Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:132333772-134703785

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D3Ertd162e 3 132353742 to 132353946 204 DNA segment DNA segment, Chr 3, ERATO Doi 162, expressed
Gm42880 3 132443673 to 132445548 1875 - lincRNA gene predicted gene 42880
Gm30147 3 132479597 to 132500426 20829 + lncRNA gene predicted gene, 30147
Gm25307 3 132537560 to 132537665 105 - snRNA gene predicted gene, 25307
Tssr1057 3 132592303 to 132592306 3 + TSS region transcription start site region 1057
Tssr31752 3 132629814 to 132629831 17 + TSS region transcription start site region 31752
Gimd1 3 132629820 to 132645351 15531 + protein coding gene GIMAP family P-loop NTPase domain containing 1
Tssr31753 3 132629833 to 132629888 55 + TSS region transcription start site region 31753
Tssr31754 3 132629922 to 132629935 13 + TSS region transcription start site region 31754
Tssr31755 3 132629944 to 132629963 19 + TSS region transcription start site region 31755
Gm9402 3 132655395 to 132655782 387 - pseudogene predicted gene 9402
Tssr35731 3 132655799 to 132655811 12 - TSS region transcription start site region 35731
Aimp1 3 132660498 to 132683879 23381 - protein coding gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 1
Cpgi13843 3 132683724 to 132684457 733 CpG island CpG island 13843
Tssr35732 3 132683824 to 132683856 32 - TSS region transcription start site region 35732
Tssr31756 3 132684106 to 132684145 39 + TSS region transcription start site region 31756
Tbck 3 132684144 to 132841688 157544 + protein coding gene TBC1 domain containing kinase
Tssr31757 3 132684159 to 132684191 32 + TSS region transcription start site region 31757
Tssr35733 3 132717501 to 132717504 3 - TSS region transcription start site region 35733
Tssr31758 3 132724421 to 132724432 11 + TSS region transcription start site region 31758
Tssr31759 3 132737419 to 132737426 7 + TSS region transcription start site region 31759
Tssr31760 3 132743645 to 132743648 3 + TSS region transcription start site region 31760
Tssr31761 3 132766571 to 132766574 3 + TSS region transcription start site region 31761
Gm42872 3 132767407 to 132769373 1966 + unclassified gene predicted gene 42872
Gm30294 3 132772128 to 132782870 10742 - lncRNA gene predicted gene, 30294
Gm22322 3 132787225 to 132787335 110 - snoRNA gene predicted gene, 22322
Tssr35734 3 132791229 to 132791235 6 - TSS region transcription start site region 35734
Gm42876 3 132806253 to 132809467 3214 + unclassified gene predicted gene 42876
Tssr31762 3 132814988 to 132814999 11 + TSS region transcription start site region 31762
Tssr31763 3 132818062 to 132818067 5 + TSS region transcription start site region 31763
Gm29811 3 132842202 to 132878596 36394 - lincRNA gene predicted gene, 29811
Gm9403 3 132842396 to 132844576 2180 + pseudogene predicted gene 9403
Tssr31764 3 132843096 to 132843129 33 + TSS region transcription start site region 31764
Tssr35735 3 132857450 to 132857457 7 - TSS region transcription start site region 35735
Tssr31765 3 132865847 to 132865897 50 + TSS region transcription start site region 31765
Npnt 3 132881745 to 132950291 68546 - protein coding gene nephronectin
Tssr35736 3 132883382 to 132883392 10 - TSS region transcription start site region 35736
Cpgi13844 3 132885715 to 132885960 245 CpG island CpG island 13844
Tssr31766 3 132904814 to 132904866 52 + TSS region transcription start site region 31766
Tssr35737 3 132904865 to 132904983 118 - TSS region transcription start site region 35737
Tssr35738 3 132906754 to 132906765 11 - TSS region transcription start site region 35738
Cpgi13845 3 132929288 to 132929514 226 CpG island CpG island 13845
Gm23196 3 132939870 to 132939976 106 + snRNA gene predicted gene, 23196
D3Mit15 3 132940762 to 132940908 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 15
Tssr35739 3 132948426 to 132948453 27 - TSS region transcription start site region 35739
Cpgi13846 3 132949282 to 132950876 1594 CpG island CpG island 13846
Tssr31767 3 132949416 to 132949417 1 + TSS region transcription start site region 31767
Tssr35740 3 132950167 to 132950181 14 - TSS region transcription start site region 35740
Tssr35741 3 132950189 to 132950198 9 - TSS region transcription start site region 35741
Tssr35742 3 132950223 to 132950226 3 - TSS region transcription start site region 35742
Tssr35743 3 132977207 to 132977211 4 - TSS region transcription start site region 35743
Gstcd 3 132982550 to 133091833 109283 - protein coding gene glutathione S-transferase, C-terminal domain containing
Gm19148 3 133029423 to 133029851 428 + pseudogene predicted gene, 19148
Gm42874 3 133050622 to 133052395 1773 - unclassified gene predicted gene 42874
Gm42873 3 133052545 to 133054270 1725 - unclassified gene predicted gene 42873
Cpgi13847 3 133091180 to 133092322 1142 CpG island CpG island 13847
Tssr35744 3 133091736 to 133091762 26 - TSS region transcription start site region 35744
Tssr35745 3 133091764 to 133091783 19 - TSS region transcription start site region 35745
Tssr35746 3 133091798 to 133091847 49 - TSS region transcription start site region 35746
Tssr31768 3 133091827 to 133091842 15 + TSS region transcription start site region 31768
Tssr31769 3 133091844 to 133091873 29 + TSS region transcription start site region 31769
Ints12 3 133091855 to 133110988 19133 + protein coding gene integrator complex subunit 12
Tssr31770 3 133091886 to 133091907 21 + TSS region transcription start site region 31770
Tssr31771 3 133091923 to 133091953 30 + TSS region transcription start site region 31771
Tssr35747 3 133092029 to 133092039 10 - TSS region transcription start site region 35747
Tssr35748 3 133092045 to 133092054 9 - TSS region transcription start site region 35748
Tssr35749 3 133092378 to 133092394 16 - TSS region transcription start site region 35749
Tssr31772 3 133092570 to 133092611 41 + TSS region transcription start site region 31772
Arhgef38 3 133159529 to 133234889 75360 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 38
Tssr35750 3 133234836 to 133234839 3 - TSS region transcription start site region 35750
Tssr35751 3 133234886 to 133234897 11 - TSS region transcription start site region 35751
Tssr35752 3 133234917 to 133234932 15 - TSS region transcription start site region 35752
Tssr35753 3 133234939 to 133234961 22 - TSS region transcription start site region 35753
Gm43254 3 133307518 to 133310008 2490 - lincRNA gene predicted gene 43254
Cpgi13848 3 133309671 to 133310954 1283 CpG island CpG island 13848
Tssr31773 3 133310088 to 133310091 3 + TSS region transcription start site region 31773
Tssr31774 3 133310093 to 133310145 52 + TSS region transcription start site region 31774
Ppa2 3 133310110 to 133378235 68125 + protein coding gene pyrophosphatase (inorganic) 2
Tssr31775 3 133310164 to 133310169 5 + TSS region transcription start site region 31775
Tssr31776 3 133310181 to 133310218 37 + TSS region transcription start site region 31776
Tssr35754 3 133310584 to 133310661 77 - TSS region transcription start site region 35754
Tssr31777 3 133320924 to 133320968 44 + TSS region transcription start site region 31777
Tssr35755 3 133334096 to 133334097 1 - TSS region transcription start site region 35755
Tssr31778 3 133338944 to 133338971 27 + TSS region transcription start site region 31778
Gm25042 3 133431703 to 133431823 120 - miRNA gene predicted gene, 25042
Tet2 3 133463679 to 133545139 81460 - protein coding gene tet methylcytosine dioxygenase 2
Tssr35756 3 133463907 to 133463910 3 - TSS region transcription start site region 35756
Tssr35757 3 133464264 to 133464268 4 - TSS region transcription start site region 35757
Tssr35758 3 133464943 to 133464947 4 - TSS region transcription start site region 35758
Tssr35759 3 133464982 to 133465026 44 - TSS region transcription start site region 35759
Tssr35760 3 133467743 to 133467756 13 - TSS region transcription start site region 35760
Tssr35761 3 133467767 to 133467780 13 - TSS region transcription start site region 35761
Tssr35762 3 133506657 to 133506686 29 - TSS region transcription start site region 35762
Tssr35763 3 133518772 to 133518785 13 - TSS region transcription start site region 35763
Tssr31779 3 133534369 to 133534381 12 + TSS region transcription start site region 31779
Tssr31780 3 133534402 to 133534413 11 + TSS region transcription start site region 31780
Tssr31781 3 133534416 to 133534426 10 + TSS region transcription start site region 31781
Cpgi13849 3 133543994 to 133545125 1131 CpG island CpG island 13849
Tssr35764 3 133544250 to 133544264 14 - TSS region transcription start site region 35764
Tssr35765 3 133544268 to 133544313 45 - TSS region transcription start site region 35765
Tssr35766 3 133544405 to 133544412 7 - TSS region transcription start site region 35766
Tssr35767 3 133544650 to 133544666 16 - TSS region transcription start site region 35767
Gm42567 3 133545097 to 133585053 39956 + antisense lncRNA gene predicted gene 42567
Tssr35768 3 133545129 to 133545155 26 - TSS region transcription start site region 35768
Tssr35769 3 133545317 to 133545325 8 - TSS region transcription start site region 35769
Gm49316 3 133579627 to 133579901 274 - pseudogene predicted gene 49316
Gm23011 3 133588406 to 133588537 131 - snoRNA gene predicted gene, 23011
Gm37228 3 133623684 to 133634758 11074 - unclassified gene predicted gene, 37228
Gm40153 3 133645808 to 133663391 17583 - lincRNA gene predicted gene, 40153
Tssr31782 3 133646647 to 133646656 9 + TSS region transcription start site region 31782
Tssr35770 3 133663381 to 133663409 28 - TSS region transcription start site region 35770
Tssr31783 3 133666337 to 133666346 9 + TSS region transcription start site region 31783
Tssr35771 3 133749530 to 133749541 11 - TSS region transcription start site region 35771
Gm6135 3 133789515 to 133791504 1989 - lincRNA gene prediticted gene 6135
Tssr35772 3 133791493 to 133791502 9 - TSS region transcription start site region 35772
Tssr35773 3 133791515 to 133791523 8 - TSS region transcription start site region 35773
Gm30484 3 133815919 to 133818518 2599 - lincRNA gene predicted gene, 30484
Gm26691 3 133830621 to 134149286 318665 - antisense lncRNA gene predicted gene, 26691
Gm44361 3 134147015 to 134147108 93 - miRNA gene predicted gene, 44361
Gm43192 3 134160365 to 134191976 31611 + lincRNA gene predicted gene 43192
Gm43193 3 134180911 to 134181351 440 + pseudogene predicted gene 43193
Tssr31784 3 134200064 to 134200090 26 + TSS region transcription start site region 31784
Tssr31785 3 134200142 to 134200152 10 + TSS region transcription start site region 31785
Gm30648 3 134207906 to 134213234 5328 + lincRNA gene predicted gene, 30648
Cpgi13850 3 134235926 to 134236639 713 CpG island CpG island 13850
Tssr31786 3 134236331 to 134236373 42 + TSS region transcription start site region 31786
Cxxc4 3 134236415 to 134262090 25675 + protein coding gene CXXC finger 4
Tssr31787 3 134236483 to 134236500 17 + TSS region transcription start site region 31787
Tssr31788 3 134236533 to 134236542 9 + TSS region transcription start site region 31788
Tssr31789 3 134236585 to 134236594 9 + TSS region transcription start site region 31789
Cpgi13851 3 134239205 to 134240816 1611 CpG island CpG island 13851
Tssr31790 3 134239254 to 134239279 25 + TSS region transcription start site region 31790
Tssr31791 3 134239286 to 134239307 21 + TSS region transcription start site region 31791
Mir1895 3 134240505 to 134240583 78 - miRNA gene microRNA 1895
Tssr35774 3 134249451 to 134249452 1 - TSS region transcription start site region 35774
Tssr31792 3 134259339 to 134259355 16 + TSS region transcription start site region 31792
Gm43559 3 134272045 to 134272510 465 - pseudogene predicted gene 43559
Gm43558 3 134357292 to 134357501 209 + unclassified gene predicted gene 43558
Gm6077 3 134365606 to 134366104 498 - pseudogene predicted gene 6077
4930539C22Rik 3 134404143 to 134423635 19492 - lincRNA gene RIKEN cDNA 4930539C22 gene
Gm26820 3 134462087 to 134630765 168678 - lincRNA gene predicted gene, 26820