Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:129791567-130331585

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrit3 3 129788291 to 129804030 15739 - protein coding gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 3
Tssr31652 3 129797563 to 129797572 9 + TSS region transcription start site region 31652
Gm36130 3 129797582 to 129815647 18065 + lncRNA gene predicted gene, 36130
Tssr31653 3 129797597 to 129797623 26 + TSS region transcription start site region 31653
Tssr35628 3 129804089 to 129804097 8 - TSS region transcription start site region 35628
Tssr35629 3 129804122 to 129804140 18 - TSS region transcription start site region 35629
Tssr35630 3 129804142 to 129804147 5 - TSS region transcription start site region 35630
Rrh 3 129808575 to 129822505 13930 - protein coding gene retinal pigment epithelium derived rhodopsin homolog
Tssr35631 3 129822425 to 129822432 7 - TSS region transcription start site region 35631
Tssr35632 3 129822471 to 129822482 11 - TSS region transcription start site region 35632
Tssr35633 3 129822487 to 129822510 23 - TSS region transcription start site region 35633
Tssr35634 3 129822517 to 129822530 13 - TSS region transcription start site region 35634
Tssr35635 3 129822534 to 129822545 11 - TSS region transcription start site region 35635
Gar1 3 129824912 to 129831396 6484 - protein coding gene GAR1 ribonucleoprotein
Cpgi13816 3 129830427 to 129831790 1363 CpG island CpG island 13816
Tssr35636 3 129831123 to 129831186 63 - TSS region transcription start site region 35636
Tssr35637 3 129831289 to 129831341 52 - TSS region transcription start site region 35637
Tssr35638 3 129831374 to 129831406 32 - TSS region transcription start site region 35638
Tssr31654 3 129836633 to 129836672 39 + TSS region transcription start site region 31654
Cfi 3 129836727 to 129875328 38601 + protein coding gene complement component factor i
Tssr31655 3 129836729 to 129836747 18 + TSS region transcription start site region 31655
Tssr31656 3 129836774 to 129836804 30 + TSS region transcription start site region 31656
Gm36180 3 129844236 to 129847227 2991 - lncRNA gene predicted gene, 36180
Tssr35639 3 129847014 to 129847063 49 - TSS region transcription start site region 35639
Tssr31657 3 129852889 to 129852893 4 + TSS region transcription start site region 31657
Cpgi13817 3 129878123 to 129879463 1340 CpG island CpG island 13817
Tssr31658 3 129878571 to 129878704 133 + TSS region transcription start site region 31658
Pla2g12a 3 129878606 to 129895825 17219 + protein coding gene phospholipase A2, group XIIA
Tssr31659 3 129878789 to 129878812 23 + TSS region transcription start site region 31659
Tssr31660 3 129881149 to 129881188 39 + TSS region transcription start site region 31660
D3Mit1006 3 129889794 to 129889913 119 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1006
D3Mit1004 3 129889876 to 129890000 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1004
D3Mit1005 3 129889983 to 129890124 141 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1005
Gm46825 3 129895906 to 129901392 5486 - lncRNA gene predicted gene, 46825
Cpgi13818 3 129901116 to 129901808 692 CpG island CpG island 13818
Tssr35640 3 129901344 to 129901362 18 - TSS region transcription start site region 35640
Tssr31661 3 129901419 to 129901430 11 + TSS region transcription start site region 31661
Casp6 3 129901425 to 129914103 12678 + protein coding gene caspase 6
Tssr31662 3 129901431 to 129901466 35 + TSS region transcription start site region 31662
Tssr31663 3 129901468 to 129901490 22 + TSS region transcription start site region 31663
Tssr35641 3 129901478 to 129901489 11 - TSS region transcription start site region 35641
Gm40150 3 129906485 to 129910348 3863 + lncRNA gene predicted gene, 40150
Mcub 3 129914960 to 129970206 55246 - protein coding gene mitochondrial calcium uniporter dominant negative beta subunit
Tssr31664 3 129935105 to 129935121 16 + TSS region transcription start site region 31664
Cpgi13819 3 129935884 to 129936134 250 CpG island CpG island 13819
Tssr35642 3 129946309 to 129946314 5 - TSS region transcription start site region 35642
Gm40151 3 129946518 to 129947189 671 - lncRNA gene predicted gene, 40151
Cpgi13820 3 129969393 to 129970369 976 CpG island CpG island 13820
Tssr35643 3 129970057 to 129970130 73 - TSS region transcription start site region 35643
Tssr35644 3 129970135 to 129970150 15 - TSS region transcription start site region 35644
Tssr35645 3 129970152 to 129970167 15 - TSS region transcription start site region 35645
Sec24b 3 129982759 to 130061553 78794 - protein coding gene Sec24 related gene family, member B (S. cerevisiae)
Tssr35646 3 129995640 to 129995653 13 - TSS region transcription start site region 35646
Tssr35647 3 130007547 to 130007560 13 - TSS region transcription start site region 35647
Tssr35648 3 130041031 to 130041063 32 - TSS region transcription start site region 35648
Tssr35649 3 130041189 to 130041206 17 - TSS region transcription start site region 35649
Tssr35650 3 130041346 to 130041358 12 - TSS region transcription start site region 35650
Tssr35651 3 130041366 to 130041379 13 - TSS region transcription start site region 35651
Tssr35652 3 130052225 to 130052239 14 - TSS region transcription start site region 35652
Cpgi13821 3 130059904 to 130061385 1481 CpG island CpG island 13821
Tssr35653 3 130060673 to 130060733 60 - TSS region transcription start site region 35653
Tssr35654 3 130060735 to 130060758 23 - TSS region transcription start site region 35654
Tssr31665 3 130060767 to 130060791 24 + TSS region transcription start site region 31665
Tssr35655 3 130060810 to 130060826 16 - TSS region transcription start site region 35655
Tssr35656 3 130060838 to 130060849 11 - TSS region transcription start site region 35656
Tssr35657 3 130060850 to 130060865 15 - TSS region transcription start site region 35657
Tssr35658 3 130061019 to 130061030 11 - TSS region transcription start site region 35658
Tssr35659 3 130061485 to 130061508 23 - TSS region transcription start site region 35659
Tssr35660 3 130061567 to 130061585 18 - TSS region transcription start site region 35660
Tssr31666 3 130068390 to 130068391 1 + TSS region transcription start site region 31666
Gm9396 3 130068412 to 130068978 566 + pseudogene predicted gene 9396
Gm42663 3 130080779 to 130081129 350 + pseudogene predicted gene 42663
Gm9397 3 130140380 to 130142042 1662 + pseudogene predicted gene 9397
Cpgi13822 3 130172792 to 130173002 210 CpG island CpG island 13822
Col25a1 3 130180336 to 130599884 419548 + protein coding gene collagen, type XXV, alpha 1
Cpgi13823 3 130180696 to 130181710 1014 CpG island CpG island 13823
Tssr31667 3 130180835 to 130180854 19 + TSS region transcription start site region 31667
Tssr31668 3 130180882 to 130180899 17 + TSS region transcription start site region 31668
Tssr31669 3 130185221 to 130185225 4 + TSS region transcription start site region 31669
Tssr31670 3 130201345 to 130201350 5 + TSS region transcription start site region 31670
Gm22682 3 130205465 to 130205571 106 + snRNA gene predicted gene, 22682
Tssr31671 3 130247036 to 130247039 3 + TSS region transcription start site region 31671
D3Mit357 3 130312624 to 130312718 94 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 357