Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:130813451-131143459

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr31674 3 130817845 to 130817859 14 + TSS region transcription start site region 31674
Tssr31675 3 130817878 to 130817889 11 + TSS region transcription start site region 31675
Tssr31676 3 130817910 to 130817923 13 + TSS region transcription start site region 31676
Cpgi13828 3 130818825 to 130819066 241 CpG island CpG island 13828
2010110G14Rik 3 130838455 to 130937337 98882 - lincRNA gene RIKEN cDNA 2010110G14 gene
Tssr35667 3 130842134 to 130842138 4 - TSS region transcription start site region 35667
Gm5982 3 130846462 to 130846973 511 - pseudogene predicted gene 5982
Gm36520 3 130867279 to 130868777 1498 + lincRNA gene predicted gene, 36520
Gm26090 3 130870949 to 130871076 127 - snoRNA gene predicted gene, 26090
Tssr31677 3 130874025 to 130874067 42 + TSS region transcription start site region 31677
Tssr31678 3 130874071 to 130874096 25 + TSS region transcription start site region 31678
Gm43351 3 130874073 to 130876824 2751 + lincRNA gene predicted gene 43351
Tssr31679 3 130874102 to 130874133 31 + TSS region transcription start site region 31679
Tssr31680 3 130874169 to 130874180 11 + TSS region transcription start site region 31680
Gm43350 3 130884851 to 130885561 710 + unclassified gene predicted gene 43350
Cpgi13829 3 130900137 to 130900668 531 CpG island CpG island 13829
Tssr35668 3 130901482 to 130901521 39 - TSS region transcription start site region 35668
5830437K03Rik 3 130901665 to 130903043 1378 + unclassified gene RIKEN cDNA 5830437K03 gene
Gm43349 3 130923483 to 130924837 1354 - lincRNA gene predicted gene 43349
Gm5855 3 130929366 to 130930670 1304 - pseudogene predicted gene 5855
Tssr35669 3 130930778 to 130930779 1 - TSS region transcription start site region 35669
Tssr31681 3 130936585 to 130936601 16 + TSS region transcription start site region 31681
Cpgi13830 3 130945909 to 130946373 464 CpG island CpG island 13830
Tssr35670 3 130947315 to 130947339 24 - TSS region transcription start site region 35670
Tssr35671 3 130978451 to 130978459 8 - TSS region transcription start site region 35671
Tssr35672 3 131019639 to 131019652 13 - TSS region transcription start site region 35672
Tssr35673 3 131019682 to 131019696 14 - TSS region transcription start site region 35673
A430072C10Rik 3 131023839 to 131026370 2531 - unclassified gene RIKEN cDNA A430072C10 gene
Gm36603 3 131101639 to 131108002 6363 - lncRNA gene predicted gene, 36603
Cpgi13831 3 131105966 to 131107785 1819 CpG island CpG island 13831
Tssr31682 3 131106180 to 131106191 11 + TSS region transcription start site region 31682
Gm43352 3 131109026 to 131112090 3064 - antisense lncRNA gene predicted gene 43352
Cpgi13832 3 131110218 to 131112659 2441 CpG island CpG island 13832
Tssr31683 3 131110282 to 131110334 52 + TSS region transcription start site region 31683
Tssr31684 3 131110336 to 131110345 9 + TSS region transcription start site region 31684
Tssr31685 3 131110350 to 131110357 7 + TSS region transcription start site region 31685
Tssr31686 3 131110405 to 131110412 7 + TSS region transcription start site region 31686
Lef1 3 131110471 to 131224356 113885 + protein coding gene lymphoid enhancer binding factor 1
Tssr31687 3 131110639 to 131110664 25 + TSS region transcription start site region 31687
Tssr31688 3 131110668 to 131110686 18 + TSS region transcription start site region 31688
Tssr31689 3 131110806 to 131110815 9 + TSS region transcription start site region 31689
Tssr31690 3 131110818 to 131110834 16 + TSS region transcription start site region 31690
Tssr31691 3 131110838 to 131110849 11 + TSS region transcription start site region 31691
Tssr31692 3 131110915 to 131110930 15 + TSS region transcription start site region 31692
Tssr31693 3 131111195 to 131111216 21 + TSS region transcription start site region 31693
Tssr31694 3 131111271 to 131111289 18 + TSS region transcription start site region 31694
Tssr31695 3 131111367 to 131111405 38 + TSS region transcription start site region 31695
Tssr31696 3 131111517 to 131111531 14 + TSS region transcription start site region 31696
Tssr31697 3 131111555 to 131111569 14 + TSS region transcription start site region 31697
Tssr35674 3 131111766 to 131111776 10 - TSS region transcription start site region 35674
Tssr1050 3 131111792 to 131111801 9 - TSS region transcription start site region 1050
Tssr35675 3 131111933 to 131111948 15 - TSS region transcription start site region 35675
Tssr35676 3 131112039 to 131112060 21 - TSS region transcription start site region 35676
Tssr35677 3 131112139 to 131112150 11 - TSS region transcription start site region 35677
Tssr31698 3 131112226 to 131112249 23 + TSS region transcription start site region 31698
Tssr31699 3 131112464 to 131112483 19 + TSS region transcription start site region 31699
Tssr31700 3 131112515 to 131112536 21 + TSS region transcription start site region 31700
Tssr31701 3 131112537 to 131112549 12 + TSS region transcription start site region 31701
Tssr31702 3 131112554 to 131112579 25 + TSS region transcription start site region 31702
Tssr35678 3 131112624 to 131112633 9 - TSS region transcription start site region 35678
Tssr31703 3 131112785 to 131112803 18 + TSS region transcription start site region 31703
Tssr31704 3 131113851 to 131113865 14 + TSS region transcription start site region 31704
Tssr31705 3 131113881 to 131113892 11 + TSS region transcription start site region 31705
Tssr31706 3 131123741 to 131123776 35 + TSS region transcription start site region 31706
Tssr1051 3 131127566 to 131127578 12 + TSS region transcription start site region 1051
D3Mit290 3 131127782 to 131127906 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 290
Tssr31707 3 131133263 to 131133267 4 + TSS region transcription start site region 31707
Tssr31708 3 131134453 to 131134459 6 + TSS region transcription start site region 31708
Tssr31709 3 131136146 to 131136150 4 + TSS region transcription start site region 31709
Gm42449 3 131136785 to 131139042 2257 + unclassified gene predicted gene 42449