Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:129819489-131265640

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rrh 3 129808575 to 129822505 13930 - protein coding gene retinal pigment epithelium derived rhodopsin homolog
Tssr35631 3 129822425 to 129822432 7 - TSS region transcription start site region 35631
Tssr35632 3 129822471 to 129822482 11 - TSS region transcription start site region 35632
Tssr35633 3 129822487 to 129822510 23 - TSS region transcription start site region 35633
Tssr35634 3 129822517 to 129822530 13 - TSS region transcription start site region 35634
Tssr35635 3 129822534 to 129822545 11 - TSS region transcription start site region 35635
Gar1 3 129824912 to 129831396 6484 - protein coding gene GAR1 ribonucleoprotein
Cpgi13816 3 129830427 to 129831790 1363 CpG island CpG island 13816
Tssr35636 3 129831123 to 129831186 63 - TSS region transcription start site region 35636
Tssr35637 3 129831289 to 129831341 52 - TSS region transcription start site region 35637
Tssr35638 3 129831374 to 129831406 32 - TSS region transcription start site region 35638
Tssr31654 3 129836633 to 129836672 39 + TSS region transcription start site region 31654
Cfi 3 129836727 to 129875328 38601 + protein coding gene complement component factor i
Tssr31655 3 129836729 to 129836747 18 + TSS region transcription start site region 31655
Tssr31656 3 129836774 to 129836804 30 + TSS region transcription start site region 31656
Gm36180 3 129844236 to 129847227 2991 - lncRNA gene predicted gene, 36180
Tssr35639 3 129847014 to 129847063 49 - TSS region transcription start site region 35639
Tssr31657 3 129852889 to 129852893 4 + TSS region transcription start site region 31657
Cpgi13817 3 129878123 to 129879463 1340 CpG island CpG island 13817
Tssr31658 3 129878571 to 129878704 133 + TSS region transcription start site region 31658
Pla2g12a 3 129878606 to 129895825 17219 + protein coding gene phospholipase A2, group XIIA
Tssr31659 3 129878789 to 129878812 23 + TSS region transcription start site region 31659
Tssr31660 3 129881149 to 129881188 39 + TSS region transcription start site region 31660
D3Mit1006 3 129889794 to 129889913 119 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1006
D3Mit1004 3 129889876 to 129890000 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1004
D3Mit1005 3 129889983 to 129890124 141 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1005
Gm46825 3 129895906 to 129901392 5486 - lncRNA gene predicted gene, 46825
Cpgi13818 3 129901116 to 129901808 692 CpG island CpG island 13818
Tssr35640 3 129901344 to 129901362 18 - TSS region transcription start site region 35640
Tssr31661 3 129901419 to 129901430 11 + TSS region transcription start site region 31661
Casp6 3 129901425 to 129914103 12678 + protein coding gene caspase 6
Tssr31662 3 129901431 to 129901466 35 + TSS region transcription start site region 31662
Tssr31663 3 129901468 to 129901490 22 + TSS region transcription start site region 31663
Tssr35641 3 129901478 to 129901489 11 - TSS region transcription start site region 35641
Gm40150 3 129906485 to 129910348 3863 + lncRNA gene predicted gene, 40150
Mcub 3 129914960 to 129970206 55246 - protein coding gene mitochondrial calcium uniporter dominant negative beta subunit
Tssr31664 3 129935105 to 129935121 16 + TSS region transcription start site region 31664
Cpgi13819 3 129935884 to 129936134 250 CpG island CpG island 13819
Tssr35642 3 129946309 to 129946314 5 - TSS region transcription start site region 35642
Gm40151 3 129946518 to 129947189 671 - lncRNA gene predicted gene, 40151
Cpgi13820 3 129969393 to 129970369 976 CpG island CpG island 13820
Tssr35643 3 129970057 to 129970130 73 - TSS region transcription start site region 35643
Tssr35644 3 129970135 to 129970150 15 - TSS region transcription start site region 35644
Tssr35645 3 129970152 to 129970167 15 - TSS region transcription start site region 35645
Sec24b 3 129982759 to 130061553 78794 - protein coding gene Sec24 related gene family, member B (S. cerevisiae)
Tssr35646 3 129995640 to 129995653 13 - TSS region transcription start site region 35646
Tssr35647 3 130007547 to 130007560 13 - TSS region transcription start site region 35647
Tssr35648 3 130041031 to 130041063 32 - TSS region transcription start site region 35648
Tssr35649 3 130041189 to 130041206 17 - TSS region transcription start site region 35649
Tssr35650 3 130041346 to 130041358 12 - TSS region transcription start site region 35650
Tssr35651 3 130041366 to 130041379 13 - TSS region transcription start site region 35651
Tssr35652 3 130052225 to 130052239 14 - TSS region transcription start site region 35652
Cpgi13821 3 130059904 to 130061385 1481 CpG island CpG island 13821
Tssr35653 3 130060673 to 130060733 60 - TSS region transcription start site region 35653
Tssr35654 3 130060735 to 130060758 23 - TSS region transcription start site region 35654
Tssr31665 3 130060767 to 130060791 24 + TSS region transcription start site region 31665
Tssr35655 3 130060810 to 130060826 16 - TSS region transcription start site region 35655
Tssr35656 3 130060838 to 130060849 11 - TSS region transcription start site region 35656
Tssr35657 3 130060850 to 130060865 15 - TSS region transcription start site region 35657
Tssr35658 3 130061019 to 130061030 11 - TSS region transcription start site region 35658
Tssr35659 3 130061485 to 130061508 23 - TSS region transcription start site region 35659
Tssr35660 3 130061567 to 130061585 18 - TSS region transcription start site region 35660
Tssr31666 3 130068390 to 130068391 1 + TSS region transcription start site region 31666
Gm9396 3 130068412 to 130068978 566 + pseudogene predicted gene 9396
Gm42663 3 130080779 to 130081129 350 + pseudogene predicted gene 42663
Gm9397 3 130140380 to 130142042 1662 + pseudogene predicted gene 9397
Cpgi13822 3 130172792 to 130173002 210 CpG island CpG island 13822
Col25a1 3 130180336 to 130599884 419548 + protein coding gene collagen, type XXV, alpha 1
Cpgi13823 3 130180696 to 130181710 1014 CpG island CpG island 13823
Tssr31667 3 130180835 to 130180854 19 + TSS region transcription start site region 31667
Tssr31668 3 130180882 to 130180899 17 + TSS region transcription start site region 31668
Tssr31669 3 130185221 to 130185225 4 + TSS region transcription start site region 31669
Tssr31670 3 130201345 to 130201350 5 + TSS region transcription start site region 31670
Gm22682 3 130205465 to 130205571 106 + snRNA gene predicted gene, 22682
Tssr31671 3 130247036 to 130247039 3 + TSS region transcription start site region 31671
D3Mit357 3 130312624 to 130312718 94 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 357
Tcq12 3 130370000 to 16450000 -113920000 QTL total cholesterol QTL 12
Tssr1047 3 130420628 to 130420629 1 + TSS region transcription start site region 1047
Gm43210 3 130539489 to 130545640 6151 + unclassified gene predicted gene 43210
Gm43211 3 130561942 to 130563840 1898 + unclassified gene predicted gene 43211
Cpgi13824 3 130575290 to 130575479 189 CpG island CpG island 13824
Gm42837 3 130592121 to 130594949 2828 + unclassified gene predicted gene 42837
Etnppl 3 130617448 to 130635750 18302 + protein coding gene ethanolamine phosphate phospholyase
Tssr31672 3 130617564 to 130617583 19 + TSS region transcription start site region 31672
Tssr31673 3 130617645 to 130617675 30 + TSS region transcription start site region 31673
Gm36322 3 130632009 to 130633392 1383 - lncRNA gene predicted gene, 36322
Gm36373 3 130645901 to 130695261 49360 - lncRNA gene predicted gene, 36373
Tssr1048 3 130647529 to 130647534 5 + TSS region transcription start site region 1048
Ostc 3 130695917 to 130709444 13527 - protein coding gene oligosaccharyltransferase complex subunit (non-catalytic)
Gm42998 3 130703579 to 130705949 2370 - unclassified gene predicted gene 42998
Cpgi13825 3 130709069 to 130709670 601 CpG island CpG island 13825
Tssr35661 3 130709392 to 130709417 25 - TSS region transcription start site region 35661
Tssr35662 3 130709419 to 130709451 32 - TSS region transcription start site region 35662
D3Ertd568e 3 130725567 to 130725796 229 DNA segment DNA segment, Chr 3, ERATO Doi 568, expressed
Rpl34 3 130726831 to 130730398 3567 - protein coding gene ribosomal protein L34
Cpgi13826 3 130729512 to 130730661 1149 CpG island CpG island 13826
Tssr35663 3 130730279 to 130730288 9 - TSS region transcription start site region 35663
Tssr1049 3 130730290 to 130730296 6 - TSS region transcription start site region 1049
Tssr35664 3 130730310 to 130730352 42 - TSS region transcription start site region 35664
Tssr35665 3 130730375 to 130730386 11 - TSS region transcription start site region 35665
Gm42997 3 130730460 to 130771643 41183 + lincRNA gene predicted gene 42997
Tssr35666 3 130730496 to 130730506 10 - TSS region transcription start site region 35666
Cpgi13827 3 130754746 to 130755047 301 CpG island CpG island 13827
Gm43524 3 130757461 to 130757758 297 + pseudogene predicted gene 43524
Gm43522 3 130759265 to 130762111 2846 + lincRNA gene predicted gene 43522
Gm36443 3 130792092 to 130804021 11929 - lncRNA gene predicted gene, 36443
Tssr31674 3 130817845 to 130817859 14 + TSS region transcription start site region 31674
Tssr31675 3 130817878 to 130817889 11 + TSS region transcription start site region 31675
Tssr31676 3 130817910 to 130817923 13 + TSS region transcription start site region 31676
Cpgi13828 3 130818825 to 130819066 241 CpG island CpG island 13828
2010110G14Rik 3 130838455 to 130937337 98882 - lincRNA gene RIKEN cDNA 2010110G14 gene
Tssr35667 3 130842134 to 130842138 4 - TSS region transcription start site region 35667
Gm5982 3 130846462 to 130846973 511 - pseudogene predicted gene 5982
Gm36520 3 130867279 to 130868777 1498 + lincRNA gene predicted gene, 36520
Gm26090 3 130870949 to 130871076 127 - snoRNA gene predicted gene, 26090
Tssr31677 3 130874025 to 130874067 42 + TSS region transcription start site region 31677
Tssr31678 3 130874071 to 130874096 25 + TSS region transcription start site region 31678
Gm43351 3 130874073 to 130876824 2751 + lincRNA gene predicted gene 43351
Tssr31679 3 130874102 to 130874133 31 + TSS region transcription start site region 31679
Tssr31680 3 130874169 to 130874180 11 + TSS region transcription start site region 31680
Gm43350 3 130884851 to 130885561 710 + unclassified gene predicted gene 43350
Cpgi13829 3 130900137 to 130900668 531 CpG island CpG island 13829
Tssr35668 3 130901482 to 130901521 39 - TSS region transcription start site region 35668
5830437K03Rik 3 130901665 to 130903043 1378 + unclassified gene RIKEN cDNA 5830437K03 gene
Gm43349 3 130923483 to 130924837 1354 - lincRNA gene predicted gene 43349
Gm5855 3 130929366 to 130930670 1304 - pseudogene predicted gene 5855
Tssr35669 3 130930778 to 130930779 1 - TSS region transcription start site region 35669
Tssr31681 3 130936585 to 130936601 16 + TSS region transcription start site region 31681
Cpgi13830 3 130945909 to 130946373 464 CpG island CpG island 13830
Tssr35670 3 130947315 to 130947339 24 - TSS region transcription start site region 35670
Tssr35671 3 130978451 to 130978459 8 - TSS region transcription start site region 35671
Tssr35672 3 131019639 to 131019652 13 - TSS region transcription start site region 35672
Tssr35673 3 131019682 to 131019696 14 - TSS region transcription start site region 35673
A430072C10Rik 3 131023839 to 131026370 2531 - unclassified gene RIKEN cDNA A430072C10 gene
Gm36603 3 131101639 to 131108002 6363 - lncRNA gene predicted gene, 36603
Cpgi13831 3 131105966 to 131107785 1819 CpG island CpG island 13831
Tssr31682 3 131106180 to 131106191 11 + TSS region transcription start site region 31682
Gm43352 3 131109026 to 131112090 3064 - antisense lncRNA gene predicted gene 43352
Cpgi13832 3 131110218 to 131112659 2441 CpG island CpG island 13832
Tssr31683 3 131110282 to 131110334 52 + TSS region transcription start site region 31683
Tssr31684 3 131110336 to 131110345 9 + TSS region transcription start site region 31684
Tssr31685 3 131110350 to 131110357 7 + TSS region transcription start site region 31685
Tssr31686 3 131110405 to 131110412 7 + TSS region transcription start site region 31686
Lef1 3 131110471 to 131224356 113885 + protein coding gene lymphoid enhancer binding factor 1
Tssr31687 3 131110639 to 131110664 25 + TSS region transcription start site region 31687
Tssr31688 3 131110668 to 131110686 18 + TSS region transcription start site region 31688
Tssr31689 3 131110806 to 131110815 9 + TSS region transcription start site region 31689
Tssr31690 3 131110818 to 131110834 16 + TSS region transcription start site region 31690
Tssr31691 3 131110838 to 131110849 11 + TSS region transcription start site region 31691
Tssr31692 3 131110915 to 131110930 15 + TSS region transcription start site region 31692
Tssr31693 3 131111195 to 131111216 21 + TSS region transcription start site region 31693
Tssr31694 3 131111271 to 131111289 18 + TSS region transcription start site region 31694
Tssr31695 3 131111367 to 131111405 38 + TSS region transcription start site region 31695
Tssr31696 3 131111517 to 131111531 14 + TSS region transcription start site region 31696
Tssr31697 3 131111555 to 131111569 14 + TSS region transcription start site region 31697
Tssr35674 3 131111766 to 131111776 10 - TSS region transcription start site region 35674
Tssr1050 3 131111792 to 131111801 9 - TSS region transcription start site region 1050
Tssr35675 3 131111933 to 131111948 15 - TSS region transcription start site region 35675
Tssr35676 3 131112039 to 131112060 21 - TSS region transcription start site region 35676
Tssr35677 3 131112139 to 131112150 11 - TSS region transcription start site region 35677
Tssr31698 3 131112226 to 131112249 23 + TSS region transcription start site region 31698
Tssr31699 3 131112464 to 131112483 19 + TSS region transcription start site region 31699
Tssr31700 3 131112515 to 131112536 21 + TSS region transcription start site region 31700
Tssr31701 3 131112537 to 131112549 12 + TSS region transcription start site region 31701
Tssr31702 3 131112554 to 131112579 25 + TSS region transcription start site region 31702
Tssr35678 3 131112624 to 131112633 9 - TSS region transcription start site region 35678
Tssr31703 3 131112785 to 131112803 18 + TSS region transcription start site region 31703
Tssr31704 3 131113851 to 131113865 14 + TSS region transcription start site region 31704
Tssr31705 3 131113881 to 131113892 11 + TSS region transcription start site region 31705
Tssr31706 3 131123741 to 131123776 35 + TSS region transcription start site region 31706
Tssr1051 3 131127566 to 131127578 12 + TSS region transcription start site region 1051
D3Mit290 3 131127782 to 131127906 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 290
Tssr31707 3 131133263 to 131133267 4 + TSS region transcription start site region 31707
Tssr31708 3 131134453 to 131134459 6 + TSS region transcription start site region 31708
Tssr31709 3 131136146 to 131136150 4 + TSS region transcription start site region 31709
Gm42449 3 131136785 to 131139042 2257 + unclassified gene predicted gene 42449
Tssr31710 3 131156286 to 131156300 14 + TSS region transcription start site region 31710
Tssr31711 3 131156307 to 131156344 37 + TSS region transcription start site region 31711
Tssr31712 3 131156355 to 131156366 11 + TSS region transcription start site region 31712
Tssr31713 3 131156449 to 131156457 8 + TSS region transcription start site region 31713
Tssr31714 3 131156458 to 131156470 12 + TSS region transcription start site region 31714
Tssr31715 3 131159715 to 131159730 15 + TSS region transcription start site region 31715
Tssr31716 3 131170420 to 131170436 16 + TSS region transcription start site region 31716
Tssr35679 3 131171439 to 131171442 3 - TSS region transcription start site region 35679
Tssr31717 3 131171702 to 131171726 24 + TSS region transcription start site region 31717
Tssr31718 3 131184654 to 131184701 47 + TSS region transcription start site region 31718
Tssr31719 3 131189271 to 131189276 5 + TSS region transcription start site region 31719
Tssr31720 3 131189791 to 131189795 4 + TSS region transcription start site region 31720
6720418B01Rik 3 131191842 to 131192965 1123 unclassified gene RIKEN cDNA 6720418B01 gene
Tssr31721 3 131200106 to 131200145 39 + TSS region transcription start site region 31721
Tssr31722 3 131206520 to 131206524 4 + TSS region transcription start site region 31722
Tssr31723 3 131222791 to 131222793 2 + TSS region transcription start site region 31723
Tssr31724 3 131223828 to 131223837 9 + TSS region transcription start site region 31724
Tssr31725 3 131223938 to 131223951 13 + TSS region transcription start site region 31725
Hadh 3 131233419 to 131272101 38682 - protein coding gene hydroxyacyl-Coenzyme A dehydrogenase
Tssr35680 3 131233906 to 131233920 14 - TSS region transcription start site region 35680
Tssr35681 3 131234027 to 131234034 7 - TSS region transcription start site region 35681
Tssr35682 3 131234078 to 131234087 9 - TSS region transcription start site region 35682
Tssr35683 3 131234157 to 131234182 25 - TSS region transcription start site region 35683