3 133815919 to 133818518 2599 - lincRNA gene predicted gene, 30484
Gm26691 3 133830621 to 134149286 318665 - antisense lncRNA gene predicted gene, 26691
Gm44361 3 134147015 to 134147108 93 - miRNA gene predicted gene, 44361
Gm43192 3 134160365 to 134191976 31611 + lincRNA gene predicted gene 43192
Gm43193 3 134180911 to 134181351 440 + pseudogene predicted gene 43193
Tssr31784 3 134200064 to 134200090 26 + TSS region transcription start site region 31784
Tssr31785 3 134200142 to 134200152 10 + TSS region transcription start site region 31785
Gm30648 3 134207906 to 134213234 5328 + lincRNA gene predicted gene, 30648
Cpgi13850 3 134235926 to 134236639 713 CpG island CpG island 13850
Tssr31786 3 134236331 to 134236373 42 + TSS region transcription start site region 31786
Cxxc4 3 134236415 to 134262090 25675 + protein coding gene CXXC finger 4
Tssr31787 3 134236483 to 134236500 17 + TSS region transcription start site region 31787
Tssr31788 3 134236533 to 134236542 9 + TSS region transcription start site region 31788
Tssr31789 3 134236585 to 134236594 9 + TSS region transcription start site region 31789
Cpgi13851 3 134239205 to 134240816 1611 CpG island CpG island 13851
Tssr31790 3 134239254 to 134239279 25 + TSS region transcription start site region 31790
Tssr31791 3 134239286 to 134239307 21 + TSS region transcription start site region 31791
Mir1895 3 134240505 to 134240583 78 - miRNA gene microRNA 1895
Tssr35774 3 134249451 to 134249452 1 - TSS region transcription start site region 35774
Tssr31792 3 134259339 to 134259355 16 + TSS region transcription start site region 31792
Gm43559 3 134272045 to 134272510 465 - pseudogene predicted gene 43559
Gm43558 3 134357292 to 134357501 209 + unclassified gene predicted gene 43558
Gm6077 3 134365606 to 134366104 498 - pseudogene predicted gene 6077
4930539C22Rik 3 134404143 to 134423635 19492 - lincRNA gene RIKEN cDNA 4930539C22 gene
Gm26820 3 134462087 to 134630765 168678 - lincRNA gene predicted gene, 26820
Cpgi13852 3 134828903 to 134829753 850 CpG island CpG island 13852
Tssr31793 3 134828993 to 134829015 22 + TSS region transcription start site region 31793
Tacr3 3 134829007 to 134934579 105572 + protein coding gene tachykinin receptor 3
Gm4860 3 134963121 to 134963574 453 + pseudogene predicted gene 4860
Gm43036 3 134965858 to 134967159 1301 + pseudogene predicted gene 43036
Gm43035 3 134971457 to 134971973 516 + pseudogene predicted gene 43035
Gm2142 3 135121861 to 135122446 585 + pseudogene predicted gene 2142
Gm24048 3 135147408 to 135147513 105 + miRNA gene predicted gene, 24048
Gm18546 3 135170629 to 135171304 675 + pseudogene predicted gene, 18546
Gm43033 3 135208987 to 135209411 424 + pseudogene predicted gene 43033
Cpgi13853 3 135212417 to 135213020 603 CpG island CpG island 13853
Cenpe 3 135212537 to 135273540 61003 + protein coding gene centromere protein E
Tssr31794 3 135212557 to 135212585 28 + TSS region transcription start site region 31794
Tssr31795 3 135212596 to 135212652 56 + TSS region transcription start site region 31795
Tssr31796 3 135238045 to 135238058 13 + TSS region transcription start site region 31796
Tssr31797 3 135242243 to 135242253 10 + TSS region transcription start site region 31797
Bdh2 3 135281221 to 135304426 23205 + protein coding gene 3-hydroxybutyrate dehydrogenase, type 2
Tssr31798 3 135281274 to 135281299 25 + TSS region transcription start site region 31798
Tssr31799 3 135281300 to 135281332 32 + TSS region transcription start site region 31799
Gm46826 3 135282046 to 135316253 34207 - lncRNA gene predicted gene, 46826
Tssr31800 3 135298781 to 135298834 53 + TSS region transcription start site region 31800
Tssr31801 3 135298847 to 135298861 14 + TSS region transcription start site region 31801
Tssr31802 3 135298872 to 135298917 45 + TSS region transcription start site region 31802
Tssr31803 3 135298933 to 135298940 7 + TSS region transcription start site region 31803
Tssr31804 3 135307681 to 135307706 25 + TSS region transcription start site region 31804
Slc9b2 3 135307692 to 135342845 35153 + protein coding gene solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2
Tssr31805 3 135307711 to 135307750 39 + TSS region transcription start site region 31805
Tssr31806 3 135348006 to 135348026 20 + TSS region transcription start site region 31806
Slc9b1 3 135348029 to 135397827 49798 + protein coding gene solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
Tssr31807 3 135348030 to 135348085 55 + TSS region transcription start site region 31807
Tssr31808 3 135348088 to 135348095 7 + TSS region transcription start site region 31808
Cisd2 3 135406412 to 135423925 17513 - protein coding gene CDGSH iron sulfur domain 2
Tssr35775 3 135408048 to 135408121 73 - TSS region transcription start site region 35775
Tssr35776 3 135408718 to 135408738 20 - TSS region transcription start site region 35776
Cpgi13854 3 135422770 to 135423728 958 CpG island CpG island 13854
Tssr35777 3 135423381 to 135423453 72 - TSS region transcription start site region 35777
Tssr35778 3 135423475 to 135423486 11 - TSS region transcription start site region 35778
Tssr35779 3 135424047 to 135424084 37 - TSS region transcription start site region 35779
Tssr35780 3 135424096 to 135424098 2 - TSS region transcription start site region 35780
2810428J06Rik 3 135425237 to 135427932 2695 - unclassified gene RIKEN cDNA 2810428J06 gene
Gm43379 3 135428163 to 135435888 7725 - unclassified gene predicted gene 43379
Tssr35781 3 135428473 to 135428477 4 - TSS region transcription start site region 35781
4930539J05Rik 3 135436220 to 135438665 2445 - antisense lncRNA gene RIKEN cDNA 4930539J05 gene
Cpgi13855 3 135437784 to 135439652 1868 CpG island CpG island 13855
Tssr35782 3 135437984 to 135438006 22 - TSS region transcription start site region 35782
Tssr31809 3 135438114 to 135438126 12 + TSS region transcription start site region 31809
Tssr31810 3 135438144 to 135438153 9 + TSS region transcription start site region 31810
Ube2d3 3 135438237 to 135467178 28941 + protein coding gene ubiquitin-conjugating enzyme E2D 3
Tssr31811 3 135438280 to 135438303 23 + TSS region transcription start site region 31811
Tssr31812 3 135438379 to 135438390 11 + TSS region transcription start site region 31812
Tssr31813 3 135438432 to 135438452 20 + TSS region transcription start site region 31813
Tssr31814 3 135438474 to 135438485 11 + TSS region transcription start site region 31814
Tssr31815 3 135438526 to 135438540 14 + TSS region transcription start site region 31815
Tssr31816 3 135438543 to 135438584 41 + TSS region transcription start site region 31816
Tssr35783 3 135438602 to 135438638 36 - TSS region transcription start site region 35783
Tssr35784 3 135438657 to 135438705 48 - TSS region transcription start site region 35784
Tssr31817 3 135438722 to 135438780 58 + TSS region transcription start site region 31817
Tssr31818 3 135439026 to 135439053 27 + TSS region transcription start site region 31818
Tssr31819 3 135439054 to 135439063 9 + TSS region transcription start site region 31819
Tssr31820 3 135439089 to 135439098 9 + TSS region transcription start site region 31820
Tssr31821 3 135439101 to 135439174 73 + TSS region transcription start site region 31821
Tssr31822 3 135439384 to 135439440 56 + TSS region transcription start site region 31822
Tssr31823 3 135439442 to 135439469 27 + TSS region transcription start site region 31823
Tssr31824 3 135439470 to 135439500 30 + TSS region transcription start site region 31824
Tssr1058 3 135440262 to 135440276 14 - TSS region transcription start site region 1058
Tssr35785 3 135440371 to 135440376 5 - TSS region transcription start site region 35785