Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:131533742-133173946

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13840 3 131564418 to 131565416 998 CpG island CpG island 13840
Papss1 3 131564768 to 131643671 78903 + protein coding gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1
Tssr31739 3 131564776 to 131564788 12 + TSS region transcription start site region 31739
Tssr31740 3 131564839 to 131564849 10 + TSS region transcription start site region 31740
Tssr31741 3 131564857 to 131564883 26 + TSS region transcription start site region 31741
Tssr31742 3 131564887 to 131564910 23 + TSS region transcription start site region 31742
D3Mit82 3 131577852 to 131578010 158 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 82
Gm36917 3 131587586 to 131589459 1873 + lncRNA gene predicted gene, 36917
Gm42881 3 131610437 to 131613780 3343 - unclassified gene predicted gene 42881
Tssr35728 3 131613726 to 131613739 13 - TSS region transcription start site region 35728
Tssr35729 3 131613750 to 131613766 16 - TSS region transcription start site region 35729
Tssr35730 3 131613774 to 131613785 11 - TSS region transcription start site region 35730
Tssr31743 3 131637737 to 131637781 44 + TSS region transcription start site region 31743
Tssr31744 3 131638363 to 131638368 5 + TSS region transcription start site region 31744
Tssr31745 3 131638426 to 131638443 17 + TSS region transcription start site region 31745
Gm29865 3 131893134 to 131985102 91968 + lincRNA gene predicted gene, 29865
Olfr375-ps1 3 131899080 to 131899328 248 - pseudogene olfactory receptor 375, pseudogene 1
D3Mit110 3 131906318 to 131906461 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 110
Mhdadsk8 3 131906318 to 143250921 11344603 heritable phenotypic marker Martin Hrabe de Angelis dark skin 8
Mhdadsk6 3 131906318 to 143250921 11344603 heritable phenotypic marker Martin Hrabe de Angelis dark skin 6
Gm26103 3 131918259 to 131918353 94 + snRNA gene predicted gene, 26103
Gm29949 3 132007346 to 132058151 50805 + lncRNA gene predicted gene, 29949
Tssr31746 3 132007479 to 132007492 13 + TSS region transcription start site region 31746
D3Mit14 3 132030856 to 132031023 167 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 14
Eae10 3 132030856 to 148745542 16714686 QTL experimental allergic encephalomyelitis susceptibility 10
Bdt2 3 132030856 to 132031023 167 QTL bone density traits 2
Ccs3 3 132048775 to 146311914 14263139 QTL colon cancer susceptibility 3
D3Mit254 3 132048775 to 132048924 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 254
Gm22421 3 132082286 to 132082392 106 - snRNA gene predicted gene, 22421
Cpgi13841 3 132085227 to 132086195 968 CpG island CpG island 13841
Tssr31747 3 132085281 to 132085299 18 + TSS region transcription start site region 31747
Dkk2 3 132085292 to 132180304 95012 + protein coding gene dickkopf WNT signaling pathway inhibitor 2
Tssr31748 3 132085450 to 132085455 5 + TSS region transcription start site region 31748
Tssr31749 3 132085779 to 132085814 35 + TSS region transcription start site region 31749
Cpgi13842 3 132086966 to 132087566 600 CpG island CpG island 13842
D3Nds2 3 132104039 to 132104150 111 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 2
D3Nds3 3 132108774 to 132108933 159 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 3
Tssr31750 3 132120120 to 132120130 10 + TSS region transcription start site region 31750
Tssr31751 3 132154919 to 132154923 4 + TSS region transcription start site region 31751
D3Ertd162e 3 132353742 to 132353946 204 DNA segment DNA segment, Chr 3, ERATO Doi 162, expressed
Gm42880 3 132443673 to 132445548 1875 - lincRNA gene predicted gene 42880
Gm30147 3 132479597 to 132500426 20829 + lncRNA gene predicted gene, 30147
Gm25307 3 132537560 to 132537665 105 - snRNA gene predicted gene, 25307
Tssr1057 3 132592303 to 132592306 3 + TSS region transcription start site region 1057
Tssr31752 3 132629814 to 132629831 17 + TSS region transcription start site region 31752
Gimd1 3 132629820 to 132645351 15531 + protein coding gene GIMAP family P-loop NTPase domain containing 1
Tssr31753 3 132629833 to 132629888 55 + TSS region transcription start site region 31753
Tssr31754 3 132629922 to 132629935 13 + TSS region transcription start site region 31754
Tssr31755 3 132629944 to 132629963 19 + TSS region transcription start site region 31755
Gm9402 3 132655395 to 132655782 387 - pseudogene predicted gene 9402
Tssr35731 3 132655799 to 132655811 12 - TSS region transcription start site region 35731
Aimp1 3 132660498 to 132683879 23381 - protein coding gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 1
Cpgi13843 3 132683724 to 132684457 733 CpG island CpG island 13843
Tssr35732 3 132683824 to 132683856 32 - TSS region transcription start site region 35732
Tssr31756 3 132684106 to 132684145 39 + TSS region transcription start site region 31756
Tbck 3 132684144 to 132841688 157544 + protein coding gene TBC1 domain containing kinase
Tssr31757 3 132684159 to 132684191 32 + TSS region transcription start site region 31757
Tssr35733 3 132717501 to 132717504 3 - TSS region transcription start site region 35733
Tssr31758 3 132724421 to 132724432 11 + TSS region transcription start site region 31758
Tssr31759 3 132737419 to 132737426 7 + TSS region transcription start site region 31759
Tssr31760 3 132743645 to 132743648 3 + TSS region transcription start site region 31760
Tssr31761 3 132766571 to 132766574 3 + TSS region transcription start site region 31761
Gm42872 3 132767407 to 132769373 1966 + unclassified gene predicted gene 42872
Gm30294 3 132772128 to 132782870 10742 - lncRNA gene predicted gene, 30294
Gm22322 3 132787225 to 132787335 110 - snoRNA gene predicted gene, 22322
Tssr35734 3 132791229 to 132791235 6 - TSS region transcription start site region 35734
Gm42876 3 132806253 to 132809467 3214 + unclassified gene predicted gene 42876
Tssr31762 3 132814988 to 132814999 11 + TSS region transcription start site region 31762
Tssr31763 3 132818062 to 132818067 5 + TSS region transcription start site region 31763
Gm29811 3 132842202 to 132878596 36394 - lincRNA gene predicted gene, 29811
Gm9403 3 132842396 to 132844576 2180 + pseudogene predicted gene 9403
Tssr31764 3 132843096 to 132843129 33 + TSS region transcription start site region 31764
Tssr35735 3 132857450 to 132857457 7 - TSS region transcription start site region 35735
Tssr31765 3 132865847 to 132865897 50 + TSS region transcription start site region 31765
Npnt 3 132881745 to 132950291 68546 - protein coding gene nephronectin
Tssr35736 3 132883382 to 132883392 10 - TSS region transcription start site region 35736
Cpgi13844 3 132885715 to 132885960 245 CpG island CpG island 13844
Tssr31766 3 132904814 to 132904866 52 + TSS region transcription start site region 31766
Tssr35737 3 132904865 to 132904983 118 - TSS region transcription start site region 35737
Tssr35738 3 132906754 to 132906765 11 - TSS region transcription start site region 35738
Cpgi13845 3 132929288 to 132929514 226 CpG island CpG island 13845
Gm23196 3 132939870 to 132939976 106 + snRNA gene predicted gene, 23196
D3Mit15 3 132940762 to 132940908 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 15
Tssr35739 3 132948426 to 132948453 27 - TSS region transcription start site region 35739
Cpgi13846 3 132949282 to 132950876 1594 CpG island CpG island 13846
Tssr31767 3 132949416 to 132949417 1 + TSS region transcription start site region 31767
Tssr35740 3 132950167 to 132950181 14 - TSS region transcription start site region 35740
Tssr35741 3 132950189 to 132950198 9 - TSS region transcription start site region 35741
Tssr35742 3 132950223 to 132950226 3 - TSS region transcription start site region 35742
Tssr35743 3 132977207 to 132977211 4 - TSS region transcription start site region 35743
Gstcd 3 132982550 to 133091833 109283 - protein coding gene glutathione S-transferase, C-terminal domain containing
Gm19148 3 133029423 to 133029851 428 + pseudogene predicted gene, 19148
Gm42874 3 133050622 to 133052395 1773 - unclassified gene predicted gene 42874
Gm42873 3 133052545 to 133054270 1725 - unclassified gene predicted gene 42873
Cpgi13847 3 133091180 to 133092322 1142 CpG island CpG island 13847
Tssr35744 3 133091736 to 133091762 26 - TSS region transcription start site region 35744
Tssr35745 3 133091764 to 133091783 19 - TSS region transcription start site region 35745
Tssr35746 3 133091798 to 133091847 49 - TSS region transcription start site region 35746
Tssr31768 3 133091827 to 133091842 15 + TSS region transcription start site region 31768
Tssr31769 3 133091844 to 133091873 29 + TSS region transcription start site region 31769
Ints12 3 133091855 to 133110988 19133 + protein coding gene integrator complex subunit 12
Tssr31770 3 133091886 to 133091907 21 + TSS region transcription start site region 31770
Tssr31771 3 133091923 to 133091953 30 + TSS region transcription start site region 31771
Tssr35747 3 133092029 to 133092039 10 - TSS region transcription start site region 35747
Tssr35748 3 133092045 to 133092054 9 - TSS region transcription start site region 35748
Tssr35749 3 133092378 to 133092394 16 - TSS region transcription start site region 35749
Tssr31772 3 133092570 to 133092611 41 + TSS region transcription start site region 31772
Arhgef38 3 133159529 to 133234889 75360 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 38