Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:127690611-128170637

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alpk1 3 127670310 to 127780527 110217 - protein coding gene alpha-kinase 1
Tssr35587 3 127690748 to 127690783 35 - TSS region transcription start site region 35587
Tssr35588 3 127691291 to 127691304 13 - TSS region transcription start site region 35588
Gm16238 3 127691935 to 127692520 585 - pseudogene predicted gene 16238
Tssr35589 3 127692546 to 127692548 2 - TSS region transcription start site region 35589
Cpgi13798 3 127695406 to 127695783 377 CpG island CpG island 13798
D3Mit109 3 127696334 to 127696565 231 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 109
1500005C15Rik 3 127714634 to 127717027 2393 - unclassified gene RIKEN cDNA 1500005C15 gene
Gm42587 3 127717206 to 127719186 1980 - unclassified gene predicted gene 42587
Gm23279 3 127731594 to 127731690 96 + rRNA gene predicted gene, 23279
Tssr35590 3 127734128 to 127734136 8 - TSS region transcription start site region 35590
Tssr35591 3 127780030 to 127780040 10 - TSS region transcription start site region 35591
Cpgi13799 3 127780171 to 127780544 373 CpG island CpG island 13799
Tssr35592 3 127780194 to 127780222 28 - TSS region transcription start site region 35592
Tssr35593 3 127780226 to 127780238 12 - TSS region transcription start site region 35593
Tssr35594 3 127780250 to 127780288 38 - TSS region transcription start site region 35594
Tssr35595 3 127780309 to 127780338 29 - TSS region transcription start site region 35595
Tssr35596 3 127780385 to 127780396 11 - TSS region transcription start site region 35596
Tssr35597 3 127780461 to 127780529 68 - TSS region transcription start site region 35597
Tssr31593 3 127780644 to 127780653 9 + TSS region transcription start site region 31593
Tifa 3 127789137 to 127798394 9257 + protein coding gene TRAF-interacting protein with forkhead-associated domain
Tssr31594 3 127789187 to 127789202 15 + TSS region transcription start site region 31594
Tssr31595 3 127789204 to 127789214 10 + TSS region transcription start site region 31595
Tssr31596 3 127789223 to 127789247 24 + TSS region transcription start site region 31596
Tssr31597 3 127789271 to 127789287 16 + TSS region transcription start site region 31597
Tssr31598 3 127789297 to 127789310 13 + TSS region transcription start site region 31598
Cpgi13800 3 127789497 to 127790128 631 CpG island CpG island 13800
Tssr35598 3 127789742 to 127789758 16 - TSS region transcription start site region 35598
Tssr31599 3 127789802 to 127789809 7 + TSS region transcription start site region 31599
Tssr35599 3 127789826 to 127789840 14 - TSS region transcription start site region 35599
Tssr35600 3 127789843 to 127789868 25 - TSS region transcription start site region 35600
Tssr31600 3 127789866 to 127789877 11 + TSS region transcription start site region 31600
Tssr35601 3 127789869 to 127789901 32 - TSS region transcription start site region 35601
Tssr31601 3 127789900 to 127789929 29 + TSS region transcription start site region 31601
Tssr31602 3 127789941 to 127789983 42 + TSS region transcription start site region 31602
Tssr31603 3 127789986 to 127790001 15 + TSS region transcription start site region 31603
Tssr31604 3 127790103 to 127790125 22 + TSS region transcription start site region 31604
Tssr35602 3 127790201 to 127790218 17 - TSS region transcription start site region 35602
Tssr31605 3 127790602 to 127790639 37 + TSS region transcription start site region 31605
Cpgi13801 3 127790638 to 127790949 311 CpG island CpG island 13801
Tssr31606 3 127790800 to 127790825 25 + TSS region transcription start site region 31606
Tssr31607 3 127791038 to 127791049 11 + TSS region transcription start site region 31607
Tssr31608 3 127791106 to 127791145 39 + TSS region transcription start site region 31608
Tssr31609 3 127791157 to 127791184 27 + TSS region transcription start site region 31609
Tssr31610 3 127791266 to 127791277 11 + TSS region transcription start site region 31610
Tssr31611 3 127791374 to 127791390 16 + TSS region transcription start site region 31611
Tssr31612 3 127798178 to 127798193 15 + TSS region transcription start site region 31612
Tssr31613 3 127798231 to 127798249 18 + TSS region transcription start site region 31613
Ap1ar 3 127807007 to 127837518 30511 - protein coding gene adaptor-related protein complex 1 associated regulatory protein
Tssr35603 3 127817266 to 127817273 7 - TSS region transcription start site region 35603
Gm43654 3 127829555 to 127832971 3416 - unclassified gene predicted gene 43654
Cpgi13802 3 127836781 to 127837929 1148 CpG island CpG island 13802
Gm43653 3 127836911 to 127838644 1733 + antisense lncRNA gene predicted gene 43653
Tssr35604 3 127837419 to 127837505 86 - TSS region transcription start site region 35604
Tssr31614 3 127861585 to 127861615 30 + TSS region transcription start site region 31614
Gm35585 3 127861599 to 127865261 3662 + lincRNA gene predicted gene, 35585
Gm43652 3 127863184 to 127863858 674 - unclassified gene predicted gene 43652
Fam241a 3 127869688 to 127896323 26635 - protein coding gene family with sequence similarity 241, member A
Tssr35605 3 127876721 to 127876730 9 - TSS region transcription start site region 35605
Tssr35606 3 127894604 to 127894608 4 - TSS region transcription start site region 35606
Tssr35607 3 127895508 to 127895513 5 - TSS region transcription start site region 35607
Cpgi13803 3 127895714 to 127896523 809 CpG island CpG island 13803
Tssr35608 3 127896220 to 127896233 13 - TSS region transcription start site region 35608
Tssr35609 3 127896247 to 127896270 23 - TSS region transcription start site region 35609
Tssr35610 3 127896271 to 127896337 66 - TSS region transcription start site region 35610
Tssr31615 3 127916164 to 127916169 5 + TSS region transcription start site region 31615
9830132P13Rik 3 127916172 to 127955220 39048 + lincRNA gene RIKEN cDNA 9830132P13 gene
Tssr31616 3 127930579 to 127930597 18 + TSS region transcription start site region 31616
Tssr31617 3 127930611 to 127930637 26 + TSS region transcription start site region 31617
Tssr31618 3 127930985 to 127930990 5 + TSS region transcription start site region 31618
Tssr31619 3 127950303 to 127950304 1 + TSS region transcription start site region 31619
Gm35667 3 127970921 to 127972878 1957 + lincRNA gene predicted gene, 35667
Gm10650 3 128038693 to 128040661 1968 + protein coding gene predicted gene 10650
D3Mit247 3 128110214 to 128110349 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 247a
D030025E07Rik 3 128117015 to 128231605 114590 - lncRNA gene RIKEN cDNA D030025E07 gene