Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:131118645-134368648

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285 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lef1 3 131110471 to 131224356 113885 + protein coding gene lymphoid enhancer binding factor 1
Tssr31706 3 131123741 to 131123776 35 + TSS region transcription start site region 31706
Tssr1051 3 131127566 to 131127578 12 + TSS region transcription start site region 1051
D3Mit290 3 131127782 to 131127906 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 290
Tssr31707 3 131133263 to 131133267 4 + TSS region transcription start site region 31707
Tssr31708 3 131134453 to 131134459 6 + TSS region transcription start site region 31708
Tssr31709 3 131136146 to 131136150 4 + TSS region transcription start site region 31709
Gm42449 3 131136785 to 131139042 2257 + unclassified gene predicted gene 42449
Tssr31710 3 131156286 to 131156300 14 + TSS region transcription start site region 31710
Tssr31711 3 131156307 to 131156344 37 + TSS region transcription start site region 31711
Tssr31712 3 131156355 to 131156366 11 + TSS region transcription start site region 31712
Tssr31713 3 131156449 to 131156457 8 + TSS region transcription start site region 31713
Tssr31714 3 131156458 to 131156470 12 + TSS region transcription start site region 31714
Tssr31715 3 131159715 to 131159730 15 + TSS region transcription start site region 31715
Tssr31716 3 131170420 to 131170436 16 + TSS region transcription start site region 31716
Tssr35679 3 131171439 to 131171442 3 - TSS region transcription start site region 35679
Tssr31717 3 131171702 to 131171726 24 + TSS region transcription start site region 31717
Tssr31718 3 131184654 to 131184701 47 + TSS region transcription start site region 31718
Tssr31719 3 131189271 to 131189276 5 + TSS region transcription start site region 31719
Tssr31720 3 131189791 to 131189795 4 + TSS region transcription start site region 31720
6720418B01Rik 3 131191842 to 131192965 1123 unclassified gene RIKEN cDNA 6720418B01 gene
Tssr31721 3 131200106 to 131200145 39 + TSS region transcription start site region 31721
Tssr31722 3 131206520 to 131206524 4 + TSS region transcription start site region 31722
Tssr31723 3 131222791 to 131222793 2 + TSS region transcription start site region 31723
Tssr31724 3 131223828 to 131223837 9 + TSS region transcription start site region 31724
Tssr31725 3 131223938 to 131223951 13 + TSS region transcription start site region 31725
Hadh 3 131233419 to 131272101 38682 - protein coding gene hydroxyacyl-Coenzyme A dehydrogenase
Tssr35680 3 131233906 to 131233920 14 - TSS region transcription start site region 35680
Tssr35681 3 131234027 to 131234034 7 - TSS region transcription start site region 35681
Tssr35682 3 131234078 to 131234087 9 - TSS region transcription start site region 35682
Tssr35683 3 131234157 to 131234182 25 - TSS region transcription start site region 35683
Cpgi13833 3 131271588 to 131272333 745 CpG island CpG island 13833
Tssr35684 3 131272009 to 131272073 64 - TSS region transcription start site region 35684
Tssr35685 3 131272077 to 131272078 1 - TSS region transcription start site region 35685
Tssr35686 3 131272805 to 131272855 50 - TSS region transcription start site region 35686
Cpgi13834 3 131278040 to 131278215 175 CpG island CpG island 13834
Gm18492 3 131284166 to 131284803 637 - pseudogene predicted gene, 18492
Cyp2u1 3 131290491 to 131303227 12736 - protein coding gene cytochrome P450, family 2, subfamily u, polypeptide 1
Cpgi13835 3 131302538 to 131303466 928 CpG island CpG island 13835
4930534D22Rik 3 131302643 to 131316661 14018 + antisense lncRNA gene RIKEN cDNA 4930534D22 gene
Tssr35687 3 131303144 to 131303223 79 - TSS region transcription start site region 35687
Sgms2 3 131318985 to 131491271 172286 - protein coding gene sphingomyelin synthase 2
Tssr35688 3 131321381 to 131321384 3 - TSS region transcription start site region 35688
Tssr35689 3 131322468 to 131322472 4 - TSS region transcription start site region 35689
Cpgi13836 3 131329974 to 131330427 453 CpG island CpG island 13836
Tssr35690 3 131343489 to 131343508 19 - TSS region transcription start site region 35690
Tssr35691 3 131344892 to 131344926 34 - TSS region transcription start site region 35691
Tssr1052 3 131357770 to 131357776 6 - TSS region transcription start site region 1052
Gm43116 3 131360556 to 131360750 194 + pseudogene predicted gene 43116
Cpgi13837 3 131363702 to 131363925 223 CpG island CpG island 13837
Tssr35692 3 131364734 to 131364740 6 - TSS region transcription start site region 35692
Cpgi13838 3 131364844 to 131365091 247 CpG island CpG island 13838
Tssr1053 3 131368726 to 131368734 8 - TSS region transcription start site region 1053
Tssr31726 3 131368970 to 131368979 9 + TSS region transcription start site region 31726
Tssr31727 3 131368989 to 131369000 11 + TSS region transcription start site region 31727
Tssr31728 3 131369001 to 131369016 15 + TSS region transcription start site region 31728
Tssr35693 3 131466255 to 131466260 5 - TSS region transcription start site region 35693
Tssr31729 3 131466538 to 131466544 6 + TSS region transcription start site region 31729
Tssr31730 3 131466663 to 131466680 17 + TSS region transcription start site region 31730
Tssr31731 3 131466703 to 131466710 7 + TSS region transcription start site region 31731
Tssr35694 3 131470862 to 131470866 4 - TSS region transcription start site region 35694
Tssr35695 3 131470946 to 131470951 5 - TSS region transcription start site region 35695
Tssr35696 3 131470958 to 131470959 1 - TSS region transcription start site region 35696
Tssr35697 3 131470964 to 131470974 10 - TSS region transcription start site region 35697
Tssr35698 3 131470977 to 131470988 11 - TSS region transcription start site region 35698
Tssr35699 3 131471004 to 131471015 11 - TSS region transcription start site region 35699
Tssr31732 3 131471205 to 131471222 17 + TSS region transcription start site region 31732
Tssr35700 3 131472970 to 131473003 33 - TSS region transcription start site region 35700
Tssr31733 3 131473067 to 131473071 4 + TSS region transcription start site region 31733
Tssr35701 3 131474422 to 131474425 3 - TSS region transcription start site region 35701
Tssr35702 3 131474507 to 131474514 7 - TSS region transcription start site region 35702
Tssr35703 3 131474559 to 131474570 11 - TSS region transcription start site region 35703
Tssr35704 3 131474579 to 131474596 17 - TSS region transcription start site region 35704
Tssr1054 3 131474616 to 131474617 1 - TSS region transcription start site region 1054
Tssr35705 3 131474618 to 131474630 12 - TSS region transcription start site region 35705
Tssr35706 3 131474770 to 131474792 22 - TSS region transcription start site region 35706
Tssr31734 3 131476241 to 131476243 2 + TSS region transcription start site region 31734
Tssr35707 3 131489001 to 131489021 20 - TSS region transcription start site region 35707
Tssr35708 3 131489035 to 131489050 15 - TSS region transcription start site region 35708
Cpgi13839 3 131489612 to 131490938 1326 CpG island CpG island 13839
Tssr1055 3 131489712 to 131489729 17 + TSS region transcription start site region 1055
Tssr31735 3 131489737 to 131489753 16 + TSS region transcription start site region 31735
Tssr35709 3 131489747 to 131489757 10 - TSS region transcription start site region 35709
Tssr35710 3 131489763 to 131489774 11 - TSS region transcription start site region 35710
Tssr35711 3 131489911 to 131489936 25 - TSS region transcription start site region 35711
Tssr35712 3 131489937 to 131489966 29 - TSS region transcription start site region 35712
Tssr1056 3 131490005 to 131490031 26 + TSS region transcription start site region 1056
Tssr35713 3 131490178 to 131490235 57 - TSS region transcription start site region 35713
Tssr31736 3 131490351 to 131490405 54 + TSS region transcription start site region 31736
Tssr35714 3 131490452 to 131490495 43 - TSS region transcription start site region 35714
Tssr35715 3 131490510 to 131490531 21 - TSS region transcription start site region 35715
Gm36753 3 131490585 to 131499178 8593 + lncRNA gene predicted gene, 36753
Tssr35716 3 131490653 to 131490666 13 - TSS region transcription start site region 35716
Tssr35717 3 131490729 to 131490742 13 - TSS region transcription start site region 35717
Tssr35718 3 131490747 to 131490768 21 - TSS region transcription start site region 35718
Tssr35719 3 131490990 to 131491011 21 - TSS region transcription start site region 35719
Tssr35720 3 131491053 to 131491057 4 - TSS region transcription start site region 35720
Tssr35721 3 131491275 to 131491288 13 - TSS region transcription start site region 35721
Tssr35722 3 131491327 to 131491336 9 - TSS region transcription start site region 35722
Tssr35723 3 131491386 to 131491398 12 - TSS region transcription start site region 35723
Tssr35724 3 131491399 to 131491409 10 - TSS region transcription start site region 35724
Tssr35725 3 131491437 to 131491448 11 - TSS region transcription start site region 35725
Tssr31737 3 131491559 to 131491568 9 + TSS region transcription start site region 31737
Tssr31738 3 131496904 to 131496910 6 + TSS region transcription start site region 31738
Tssr35726 3 131504902 to 131504909 7 - TSS region transcription start site region 35726
Tssr35727 3 131504944 to 131504954 10 - TSS region transcription start site region 35727
Gm36863 3 131509133 to 131511149 2016 + lncRNA gene predicted gene, 36863
Cpgi13840 3 131564418 to 131565416 998 CpG island CpG island 13840
Papss1 3 131564768 to 131643671 78903 + protein coding gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1
Tssr31739 3 131564776 to 131564788 12 + TSS region transcription start site region 31739
Tssr31740 3 131564839 to 131564849 10 + TSS region transcription start site region 31740
Tssr31741 3 131564857 to 131564883 26 + TSS region transcription start site region 31741
Tssr31742 3 131564887 to 131564910 23 + TSS region transcription start site region 31742
D3Mit82 3 131577852 to 131578010 158 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 82
Gm36917 3 131587586 to 131589459 1873 + lncRNA gene predicted gene, 36917
Gm42881 3 131610437 to 131613780 3343 - unclassified gene predicted gene 42881
Tssr35728 3 131613726 to 131613739 13 - TSS region transcription start site region 35728
Tssr35729 3 131613750 to 131613766 16 - TSS region transcription start site region 35729
Tssr35730 3 131613774 to 131613785 11 - TSS region transcription start site region 35730
Tssr31743 3 131637737 to 131637781 44 + TSS region transcription start site region 31743
Tssr31744 3 131638363 to 131638368 5 + TSS region transcription start site region 31744
Tssr31745 3 131638426 to 131638443 17 + TSS region transcription start site region 31745
Gm29865 3 131893134 to 131985102 91968 + lincRNA gene predicted gene, 29865
Olfr375-ps1 3 131899080 to 131899328 248 - pseudogene olfactory receptor 375, pseudogene 1
Mhdadsk8 3 131906318 to 143250921 11344603 heritable phenotypic marker Martin Hrabe de Angelis dark skin 8
D3Mit110 3 131906318 to 131906461 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 110
Mhdadsk6 3 131906318 to 143250921 11344603 heritable phenotypic marker Martin Hrabe de Angelis dark skin 6
Gm26103 3 131918259 to 131918353 94 + snRNA gene predicted gene, 26103
Gm29949 3 132007346 to 132058151 50805 + lncRNA gene predicted gene, 29949
Tssr31746 3 132007479 to 132007492 13 + TSS region transcription start site region 31746
Eae10 3 132030856 to 148745542 16714686 QTL experimental allergic encephalomyelitis susceptibility 10
D3Mit14 3 132030856 to 132031023 167 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 14
Bdt2 3 132030856 to 132031023 167 QTL bone density traits 2
D3Mit254 3 132048775 to 132048924 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 254
Ccs3 3 132048775 to 146311914 14263139 QTL colon cancer susceptibility 3
Gm22421 3 132082286 to 132082392 106 - snRNA gene predicted gene, 22421
Cpgi13841 3 132085227 to 132086195 968 CpG island CpG island 13841
Tssr31747 3 132085281 to 132085299 18 + TSS region transcription start site region 31747
Dkk2 3 132085292 to 132180304 95012 + protein coding gene dickkopf WNT signaling pathway inhibitor 2
Tssr31748 3 132085450 to 132085455 5 + TSS region transcription start site region 31748
Tssr31749 3 132085779 to 132085814 35 + TSS region transcription start site region 31749
Cpgi13842 3 132086966 to 132087566 600 CpG island CpG island 13842
D3Nds2 3 132104039 to 132104150 111 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 2
D3Nds3 3 132108774 to 132108933 159 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 3
Tssr31750 3 132120120 to 132120130 10 + TSS region transcription start site region 31750
Tssr31751 3 132154919 to 132154923 4 + TSS region transcription start site region 31751
D3Ertd162e 3 132353742 to 132353946 204 DNA segment DNA segment, Chr 3, ERATO Doi 162, expressed
Gm42880 3 132443673 to 132445548 1875 - lincRNA gene predicted gene 42880
Gm30147 3 132479597 to 132500426 20829 + lncRNA gene predicted gene, 30147
Gm25307 3 132537560 to 132537665 105 - snRNA gene predicted gene, 25307
Tssr1057 3 132592303 to 132592306 3 + TSS region transcription start site region 1057
Tssr31752 3 132629814 to 132629831 17 + TSS region transcription start site region 31752
Gimd1 3 132629820 to 132645351 15531 + protein coding gene GIMAP family P-loop NTPase domain containing 1
Tssr31753 3 132629833 to 132629888 55 + TSS region transcription start site region 31753
Tssr31754 3 132629922 to 132629935 13 + TSS region transcription start site region 31754
Tssr31755 3 132629944 to 132629963 19 + TSS region transcription start site region 31755
Gm9402 3 132655395 to 132655782 387 - pseudogene predicted gene 9402
Tssr35731 3 132655799 to 132655811 12 - TSS region transcription start site region 35731
Aimp1 3 132660498 to 132683879 23381 - protein coding gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 1
Cpgi13843 3 132683724 to 132684457 733 CpG island CpG island 13843
Tssr35732 3 132683824 to 132683856 32 - TSS region transcription start site region 35732
Tssr31756 3 132684106 to 132684145 39 + TSS region transcription start site region 31756
Tbck 3 132684144 to 132841688 157544 + protein coding gene TBC1 domain containing kinase
Tssr31757 3 132684159 to 132684191 32 + TSS region transcription start site region 31757
Tssr35733 3 132717501 to 132717504 3 - TSS region transcription start site region 35733
Tssr31758 3 132724421 to 132724432 11 + TSS region transcription start site region 31758
Tssr31759 3 132737419 to 132737426 7 + TSS region transcription start site region 31759
Tssr31760 3 132743645 to 132743648 3 + TSS region transcription start site region 31760
Tssr31761 3 132766571 to 132766574 3 + TSS region transcription start site region 31761
Gm42872 3 132767407 to 132769373 1966 + unclassified gene predicted gene 42872
Gm30294 3 132772128 to 132782870 10742 - lncRNA gene predicted gene, 30294
Gm22322 3 132787225 to 132787335 110 - snoRNA gene predicted gene, 22322
Tssr35734 3 132791229 to 132791235 6 - TSS region transcription start site region 35734
Gm42876 3 132806253 to 132809467 3214 + unclassified gene predicted gene 42876
Tssr31762 3 132814988 to 132814999 11 + TSS region transcription start site region 31762
Tssr31763 3 132818062 to 132818067 5 + TSS region transcription start site region 31763
Gm29811 3 132842202 to 132878596 36394 - lincRNA gene predicted gene, 29811
Gm9403 3 132842396 to 132844576 2180 + pseudogene predicted gene 9403
Tssr31764 3 132843096 to 132843129 33 + TSS region transcription start site region 31764
Tssr35735 3 132857450 to 132857457 7 - TSS region transcription start site region 35735
Tssr31765 3 132865847 to 132865897 50 + TSS region transcription start site region 31765
Npnt 3 132881745 to 132950291 68546 - protein coding gene nephronectin
Tssr35736 3 132883382 to 132883392 10 - TSS region transcription start site region 35736
Cpgi13844 3 132885715 to 132885960 245 CpG island CpG island 13844
Tssr31766 3 132904814 to 132904866 52 + TSS region transcription start site region 31766
Tssr35737 3 132904865 to 132904983 118 - TSS region transcription start site region 35737
Tssr35738 3 132906754 to 132906765 11 - TSS region transcription start site region 35738
Cpgi13845 3 132929288 to 132929514 226 CpG island CpG island 13845
Gm23196 3 132939870 to 132939976 106 + snRNA gene predicted gene, 23196
D3Mit15 3 132940762 to 132940908 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 15
Tssr35739 3 132948426 to 132948453 27 - TSS region transcription start site region 35739
Cpgi13846 3 132949282 to 132950876 1594 CpG island CpG island 13846
Tssr31767 3 132949416 to 132949417 1 + TSS region transcription start site region 31767
Tssr35740 3 132950167 to 132950181 14 - TSS region transcription start site region 35740
Tssr35741 3 132950189 to 132950198 9 - TSS region transcription start site region 35741
Tssr35742 3 132950223 to 132950226 3 - TSS region transcription start site region 35742
Tssr35743 3 132977207 to 132977211 4 - TSS region transcription start site region 35743
Gstcd 3 132982550 to 133091833 109283 - protein coding gene glutathione S-transferase, C-terminal domain containing
Gm19148 3 133029423 to 133029851 428 + pseudogene predicted gene, 19148
Gm42874 3 133050622 to 133052395 1773 - unclassified gene predicted gene 42874