Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:13224161-14624435

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37813 3 13288197 to 13291891 3694 + unclassified gene predicted gene, 37813
Gm37197 3 13429558 to 13429958 400 + pseudogene predicted gene, 37197
Gm2464 3 13470439 to 13471829 1390 - lincRNA gene predicted gene 2464
Cpgi12985 3 13471360 to 13472187 827 CpG island CpG island 12985
Tssr28377 3 13471608 to 13471635 27 + TSS region transcription start site region 28377
Tssr28378 3 13471637 to 13471733 96 + TSS region transcription start site region 28378
Ralyl 3 13471655 to 14182287 710632 + protein coding gene RALY RNA binding protein-like
Tssr28379 3 13471747 to 13471758 11 + TSS region transcription start site region 28379
Tssr28380 3 13472023 to 13472030 7 + TSS region transcription start site region 28380
Tssr28381 3 13472450 to 13472469 19 + TSS region transcription start site region 28381
Tssr821 3 13472633 to 13472670 37 + TSS region transcription start site region 821
Cpgi12986 3 13472730 to 13473423 693 CpG island CpG island 12986
Tssr28382 3 13472871 to 13472927 56 + TSS region transcription start site region 28382
Tssr28383 3 13473205 to 13473218 13 + TSS region transcription start site region 28383
Tssr28384 3 13510011 to 13510016 5 + TSS region transcription start site region 28384
Tssr28385 3 13525946 to 13525947 1 + TSS region transcription start site region 28385
4930539N22Rik 3 13597139 to 13652865 55726 - lncRNA gene RIKEN cDNA 4930539N22 gene
Tssr28386 3 13610508 to 13610511 3 + TSS region transcription start site region 28386
Gm37164 3 13669509 to 13670145 636 - pseudogene predicted gene, 37164
Tssr28387 3 13748927 to 13748930 3 + TSS region transcription start site region 28387
Gm2474 3 13749938 to 13750483 545 + pseudogene predicted gene 2474
Tssr28388 3 13781746 to 13781750 4 + TSS region transcription start site region 28388
Tssr28389 3 13833436 to 13833445 9 + TSS region transcription start site region 28389
Gm19114 3 13838875 to 13840231 1356 - pseudogene predicted gene, 19114
Gm25981 3 13845686 to 13845980 294 + unclassified non-coding RNA gene predicted gene, 25981
C230073O14Rik 3 13847734 to 13850863 3129 unclassified gene RIKEN cDNA C230073O14 gene
Tssr28390 3 13884944 to 13884948 4 + TSS region transcription start site region 28390
Gm41998 3 13914161 to 13934435 20274 - lncRNA gene predicted gene, 41998
Tssr32631 3 13933883 to 13933906 23 - TSS region transcription start site region 32631
Tssr28391 3 13946368 to 13946379 11 + TSS region transcription start site region 28391
Tssr28392 3 13946385 to 13946416 31 + TSS region transcription start site region 28392
Gm22026 3 14029482 to 14029762 280 - unclassified non-coding RNA gene predicted gene, 22026
Gm18661 3 14098042 to 14099016 974 + pseudogene predicted gene, 18661
Gm19067 3 14150147 to 14150785 638 + pseudogene predicted gene, 19067
Gm18659 3 14163685 to 14164632 947 - pseudogene predicted gene, 18659
Gm23112 3 14267315 to 14267439 124 - snoRNA gene predicted gene, 23112
Gm38311 3 14330227 to 14330391 164 + pseudogene predicted gene, 38311
Gm6300 3 14363117 to 14374239 11122 + pseudogene predicted gene 6300
Gm37358 3 14383922 to 14384400 478 - pseudogene predicted gene, 37358
Tssr32632 3 14384430 to 14384448 18 - TSS region transcription start site region 32632
Gm8955 3 14428492 to 14435009 6517 - pseudogene predicted gene 8955
Slc7a12 3 14480691 to 14505819 25128 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
Tssr28393 3 14480692 to 14480707 15 + TSS region transcription start site region 28393
Tssr28394 3 14481263 to 14481306 43 + TSS region transcription start site region 28394
Tssr28395 3 14481382 to 14481392 10 + TSS region transcription start site region 28395
Tssr822 3 14504457 to 14504461 4 + TSS region transcription start site region 822
Tssr28396 3 14506094 to 14506102 8 + TSS region transcription start site region 28396
Tssr28397 3 14506183 to 14506192 9 + TSS region transcription start site region 28397
Tssr28398 3 14506290 to 14506301 11 + TSS region transcription start site region 28398
Tssr28399 3 14506446 to 14506457 11 + TSS region transcription start site region 28399
Tssr28400 3 14506637 to 14506655 18 + TSS region transcription start site region 28400
Tssr28401 3 14506658 to 14506661 3 + TSS region transcription start site region 28401
Tssr28402 3 14507927 to 14507936 9 + TSS region transcription start site region 28402
Gm8957 3 14511084 to 14512095 1011 - pseudogene predicted gene 8957
Tssr28403 3 14530627 to 14530656 29 + TSS region transcription start site region 28403
Cpgi12987 3 14533694 to 14534351 657 CpG island CpG island 12987
Tssr32633 3 14533778 to 14533818 40 - TSS region transcription start site region 32633
Lrrcc1 3 14533788 to 14572658 38870 + protein coding gene leucine rich repeat and coiled-coil domain containing 1
Tssr28404 3 14533804 to 14533815 11 + TSS region transcription start site region 28404
Tssr28405 3 14533817 to 14533866 49 + TSS region transcription start site region 28405
Tssr28406 3 14533867 to 14533889 22 + TSS region transcription start site region 28406
Tssr28407 3 14533907 to 14533920 13 + TSS region transcription start site region 28407
Gm17119 3 14564402 to 14564681 279 + pseudogene predicted gene 17119
Cpgi12988 3 14578339 to 14579281 942 CpG island CpG island 12988
Tssr28408 3 14578609 to 14578687 78 + TSS region transcription start site region 28408
E2f5 3 14578641 to 14606309 27668 + protein coding gene E2F transcription factor 5
Tssr28409 3 14578741 to 14578759 18 + TSS region transcription start site region 28409
Tssr28410 3 14578786 to 14578807 21 + TSS region transcription start site region 28410
Tssr28411 3 14578891 to 14578925 34 + TSS region transcription start site region 28411
Tssr28412 3 14603734 to 14603764 30 + TSS region transcription start site region 28412
Rbis 3 14606289 to 14611256 4967 - protein coding gene ribosomal biogenesis factor
Cpgi12989 3 14611020 to 14611799 779 CpG island CpG island 12989
Tssr32634 3 14611201 to 14611212 11 - TSS region transcription start site region 32634
Tssr32635 3 14611250 to 14611275 25 - TSS region transcription start site region 32635