Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:129644949-129864955

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Egf 3 129677565 to 129755316 77751 - protein coding gene epidermal growth factor
Tssr35618 3 129677999 to 129678006 7 - TSS region transcription start site region 35618
Tssr35619 3 129678435 to 129678445 10 - TSS region transcription start site region 35619
Tssr35620 3 129683285 to 129683324 39 - TSS region transcription start site region 35620
Gm24515 3 129684133 to 129684241 108 - miRNA gene predicted gene, 24515
Cpgi13815 3 129724996 to 129725411 415 CpG island CpG island 13815
Tssr35621 3 129725074 to 129725107 33 - TSS region transcription start site region 35621
Tssr35622 3 129726289 to 129726292 3 - TSS region transcription start site region 35622
Gm42697 3 129728845 to 129740188 11343 + antisense lncRNA gene predicted gene 42697
Gm42650 3 129745340 to 129750168 4828 + antisense lncRNA gene predicted gene 42650
Tssr1046 3 129753714 to 129753752 38 + TSS region transcription start site region 1046
6330410L21Rik 3 129753758 to 129763882 10124 + antisense lncRNA gene RIKEN cDNA 6330410L21 gene
Tssr35623 3 129754878 to 129754912 34 - TSS region transcription start site region 35623
Tssr35624 3 129754949 to 129754955 6 - TSS region transcription start site region 35624
Tssr35625 3 129755012 to 129755026 14 - TSS region transcription start site region 35625
Tssr35626 3 129755254 to 129755265 11 - TSS region transcription start site region 35626
Tssr35627 3 129755305 to 129755326 21 - TSS region transcription start site region 35627
Tssr31651 3 129757915 to 129757925 10 + TSS region transcription start site region 31651
Lrit3 3 129788291 to 129804030 15739 - protein coding gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 3
Tssr31652 3 129797563 to 129797572 9 + TSS region transcription start site region 31652
Gm36130 3 129797582 to 129815647 18065 + lncRNA gene predicted gene, 36130
Tssr31653 3 129797597 to 129797623 26 + TSS region transcription start site region 31653
Tssr35628 3 129804089 to 129804097 8 - TSS region transcription start site region 35628
Tssr35629 3 129804122 to 129804140 18 - TSS region transcription start site region 35629
Tssr35630 3 129804142 to 129804147 5 - TSS region transcription start site region 35630
Rrh 3 129808575 to 129822505 13930 - protein coding gene retinal pigment epithelium derived rhodopsin homolog
Tssr35631 3 129822425 to 129822432 7 - TSS region transcription start site region 35631
Tssr35632 3 129822471 to 129822482 11 - TSS region transcription start site region 35632
Tssr35633 3 129822487 to 129822510 23 - TSS region transcription start site region 35633
Tssr35634 3 129822517 to 129822530 13 - TSS region transcription start site region 35634
Tssr35635 3 129822534 to 129822545 11 - TSS region transcription start site region 35635
Gar1 3 129824912 to 129831396 6484 - protein coding gene GAR1 ribonucleoprotein
Cpgi13816 3 129830427 to 129831790 1363 CpG island CpG island 13816
Tssr35636 3 129831123 to 129831186 63 - TSS region transcription start site region 35636
Tssr35637 3 129831289 to 129831341 52 - TSS region transcription start site region 35637
Tssr35638 3 129831374 to 129831406 32 - TSS region transcription start site region 35638
Tssr31654 3 129836633 to 129836672 39 + TSS region transcription start site region 31654
Cfi 3 129836727 to 129875328 38601 + protein coding gene complement component factor i
Tssr31655 3 129836729 to 129836747 18 + TSS region transcription start site region 31655
Tssr31656 3 129836774 to 129836804 30 + TSS region transcription start site region 31656
Gm36180 3 129844236 to 129847227 2991 - lncRNA gene predicted gene, 36180
Tssr35639 3 129847014 to 129847063 49 - TSS region transcription start site region 35639
Tssr31657 3 129852889 to 129852893 4 + TSS region transcription start site region 31657