Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:131122538-131483466

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lef1 3 131110471 to 131224356 113885 + protein coding gene lymphoid enhancer binding factor 1
Tssr31706 3 131123741 to 131123776 35 + TSS region transcription start site region 31706
Tssr1051 3 131127566 to 131127578 12 + TSS region transcription start site region 1051
D3Mit290 3 131127782 to 131127906 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 290
Tssr31707 3 131133263 to 131133267 4 + TSS region transcription start site region 31707
Tssr31708 3 131134453 to 131134459 6 + TSS region transcription start site region 31708
Tssr31709 3 131136146 to 131136150 4 + TSS region transcription start site region 31709
Gm42449 3 131136785 to 131139042 2257 + unclassified gene predicted gene 42449
Tssr31710 3 131156286 to 131156300 14 + TSS region transcription start site region 31710
Tssr31711 3 131156307 to 131156344 37 + TSS region transcription start site region 31711
Tssr31712 3 131156355 to 131156366 11 + TSS region transcription start site region 31712
Tssr31713 3 131156449 to 131156457 8 + TSS region transcription start site region 31713
Tssr31714 3 131156458 to 131156470 12 + TSS region transcription start site region 31714
Tssr31715 3 131159715 to 131159730 15 + TSS region transcription start site region 31715
Tssr31716 3 131170420 to 131170436 16 + TSS region transcription start site region 31716
Tssr35679 3 131171439 to 131171442 3 - TSS region transcription start site region 35679
Tssr31717 3 131171702 to 131171726 24 + TSS region transcription start site region 31717
Tssr31718 3 131184654 to 131184701 47 + TSS region transcription start site region 31718
Tssr31719 3 131189271 to 131189276 5 + TSS region transcription start site region 31719
Tssr31720 3 131189791 to 131189795 4 + TSS region transcription start site region 31720
6720418B01Rik 3 131191842 to 131192965 1123 unclassified gene RIKEN cDNA 6720418B01 gene
Tssr31721 3 131200106 to 131200145 39 + TSS region transcription start site region 31721
Tssr31722 3 131206520 to 131206524 4 + TSS region transcription start site region 31722
Tssr31723 3 131222791 to 131222793 2 + TSS region transcription start site region 31723
Tssr31724 3 131223828 to 131223837 9 + TSS region transcription start site region 31724
Tssr31725 3 131223938 to 131223951 13 + TSS region transcription start site region 31725
Hadh 3 131233419 to 131272101 38682 - protein coding gene hydroxyacyl-Coenzyme A dehydrogenase
Tssr35680 3 131233906 to 131233920 14 - TSS region transcription start site region 35680
Tssr35681 3 131234027 to 131234034 7 - TSS region transcription start site region 35681
Tssr35682 3 131234078 to 131234087 9 - TSS region transcription start site region 35682
Tssr35683 3 131234157 to 131234182 25 - TSS region transcription start site region 35683
Cpgi13833 3 131271588 to 131272333 745 CpG island CpG island 13833
Tssr35684 3 131272009 to 131272073 64 - TSS region transcription start site region 35684
Tssr35685 3 131272077 to 131272078 1 - TSS region transcription start site region 35685
Tssr35686 3 131272805 to 131272855 50 - TSS region transcription start site region 35686
Cpgi13834 3 131278040 to 131278215 175 CpG island CpG island 13834
Gm18492 3 131284166 to 131284803 637 - pseudogene predicted gene, 18492
Cyp2u1 3 131290491 to 131303227 12736 - protein coding gene cytochrome P450, family 2, subfamily u, polypeptide 1
Cpgi13835 3 131302538 to 131303466 928 CpG island CpG island 13835
4930534D22Rik 3 131302643 to 131316661 14018 + antisense lncRNA gene RIKEN cDNA 4930534D22 gene
Tssr35687 3 131303144 to 131303223 79 - TSS region transcription start site region 35687
Sgms2 3 131318985 to 131491271 172286 - protein coding gene sphingomyelin synthase 2
Tssr35688 3 131321381 to 131321384 3 - TSS region transcription start site region 35688
Tssr35689 3 131322468 to 131322472 4 - TSS region transcription start site region 35689
Cpgi13836 3 131329974 to 131330427 453 CpG island CpG island 13836
Tssr35690 3 131343489 to 131343508 19 - TSS region transcription start site region 35690
Tssr35691 3 131344892 to 131344926 34 - TSS region transcription start site region 35691
Tssr1052 3 131357770 to 131357776 6 - TSS region transcription start site region 1052
Gm43116 3 131360556 to 131360750 194 + pseudogene predicted gene 43116
Cpgi13837 3 131363702 to 131363925 223 CpG island CpG island 13837
Tssr35692 3 131364734 to 131364740 6 - TSS region transcription start site region 35692
Cpgi13838 3 131364844 to 131365091 247 CpG island CpG island 13838
Tssr1053 3 131368726 to 131368734 8 - TSS region transcription start site region 1053
Tssr31726 3 131368970 to 131368979 9 + TSS region transcription start site region 31726
Tssr31727 3 131368989 to 131369000 11 + TSS region transcription start site region 31727
Tssr31728 3 131369001 to 131369016 15 + TSS region transcription start site region 31728
Tssr35693 3 131466255 to 131466260 5 - TSS region transcription start site region 35693
Tssr31729 3 131466538 to 131466544 6 + TSS region transcription start site region 31729
Tssr31730 3 131466663 to 131466680 17 + TSS region transcription start site region 31730
Tssr31731 3 131466703 to 131466710 7 + TSS region transcription start site region 31731
Tssr35694 3 131470862 to 131470866 4 - TSS region transcription start site region 35694
Tssr35695 3 131470946 to 131470951 5 - TSS region transcription start site region 35695
Tssr35696 3 131470958 to 131470959 1 - TSS region transcription start site region 35696
Tssr35697 3 131470964 to 131470974 10 - TSS region transcription start site region 35697
Tssr35698 3 131470977 to 131470988 11 - TSS region transcription start site region 35698
Tssr35699 3 131471004 to 131471015 11 - TSS region transcription start site region 35699
Tssr31732 3 131471205 to 131471222 17 + TSS region transcription start site region 31732
Tssr35700 3 131472970 to 131473003 33 - TSS region transcription start site region 35700
Tssr31733 3 131473067 to 131473071 4 + TSS region transcription start site region 31733
Tssr35701 3 131474422 to 131474425 3 - TSS region transcription start site region 35701
Tssr35702 3 131474507 to 131474514 7 - TSS region transcription start site region 35702
Tssr35703 3 131474559 to 131474570 11 - TSS region transcription start site region 35703
Tssr35704 3 131474579 to 131474596 17 - TSS region transcription start site region 35704
Tssr1054 3 131474616 to 131474617 1 - TSS region transcription start site region 1054
Tssr35705 3 131474618 to 131474630 12 - TSS region transcription start site region 35705
Tssr35706 3 131474770 to 131474792 22 - TSS region transcription start site region 35706
Tssr31734 3 131476241 to 131476243 2 + TSS region transcription start site region 31734