Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:127795658-128766091

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tifa 3 127789137 to 127798394 9257 + protein coding gene TRAF-interacting protein with forkhead-associated domain
Tssr31612 3 127798178 to 127798193 15 + TSS region transcription start site region 31612
Tssr31613 3 127798231 to 127798249 18 + TSS region transcription start site region 31613
Ap1ar 3 127807007 to 127837518 30511 - protein coding gene adaptor-related protein complex 1 associated regulatory protein
Tssr35603 3 127817266 to 127817273 7 - TSS region transcription start site region 35603
Gm43654 3 127829555 to 127832971 3416 - unclassified gene predicted gene 43654
Cpgi13802 3 127836781 to 127837929 1148 CpG island CpG island 13802
Gm43653 3 127836911 to 127838644 1733 + antisense lncRNA gene predicted gene 43653
Tssr35604 3 127837419 to 127837505 86 - TSS region transcription start site region 35604
Tssr31614 3 127861585 to 127861615 30 + TSS region transcription start site region 31614
Gm35585 3 127861599 to 127865261 3662 + lincRNA gene predicted gene, 35585
Gm43652 3 127863184 to 127863858 674 - unclassified gene predicted gene 43652
Fam241a 3 127869688 to 127896323 26635 - protein coding gene family with sequence similarity 241, member A
Tssr35605 3 127876721 to 127876730 9 - TSS region transcription start site region 35605
Tssr35606 3 127894604 to 127894608 4 - TSS region transcription start site region 35606
Tssr35607 3 127895508 to 127895513 5 - TSS region transcription start site region 35607
Cpgi13803 3 127895714 to 127896523 809 CpG island CpG island 13803
Tssr35608 3 127896220 to 127896233 13 - TSS region transcription start site region 35608
Tssr35609 3 127896247 to 127896270 23 - TSS region transcription start site region 35609
Tssr35610 3 127896271 to 127896337 66 - TSS region transcription start site region 35610
Tssr31615 3 127916164 to 127916169 5 + TSS region transcription start site region 31615
9830132P13Rik 3 127916172 to 127955220 39048 + lincRNA gene RIKEN cDNA 9830132P13 gene
Tssr31616 3 127930579 to 127930597 18 + TSS region transcription start site region 31616
Tssr31617 3 127930611 to 127930637 26 + TSS region transcription start site region 31617
Tssr31618 3 127930985 to 127930990 5 + TSS region transcription start site region 31618
Tssr31619 3 127950303 to 127950304 1 + TSS region transcription start site region 31619
Gm35667 3 127970921 to 127972878 1957 + lincRNA gene predicted gene, 35667
Gm10650 3 128038693 to 128040661 1968 + protein coding gene predicted gene 10650
D3Mit247 3 128110214 to 128110349 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 247a
D030025E07Rik 3 128117015 to 128231605 114590 - lncRNA gene RIKEN cDNA D030025E07 gene
Tssr1041 3 128258110 to 128258136 26 - TSS region transcription start site region 1041
Gm43656 3 128280658 to 128281091 433 - pseudogene predicted gene 43656
Bomb1 3 128339594 to 128339768 174 QTL bone marrow pre-B 1
D3Mit319 3 128339594 to 128339768 174 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 319
Tssr31620 3 128528691 to 128528694 3 + TSS region transcription start site region 31620
Gm22293 3 128540372 to 128540480 108 + snoRNA gene predicted gene, 22293
Tssr1042 3 128610938 to 128610951 13 + TSS region transcription start site region 1042
Tssr31621 3 128610954 to 128610963 9 + TSS region transcription start site region 31621
Tssr31622 3 128610970 to 128610995 25 + TSS region transcription start site region 31622
Gm43824 3 128610987 to 128887161 276174 + lincRNA gene predicted gene 43824
Gm40148 3 128685593 to 128761603 76010 - lncRNA gene predicted gene, 40148
4933424H11Rik 3 128699533 to 128701550 2017 - lincRNA gene RIKEN cDNA 4933424H11 gene