Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:130344512-131115661

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col25a1 3 130180336 to 130599884 419548 + protein coding gene collagen, type XXV, alpha 1
Tcq12 3 130370000 to 16450000 -113920000 QTL total cholesterol QTL 12
Tssr1047 3 130420628 to 130420629 1 + TSS region transcription start site region 1047
Gm43210 3 130539489 to 130545640 6151 + unclassified gene predicted gene 43210
Gm43211 3 130561942 to 130563840 1898 + unclassified gene predicted gene 43211
Cpgi13824 3 130575290 to 130575479 189 CpG island CpG island 13824
Gm42837 3 130592121 to 130594949 2828 + unclassified gene predicted gene 42837
Etnppl 3 130617448 to 130635750 18302 + protein coding gene ethanolamine phosphate phospholyase
Tssr31672 3 130617564 to 130617583 19 + TSS region transcription start site region 31672
Tssr31673 3 130617645 to 130617675 30 + TSS region transcription start site region 31673
Gm36322 3 130632009 to 130633392 1383 - lncRNA gene predicted gene, 36322
Gm36373 3 130645901 to 130695261 49360 - lncRNA gene predicted gene, 36373
Tssr1048 3 130647529 to 130647534 5 + TSS region transcription start site region 1048
Ostc 3 130695917 to 130709444 13527 - protein coding gene oligosaccharyltransferase complex subunit (non-catalytic)
Gm42998 3 130703579 to 130705949 2370 - unclassified gene predicted gene 42998
Cpgi13825 3 130709069 to 130709670 601 CpG island CpG island 13825
Tssr35661 3 130709392 to 130709417 25 - TSS region transcription start site region 35661
Tssr35662 3 130709419 to 130709451 32 - TSS region transcription start site region 35662
D3Ertd568e 3 130725567 to 130725796 229 DNA segment DNA segment, Chr 3, ERATO Doi 568, expressed
Rpl34 3 130726831 to 130730398 3567 - protein coding gene ribosomal protein L34
Cpgi13826 3 130729512 to 130730661 1149 CpG island CpG island 13826
Tssr35663 3 130730279 to 130730288 9 - TSS region transcription start site region 35663
Tssr1049 3 130730290 to 130730296 6 - TSS region transcription start site region 1049
Tssr35664 3 130730310 to 130730352 42 - TSS region transcription start site region 35664
Tssr35665 3 130730375 to 130730386 11 - TSS region transcription start site region 35665
Gm42997 3 130730460 to 130771643 41183 + lincRNA gene predicted gene 42997
Tssr35666 3 130730496 to 130730506 10 - TSS region transcription start site region 35666
Cpgi13827 3 130754746 to 130755047 301 CpG island CpG island 13827
Gm43524 3 130757461 to 130757758 297 + pseudogene predicted gene 43524
Gm43522 3 130759265 to 130762111 2846 + lincRNA gene predicted gene 43522
Gm36443 3 130792092 to 130804021 11929 - lncRNA gene predicted gene, 36443
Tssr31674 3 130817845 to 130817859 14 + TSS region transcription start site region 31674
Tssr31675 3 130817878 to 130817889 11 + TSS region transcription start site region 31675
Tssr31676 3 130817910 to 130817923 13 + TSS region transcription start site region 31676
Cpgi13828 3 130818825 to 130819066 241 CpG island CpG island 13828
2010110G14Rik 3 130838455 to 130937337 98882 - lincRNA gene RIKEN cDNA 2010110G14 gene
Tssr35667 3 130842134 to 130842138 4 - TSS region transcription start site region 35667
Gm5982 3 130846462 to 130846973 511 - pseudogene predicted gene 5982
Gm36520 3 130867279 to 130868777 1498 + lincRNA gene predicted gene, 36520
Gm26090 3 130870949 to 130871076 127 - snoRNA gene predicted gene, 26090
Tssr31677 3 130874025 to 130874067 42 + TSS region transcription start site region 31677
Tssr31678 3 130874071 to 130874096 25 + TSS region transcription start site region 31678
Gm43351 3 130874073 to 130876824 2751 + lincRNA gene predicted gene 43351
Tssr31679 3 130874102 to 130874133 31 + TSS region transcription start site region 31679
Tssr31680 3 130874169 to 130874180 11 + TSS region transcription start site region 31680
Gm43350 3 130884851 to 130885561 710 + unclassified gene predicted gene 43350
Cpgi13829 3 130900137 to 130900668 531 CpG island CpG island 13829
Tssr35668 3 130901482 to 130901521 39 - TSS region transcription start site region 35668
5830437K03Rik 3 130901665 to 130903043 1378 + unclassified gene RIKEN cDNA 5830437K03 gene
Gm43349 3 130923483 to 130924837 1354 - lincRNA gene predicted gene 43349
Gm5855 3 130929366 to 130930670 1304 - pseudogene predicted gene 5855
Tssr35669 3 130930778 to 130930779 1 - TSS region transcription start site region 35669
Tssr31681 3 130936585 to 130936601 16 + TSS region transcription start site region 31681
Cpgi13830 3 130945909 to 130946373 464 CpG island CpG island 13830
Tssr35670 3 130947315 to 130947339 24 - TSS region transcription start site region 35670
Tssr35671 3 130978451 to 130978459 8 - TSS region transcription start site region 35671
Tssr35672 3 131019639 to 131019652 13 - TSS region transcription start site region 35672
Tssr35673 3 131019682 to 131019696 14 - TSS region transcription start site region 35673
A430072C10Rik 3 131023839 to 131026370 2531 - unclassified gene RIKEN cDNA A430072C10 gene
Gm36603 3 131101639 to 131108002 6363 - lncRNA gene predicted gene, 36603
Cpgi13831 3 131105966 to 131107785 1819 CpG island CpG island 13831
Tssr31682 3 131106180 to 131106191 11 + TSS region transcription start site region 31682
Gm43352 3 131109026 to 131112090 3064 - antisense lncRNA gene predicted gene 43352
Cpgi13832 3 131110218 to 131112659 2441 CpG island CpG island 13832
Tssr31683 3 131110282 to 131110334 52 + TSS region transcription start site region 31683
Tssr31684 3 131110336 to 131110345 9 + TSS region transcription start site region 31684
Tssr31685 3 131110350 to 131110357 7 + TSS region transcription start site region 31685
Tssr31686 3 131110405 to 131110412 7 + TSS region transcription start site region 31686
Lef1 3 131110471 to 131224356 113885 + protein coding gene lymphoid enhancer binding factor 1
Tssr31687 3 131110639 to 131110664 25 + TSS region transcription start site region 31687
Tssr31688 3 131110668 to 131110686 18 + TSS region transcription start site region 31688
Tssr31689 3 131110806 to 131110815 9 + TSS region transcription start site region 31689
Tssr31690 3 131110818 to 131110834 16 + TSS region transcription start site region 31690
Tssr31691 3 131110838 to 131110849 11 + TSS region transcription start site region 31691
Tssr31692 3 131110915 to 131110930 15 + TSS region transcription start site region 31692
Tssr31693 3 131111195 to 131111216 21 + TSS region transcription start site region 31693
Tssr31694 3 131111271 to 131111289 18 + TSS region transcription start site region 31694
Tssr31695 3 131111367 to 131111405 38 + TSS region transcription start site region 31695
Tssr31696 3 131111517 to 131111531 14 + TSS region transcription start site region 31696
Tssr31697 3 131111555 to 131111569 14 + TSS region transcription start site region 31697
Tssr35674 3 131111766 to 131111776 10 - TSS region transcription start site region 35674
Tssr1050 3 131111792 to 131111801 9 - TSS region transcription start site region 1050
Tssr35675 3 131111933 to 131111948 15 - TSS region transcription start site region 35675
Tssr35676 3 131112039 to 131112060 21 - TSS region transcription start site region 35676
Tssr35677 3 131112139 to 131112150 11 - TSS region transcription start site region 35677
Tssr31698 3 131112226 to 131112249 23 + TSS region transcription start site region 31698
Tssr31699 3 131112464 to 131112483 19 + TSS region transcription start site region 31699
Tssr31700 3 131112515 to 131112536 21 + TSS region transcription start site region 31700
Tssr31701 3 131112537 to 131112549 12 + TSS region transcription start site region 31701
Tssr31702 3 131112554 to 131112579 25 + TSS region transcription start site region 31702
Tssr35678 3 131112624 to 131112633 9 - TSS region transcription start site region 35678
Tssr31703 3 131112785 to 131112803 18 + TSS region transcription start site region 31703
Tssr31704 3 131113851 to 131113865 14 + TSS region transcription start site region 31704
Tssr31705 3 131113881 to 131113892 11 + TSS region transcription start site region 31705