Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:130433645-135053648

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384 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col25a1 3 130180336 to 130599884 419548 + protein coding gene collagen, type XXV, alpha 1
Gm43210 3 130539489 to 130545640 6151 + unclassified gene predicted gene 43210
Gm43211 3 130561942 to 130563840 1898 + unclassified gene predicted gene 43211
Cpgi13824 3 130575290 to 130575479 189 CpG island CpG island 13824
Gm42837 3 130592121 to 130594949 2828 + unclassified gene predicted gene 42837
Etnppl 3 130617448 to 130635750 18302 + protein coding gene ethanolamine phosphate phospholyase
Tssr31672 3 130617564 to 130617583 19 + TSS region transcription start site region 31672
Tssr31673 3 130617645 to 130617675 30 + TSS region transcription start site region 31673
Gm36322 3 130632009 to 130633392 1383 - lncRNA gene predicted gene, 36322
Gm36373 3 130645901 to 130695261 49360 - lncRNA gene predicted gene, 36373
Tssr1048 3 130647529 to 130647534 5 + TSS region transcription start site region 1048
Ostc 3 130695917 to 130709444 13527 - protein coding gene oligosaccharyltransferase complex subunit (non-catalytic)
Gm42998 3 130703579 to 130705949 2370 - unclassified gene predicted gene 42998
Cpgi13825 3 130709069 to 130709670 601 CpG island CpG island 13825
Tssr35661 3 130709392 to 130709417 25 - TSS region transcription start site region 35661
Tssr35662 3 130709419 to 130709451 32 - TSS region transcription start site region 35662
D3Ertd568e 3 130725567 to 130725796 229 DNA segment DNA segment, Chr 3, ERATO Doi 568, expressed
Rpl34 3 130726831 to 130730398 3567 - protein coding gene ribosomal protein L34
Cpgi13826 3 130729512 to 130730661 1149 CpG island CpG island 13826
Tssr35663 3 130730279 to 130730288 9 - TSS region transcription start site region 35663
Tssr1049 3 130730290 to 130730296 6 - TSS region transcription start site region 1049
Tssr35664 3 130730310 to 130730352 42 - TSS region transcription start site region 35664
Tssr35665 3 130730375 to 130730386 11 - TSS region transcription start site region 35665
Gm42997 3 130730460 to 130771643 41183 + lincRNA gene predicted gene 42997
Tssr35666 3 130730496 to 130730506 10 - TSS region transcription start site region 35666
Cpgi13827 3 130754746 to 130755047 301 CpG island CpG island 13827
Gm43524 3 130757461 to 130757758 297 + pseudogene predicted gene 43524
Gm43522 3 130759265 to 130762111 2846 + lincRNA gene predicted gene 43522
Gm36443 3 130792092 to 130804021 11929 - lncRNA gene predicted gene, 36443
Tssr31674 3 130817845 to 130817859 14 + TSS region transcription start site region 31674
Tssr31675 3 130817878 to 130817889 11 + TSS region transcription start site region 31675
Tssr31676 3 130817910 to 130817923 13 + TSS region transcription start site region 31676
Cpgi13828 3 130818825 to 130819066 241 CpG island CpG island 13828
2010110G14Rik 3 130838455 to 130937337 98882 - lincRNA gene RIKEN cDNA 2010110G14 gene
Tssr35667 3 130842134 to 130842138 4 - TSS region transcription start site region 35667
Gm5982 3 130846462 to 130846973 511 - pseudogene predicted gene 5982
Gm36520 3 130867279 to 130868777 1498 + lincRNA gene predicted gene, 36520
Gm26090 3 130870949 to 130871076 127 - snoRNA gene predicted gene, 26090
Tssr31677 3 130874025 to 130874067 42 + TSS region transcription start site region 31677
Tssr31678 3 130874071 to 130874096 25 + TSS region transcription start site region 31678
Gm43351 3 130874073 to 130876824 2751 + lincRNA gene predicted gene 43351
Tssr31679 3 130874102 to 130874133 31 + TSS region transcription start site region 31679
Tssr31680 3 130874169 to 130874180 11 + TSS region transcription start site region 31680
Gm43350 3 130884851 to 130885561 710 + unclassified gene predicted gene 43350
Cpgi13829 3 130900137 to 130900668 531 CpG island CpG island 13829
Tssr35668 3 130901482 to 130901521 39 - TSS region transcription start site region 35668
5830437K03Rik 3 130901665 to 130903043 1378 + unclassified gene RIKEN cDNA 5830437K03 gene
Gm43349 3 130923483 to 130924837 1354 - lincRNA gene predicted gene 43349
Gm5855 3 130929366 to 130930670 1304 - pseudogene predicted gene 5855
Tssr35669 3 130930778 to 130930779 1 - TSS region transcription start site region 35669
Tssr31681 3 130936585 to 130936601 16 + TSS region transcription start site region 31681
Cpgi13830 3 130945909 to 130946373 464 CpG island CpG island 13830
Tssr35670 3 130947315 to 130947339 24 - TSS region transcription start site region 35670
Tssr35671 3 130978451 to 130978459 8 - TSS region transcription start site region 35671
Tssr35672 3 131019639 to 131019652 13 - TSS region transcription start site region 35672
Tssr35673 3 131019682 to 131019696 14 - TSS region transcription start site region 35673
A430072C10Rik 3 131023839 to 131026370 2531 - unclassified gene RIKEN cDNA A430072C10 gene
Gm36603 3 131101639 to 131108002 6363 - lncRNA gene predicted gene, 36603
Cpgi13831 3 131105966 to 131107785 1819 CpG island CpG island 13831
Tssr31682 3 131106180 to 131106191 11 + TSS region transcription start site region 31682
Gm43352 3 131109026 to 131112090 3064 - antisense lncRNA gene predicted gene 43352
Cpgi13832 3 131110218 to 131112659 2441 CpG island CpG island 13832
Tssr31683 3 131110282 to 131110334 52 + TSS region transcription start site region 31683
Tssr31684 3 131110336 to 131110345 9 + TSS region transcription start site region 31684
Tssr31685 3 131110350 to 131110357 7 + TSS region transcription start site region 31685
Tssr31686 3 131110405 to 131110412 7 + TSS region transcription start site region 31686
Lef1 3 131110471 to 131224356 113885 + protein coding gene lymphoid enhancer binding factor 1
Tssr31687 3 131110639 to 131110664 25 + TSS region transcription start site region 31687
Tssr31688 3 131110668 to 131110686 18 + TSS region transcription start site region 31688
Tssr31689 3 131110806 to 131110815 9 + TSS region transcription start site region 31689
Tssr31690 3 131110818 to 131110834 16 + TSS region transcription start site region 31690
Tssr31691 3 131110838 to 131110849 11 + TSS region transcription start site region 31691
Tssr31692 3 131110915 to 131110930 15 + TSS region transcription start site region 31692
Tssr31693 3 131111195 to 131111216 21 + TSS region transcription start site region 31693
Tssr31694 3 131111271 to 131111289 18 + TSS region transcription start site region 31694
Tssr31695 3 131111367 to 131111405 38 + TSS region transcription start site region 31695
Tssr31696 3 131111517 to 131111531 14 + TSS region transcription start site region 31696
Tssr31697 3 131111555 to 131111569 14 + TSS region transcription start site region 31697
Tssr35674 3 131111766 to 131111776 10 - TSS region transcription start site region 35674
Tssr1050 3 131111792 to 131111801 9 - TSS region transcription start site region 1050
Tssr35675 3 131111933 to 131111948 15 - TSS region transcription start site region 35675
Tssr35676 3 131112039 to 131112060 21 - TSS region transcription start site region 35676
Tssr35677 3 131112139 to 131112150 11 - TSS region transcription start site region 35677
Tssr31698 3 131112226 to 131112249 23 + TSS region transcription start site region 31698
Tssr31699 3 131112464 to 131112483 19 + TSS region transcription start site region 31699
Tssr31700 3 131112515 to 131112536 21 + TSS region transcription start site region 31700
Tssr31701 3 131112537 to 131112549 12 + TSS region transcription start site region 31701
Tssr31702 3 131112554 to 131112579 25 + TSS region transcription start site region 31702
Tssr35678 3 131112624 to 131112633 9 - TSS region transcription start site region 35678
Tssr31703 3 131112785 to 131112803 18 + TSS region transcription start site region 31703
Tssr31704 3 131113851 to 131113865 14 + TSS region transcription start site region 31704
Tssr31705 3 131113881 to 131113892 11 + TSS region transcription start site region 31705
Tssr31706 3 131123741 to 131123776 35 + TSS region transcription start site region 31706
Tssr1051 3 131127566 to 131127578 12 + TSS region transcription start site region 1051
D3Mit290 3 131127782 to 131127906 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 290
Tssr31707 3 131133263 to 131133267 4 + TSS region transcription start site region 31707
Tssr31708 3 131134453 to 131134459 6 + TSS region transcription start site region 31708
Tssr31709 3 131136146 to 131136150 4 + TSS region transcription start site region 31709
Gm42449 3 131136785 to 131139042 2257 + unclassified gene predicted gene 42449
Tssr31710 3 131156286 to 131156300 14 + TSS region transcription start site region 31710
Tssr31711 3 131156307 to 131156344 37 + TSS region transcription start site region 31711
Tssr31712 3 131156355 to 131156366 11 + TSS region transcription start site region 31712
Tssr31713 3 131156449 to 131156457 8 + TSS region transcription start site region 31713
Tssr31714 3 131156458 to 131156470 12 + TSS region transcription start site region 31714
Tssr31715 3 131159715 to 131159730 15 + TSS region transcription start site region 31715
Tssr31716 3 131170420 to 131170436 16 + TSS region transcription start site region 31716
Tssr35679 3 131171439 to 131171442 3 - TSS region transcription start site region 35679
Tssr31717 3 131171702 to 131171726 24 + TSS region transcription start site region 31717
Tssr31718 3 131184654 to 131184701 47 + TSS region transcription start site region 31718
Tssr31719 3 131189271 to 131189276 5 + TSS region transcription start site region 31719
Tssr31720 3 131189791 to 131189795 4 + TSS region transcription start site region 31720
6720418B01Rik 3 131191842 to 131192965 1123 unclassified gene RIKEN cDNA 6720418B01 gene
Tssr31721 3 131200106 to 131200145 39 + TSS region transcription start site region 31721
Tssr31722 3 131206520 to 131206524 4 + TSS region transcription start site region 31722
Tssr31723 3 131222791 to 131222793 2 + TSS region transcription start site region 31723
Tssr31724 3 131223828 to 131223837 9 + TSS region transcription start site region 31724
Tssr31725 3 131223938 to 131223951 13 + TSS region transcription start site region 31725
Hadh 3 131233419 to 131272101 38682 - protein coding gene hydroxyacyl-Coenzyme A dehydrogenase
Tssr35680 3 131233906 to 131233920 14 - TSS region transcription start site region 35680
Tssr35681 3 131234027 to 131234034 7 - TSS region transcription start site region 35681
Tssr35682 3 131234078 to 131234087 9 - TSS region transcription start site region 35682
Tssr35683 3 131234157 to 131234182 25 - TSS region transcription start site region 35683
Cpgi13833 3 131271588 to 131272333 745 CpG island CpG island 13833
Tssr35684 3 131272009 to 131272073 64 - TSS region transcription start site region 35684
Tssr35685 3 131272077 to 131272078 1 - TSS region transcription start site region 35685
Tssr35686 3 131272805 to 131272855 50 - TSS region transcription start site region 35686
Cpgi13834 3 131278040 to 131278215 175 CpG island CpG island 13834
Gm18492 3 131284166 to 131284803 637 - pseudogene predicted gene, 18492
Cyp2u1 3 131290491 to 131303227 12736 - protein coding gene cytochrome P450, family 2, subfamily u, polypeptide 1
Cpgi13835 3 131302538 to 131303466 928 CpG island CpG island 13835
4930534D22Rik 3 131302643 to 131316661 14018 + antisense lncRNA gene RIKEN cDNA 4930534D22 gene
Tssr35687 3 131303144 to 131303223 79 - TSS region transcription start site region 35687
Sgms2 3 131318985 to 131491271 172286 - protein coding gene sphingomyelin synthase 2
Tssr35688 3 131321381 to 131321384 3 - TSS region transcription start site region 35688
Tssr35689 3 131322468 to 131322472 4 - TSS region transcription start site region 35689
Cpgi13836 3 131329974 to 131330427 453 CpG island CpG island 13836
Tssr35690 3 131343489 to 131343508 19 - TSS region transcription start site region 35690
Tssr35691 3 131344892 to 131344926 34 - TSS region transcription start site region 35691
Tssr1052 3 131357770 to 131357776 6 - TSS region transcription start site region 1052
Gm43116 3 131360556 to 131360750 194 + pseudogene predicted gene 43116
Cpgi13837 3 131363702 to 131363925 223 CpG island CpG island 13837
Tssr35692 3 131364734 to 131364740 6 - TSS region transcription start site region 35692
Cpgi13838 3 131364844 to 131365091 247 CpG island CpG island 13838
Tssr1053 3 131368726 to 131368734 8 - TSS region transcription start site region 1053
Tssr31726 3 131368970 to 131368979 9 + TSS region transcription start site region 31726
Tssr31727 3 131368989 to 131369000 11 + TSS region transcription start site region 31727
Tssr31728 3 131369001 to 131369016 15 + TSS region transcription start site region 31728
Tssr35693 3 131466255 to 131466260 5 - TSS region transcription start site region 35693
Tssr31729 3 131466538 to 131466544 6 + TSS region transcription start site region 31729
Tssr31730 3 131466663 to 131466680 17 + TSS region transcription start site region 31730
Tssr31731 3 131466703 to 131466710 7 + TSS region transcription start site region 31731
Tssr35694 3 131470862 to 131470866 4 - TSS region transcription start site region 35694
Tssr35695 3 131470946 to 131470951 5 - TSS region transcription start site region 35695
Tssr35696 3 131470958 to 131470959 1 - TSS region transcription start site region 35696
Tssr35697 3 131470964 to 131470974 10 - TSS region transcription start site region 35697
Tssr35698 3 131470977 to 131470988 11 - TSS region transcription start site region 35698
Tssr35699 3 131471004 to 131471015 11 - TSS region transcription start site region 35699
Tssr31732 3 131471205 to 131471222 17 + TSS region transcription start site region 31732
Tssr35700 3 131472970 to 131473003 33 - TSS region transcription start site region 35700
Tssr31733 3 131473067 to 131473071 4 + TSS region transcription start site region 31733
Tssr35701 3 131474422 to 131474425 3 - TSS region transcription start site region 35701
Tssr35702 3 131474507 to 131474514 7 - TSS region transcription start site region 35702
Tssr35703 3 131474559 to 131474570 11 - TSS region transcription start site region 35703
Tssr35704 3 131474579 to 131474596 17 - TSS region transcription start site region 35704
Tssr1054 3 131474616 to 131474617 1 - TSS region transcription start site region 1054
Tssr35705 3 131474618 to 131474630 12 - TSS region transcription start site region 35705
Tssr35706 3 131474770 to 131474792 22 - TSS region transcription start site region 35706
Tssr31734 3 131476241 to 131476243 2 + TSS region transcription start site region 31734
Tssr35707 3 131489001 to 131489021 20 - TSS region transcription start site region 35707
Tssr35708 3 131489035 to 131489050 15 - TSS region transcription start site region 35708
Cpgi13839 3 131489612 to 131490938 1326 CpG island CpG island 13839
Tssr1055 3 131489712 to 131489729 17 + TSS region transcription start site region 1055
Tssr31735 3 131489737 to 131489753 16 + TSS region transcription start site region 31735
Tssr35709 3 131489747 to 131489757 10 - TSS region transcription start site region 35709
Tssr35710 3 131489763 to 131489774 11 - TSS region transcription start site region 35710
Tssr35711 3 131489911 to 131489936 25 - TSS region transcription start site region 35711
Tssr35712 3 131489937 to 131489966 29 - TSS region transcription start site region 35712
Tssr1056 3 131490005 to 131490031 26 + TSS region transcription start site region 1056
Tssr35713 3 131490178 to 131490235 57 - TSS region transcription start site region 35713
Tssr31736 3 131490351 to 131490405 54 + TSS region transcription start site region 31736
Tssr35714 3 131490452 to 131490495 43 - TSS region transcription start site region 35714
Tssr35715 3 131490510 to 131490531 21 - TSS region transcription start site region 35715
Gm36753 3 131490585 to 131499178 8593 + lncRNA gene predicted gene, 36753
Tssr35716 3 131490653 to 131490666 13 - TSS region transcription start site region 35716
Tssr35717 3 131490729 to 131490742 13 - TSS region transcription start site region 35717
Tssr35718 3 131490747 to 131490768 21 - TSS region transcription start site region 35718
Tssr35719 3 131490990 to 131491011 21 - TSS region transcription start site region 35719
Tssr35720 3 131491053 to 131491057 4 - TSS region transcription start site region 35720
Tssr35721 3 131491275 to 131491288 13 - TSS region transcription start site region 35721
Tssr35722 3 131491327 to 131491336 9 - TSS region transcription start site region 35722
Tssr35723 3 131491386 to 131491398 12 - TSS region transcription start site region 35723
Tssr35724 3 131491399 to 131491409 10 - TSS region transcription start site region 35724
Tssr35725 3 131491437 to 131491448 11 - TSS region transcription start site region 35725
Tssr31737 3 131491559 to 131491568 9 + TSS region transcription start site region 31737
Tssr31738 3 131496904 to 131496910 6 + TSS region transcription start site region 31738
Tssr35726 3 131504902 to 131504909 7 - TSS region transcription start site region 35726
Tssr35727 3 131504944 to 131504954 10 - TSS region transcription start site region 35727
Gm36863 3 131509133 to 131511149 2016 + lncRNA gene predicted gene, 36863
Cpgi13840 3 131564418 to 131565416 998 CpG island CpG island 13840
Papss1 3 131564768 to 131643671 78903 + protein coding gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1