Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:127275658-129286091

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq3 3 122395162 to 127426367 5031205 QTL conditioned fear QTL 3
Ank2 3 126921612 to 127499350 577738 - protein coding gene ankyrin 2, brain
Tssr35567 3 127282346 to 127282355 9 - TSS region transcription start site region 35567
Tssr35568 3 127282367 to 127282384 17 - TSS region transcription start site region 35568
Tssr35569 3 127282398 to 127282401 3 - TSS region transcription start site region 35569
Tssr35570 3 127282445 to 127282475 30 - TSS region transcription start site region 35570
Gm42971 3 127283481 to 127285559 2078 - unclassified gene predicted gene 42971
Gm42970 3 127298322 to 127299673 1351 - unclassified gene predicted gene 42970
Cpgi13789 3 127309479 to 127309804 325 CpG island CpG island 13789
Gm42969 3 127390076 to 127393706 3630 - unclassified gene predicted gene 42969
D3Mit253 3 127393081 to 127393186 105 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 253
Gm46824 3 127393905 to 127404040 10135 - lncRNA gene predicted gene, 46824
Cpgi13790 3 127408687 to 127408915 228 CpG island CpG island 13790
Tssr35571 3 127408880 to 127408887 7 - TSS region transcription start site region 35571
Tssr35572 3 127408937 to 127408981 44 - TSS region transcription start site region 35572
Tssr35573 3 127408986 to 127409008 22 - TSS region transcription start site region 35573
Tssr35574 3 127409014 to 127409043 29 - TSS region transcription start site region 35574
Tssr35575 3 127409044 to 127409064 20 - TSS region transcription start site region 35575
Gm35535 3 127466244 to 127470787 4543 - lncRNA gene predicted gene, 35535
Gm43355 3 127479435 to 127481427 1992 - pseudogene predicted gene 43355
Gm42525 3 127480179 to 127481190 1011 - pseudogene predicted gene 42525
Gm44494 3 127481120 to 127481248 128 + miRNA gene predicted gene, 44494
Cpgi13791 3 127498332 to 127499409 1077 CpG island CpG island 13791
Tssr35576 3 127498986 to 127499038 52 - TSS region transcription start site region 35576
Tssr35577 3 127499049 to 127499071 22 - TSS region transcription start site region 35577
Tssr35578 3 127499076 to 127499093 17 - TSS region transcription start site region 35578
Tssr35579 3 127499095 to 127499137 42 - TSS region transcription start site region 35579
Tssr31586 3 127512811 to 127512817 6 + TSS region transcription start site region 31586
Gm43354 3 127512900 to 127513245 345 + pseudogene predicted gene 43354
Tssr35580 3 127522373 to 127522399 26 - TSS region transcription start site region 35580
Larp7 3 127536714 to 127553349 16635 - protein coding gene La ribonucleoprotein domain family, member 7
Tssr35581 3 127541424 to 127541464 40 - TSS region transcription start site region 35581
Tssr35582 3 127541481 to 127541495 14 - TSS region transcription start site region 35582
Tssr31587 3 127545083 to 127545098 15 + TSS region transcription start site region 31587
Mir302b 3 127545228 to 127545301 73 + miRNA gene microRNA 302b
Mirc20 3 127545228 to 127545807 579 complex/cluster/region microRNA cluster 20, including Mir302b through Mir367
Mir302c 3 127545363 to 127545430 67 + miRNA gene microRNA 302c
Mir302a 3 127545496 to 127545564 68 + miRNA gene microRNA 302a
Mir302d 3 127545624 to 127545689 65 + miRNA gene microRNA 302d
Mir367 3 127545733 to 127545807 74 + miRNA gene microRNA 367
Cpgi13792 3 127552818 to 127553855 1037 CpG island CpG island 13792
Tssr35583 3 127553019 to 127553033 14 - TSS region transcription start site region 35583
Tssr35584 3 127553210 to 127553225 15 - TSS region transcription start site region 35584
Tssr35585 3 127553233 to 127553364 131 - TSS region transcription start site region 35585
Tssr31588 3 127553462 to 127553512 50 + TSS region transcription start site region 31588
Zgrf1 3 127553489 to 127618023 64534 + protein coding gene zinc finger, GRF-type containing 1
Gm43729 3 127556228 to 127557561 1333 - antisense lncRNA gene predicted gene 43729
Cpgi13793 3 127625264 to 127625709 445 CpG island CpG island 13793
Gm40147 3 127626162 to 127628117 1955 - lncRNA gene predicted gene, 40147
Cpgi13794 3 127626207 to 127626372 165 CpG island CpG island 13794
Cpgi13795 3 127628359 to 127628596 237 CpG island CpG island 13795
Cpgi13796 3 127632276 to 127634817 2541 CpG island CpG island 13796
Tssr31589 3 127632738 to 127632765 27 + TSS region transcription start site region 31589
Tssr31590 3 127632798 to 127632810 12 + TSS region transcription start site region 31590
Tssr31591 3 127633134 to 127633140 6 + TSS region transcription start site region 31591
Neurog2 3 127633145 to 127635631 2486 + protein coding gene neurogenin 2
Tssr31592 3 127633197 to 127633212 15 + TSS region transcription start site region 31592
Cpgi13797 3 127639776 to 127640238 462 CpG island CpG island 13797
Alpk1 3 127670310 to 127780527 110217 - protein coding gene alpha-kinase 1
Tssr35586 3 127688538 to 127688552 14 - TSS region transcription start site region 35586
Tssr35587 3 127690748 to 127690783 35 - TSS region transcription start site region 35587
Tssr35588 3 127691291 to 127691304 13 - TSS region transcription start site region 35588
Gm16238 3 127691935 to 127692520 585 - pseudogene predicted gene 16238
Tssr35589 3 127692546 to 127692548 2 - TSS region transcription start site region 35589
Cpgi13798 3 127695406 to 127695783 377 CpG island CpG island 13798
D3Mit109 3 127696334 to 127696565 231 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 109
1500005C15Rik 3 127714634 to 127717027 2393 - unclassified gene RIKEN cDNA 1500005C15 gene
Gm42587 3 127717206 to 127719186 1980 - unclassified gene predicted gene 42587
Gm23279 3 127731594 to 127731690 96 + rRNA gene predicted gene, 23279
Tssr35590 3 127734128 to 127734136 8 - TSS region transcription start site region 35590
Tssr35591 3 127780030 to 127780040 10 - TSS region transcription start site region 35591
Cpgi13799 3 127780171 to 127780544 373 CpG island CpG island 13799
Tssr35592 3 127780194 to 127780222 28 - TSS region transcription start site region 35592
Tssr35593 3 127780226 to 127780238 12 - TSS region transcription start site region 35593
Tssr35594 3 127780250 to 127780288 38 - TSS region transcription start site region 35594
Tssr35595 3 127780309 to 127780338 29 - TSS region transcription start site region 35595
Tssr35596 3 127780385 to 127780396 11 - TSS region transcription start site region 35596
Tssr35597 3 127780461 to 127780529 68 - TSS region transcription start site region 35597
Tssr31593 3 127780644 to 127780653 9 + TSS region transcription start site region 31593
Tifa 3 127789137 to 127798394 9257 + protein coding gene TRAF-interacting protein with forkhead-associated domain
Tssr31594 3 127789187 to 127789202 15 + TSS region transcription start site region 31594
Tssr31595 3 127789204 to 127789214 10 + TSS region transcription start site region 31595
Tssr31596 3 127789223 to 127789247 24 + TSS region transcription start site region 31596
Tssr31597 3 127789271 to 127789287 16 + TSS region transcription start site region 31597
Tssr31598 3 127789297 to 127789310 13 + TSS region transcription start site region 31598
Cpgi13800 3 127789497 to 127790128 631 CpG island CpG island 13800
Tssr35598 3 127789742 to 127789758 16 - TSS region transcription start site region 35598
Tssr31599 3 127789802 to 127789809 7 + TSS region transcription start site region 31599
Tssr35599 3 127789826 to 127789840 14 - TSS region transcription start site region 35599
Tssr35600 3 127789843 to 127789868 25 - TSS region transcription start site region 35600
Tssr31600 3 127789866 to 127789877 11 + TSS region transcription start site region 31600
Tssr35601 3 127789869 to 127789901 32 - TSS region transcription start site region 35601
Tssr31601 3 127789900 to 127789929 29 + TSS region transcription start site region 31601
Tssr31602 3 127789941 to 127789983 42 + TSS region transcription start site region 31602
Tssr31603 3 127789986 to 127790001 15 + TSS region transcription start site region 31603
Tssr31604 3 127790103 to 127790125 22 + TSS region transcription start site region 31604
Tssr35602 3 127790201 to 127790218 17 - TSS region transcription start site region 35602
Tssr31605 3 127790602 to 127790639 37 + TSS region transcription start site region 31605
Cpgi13801 3 127790638 to 127790949 311 CpG island CpG island 13801
Tssr31606 3 127790800 to 127790825 25 + TSS region transcription start site region 31606
Tssr31607 3 127791038 to 127791049 11 + TSS region transcription start site region 31607
Tssr31608 3 127791106 to 127791145 39 + TSS region transcription start site region 31608
Tssr31609 3 127791157 to 127791184 27 + TSS region transcription start site region 31609
Tssr31610 3 127791266 to 127791277 11 + TSS region transcription start site region 31610
Tssr31611 3 127791374 to 127791390 16 + TSS region transcription start site region 31611
Tssr31612 3 127798178 to 127798193 15 + TSS region transcription start site region 31612
Tssr31613 3 127798231 to 127798249 18 + TSS region transcription start site region 31613
Ap1ar 3 127807007 to 127837518 30511 - protein coding gene adaptor-related protein complex 1 associated regulatory protein
Tssr35603 3 127817266 to 127817273 7 - TSS region transcription start site region 35603
Gm43654 3 127829555 to 127832971 3416 - unclassified gene predicted gene 43654
Cpgi13802 3 127836781 to 127837929 1148 CpG island CpG island 13802
Gm43653 3 127836911 to 127838644 1733 + antisense lncRNA gene predicted gene 43653
Tssr35604 3 127837419 to 127837505 86 - TSS region transcription start site region 35604
Tssr31614 3 127861585 to 127861615 30 + TSS region transcription start site region 31614
Gm35585 3 127861599 to 127865261 3662 + lincRNA gene predicted gene, 35585
Gm43652 3 127863184 to 127863858 674 - unclassified gene predicted gene 43652
Fam241a 3 127869688 to 127896323 26635 - protein coding gene family with sequence similarity 241, member A
Tssr35605 3 127876721 to 127876730 9 - TSS region transcription start site region 35605
Tssr35606 3 127894604 to 127894608 4 - TSS region transcription start site region 35606
Tssr35607 3 127895508 to 127895513 5 - TSS region transcription start site region 35607
Cpgi13803 3 127895714 to 127896523 809 CpG island CpG island 13803
Tssr35608 3 127896220 to 127896233 13 - TSS region transcription start site region 35608
Tssr35609 3 127896247 to 127896270 23 - TSS region transcription start site region 35609
Tssr35610 3 127896271 to 127896337 66 - TSS region transcription start site region 35610
Tssr31615 3 127916164 to 127916169 5 + TSS region transcription start site region 31615
9830132P13Rik 3 127916172 to 127955220 39048 + lincRNA gene RIKEN cDNA 9830132P13 gene
Tssr31616 3 127930579 to 127930597 18 + TSS region transcription start site region 31616
Tssr31617 3 127930611 to 127930637 26 + TSS region transcription start site region 31617
Tssr31618 3 127930985 to 127930990 5 + TSS region transcription start site region 31618
Tssr31619 3 127950303 to 127950304 1 + TSS region transcription start site region 31619
Gm35667 3 127970921 to 127972878 1957 + lincRNA gene predicted gene, 35667
Gm10650 3 128038693 to 128040661 1968 + protein coding gene predicted gene 10650
D3Mit247 3 128110214 to 128110349 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 247a
D030025E07Rik 3 128117015 to 128231605 114590 - lncRNA gene RIKEN cDNA D030025E07 gene
Tssr1041 3 128258110 to 128258136 26 - TSS region transcription start site region 1041
Gm43656 3 128280658 to 128281091 433 - pseudogene predicted gene 43656
D3Mit319 3 128339594 to 128339768 174 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 319
Bomb1 3 128339594 to 128339768 174 QTL bone marrow pre-B 1
Tssr31620 3 128528691 to 128528694 3 + TSS region transcription start site region 31620
Gm22293 3 128540372 to 128540480 108 + snoRNA gene predicted gene, 22293
Tssr1042 3 128610938 to 128610951 13 + TSS region transcription start site region 1042
Tssr31621 3 128610954 to 128610963 9 + TSS region transcription start site region 31621
Tssr31622 3 128610970 to 128610995 25 + TSS region transcription start site region 31622
Gm43824 3 128610987 to 128887161 276174 + lincRNA gene predicted gene 43824
Gm40148 3 128685593 to 128761603 76010 - lncRNA gene predicted gene, 40148
4933424H11Rik 3 128699533 to 128701550 2017 - lincRNA gene RIKEN cDNA 4933424H11 gene
Gm4410 3 128839833 to 128840513 680 + pseudogene predicted gene 4410
Tssr31623 3 128843778 to 128843781 3 + TSS region transcription start site region 31623
D3Mit145 3 128856356 to 128856504 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 145
D3Mit313 3 128921852 to 128921952 100 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 313
Gm9387 3 128953779 to 128955098 1319 - pseudogene predicted pseudogene 9387
Gm35726 3 128996150 to 129105537 109387 - lncRNA gene predicted gene, 35726
Gm28543 3 129067805 to 129070544 2739 - lincRNA gene predicted gene 28543
Tssr35611 3 129105397 to 129105406 9 - TSS region transcription start site region 35611
Gm40149 3 129176254 to 129198939 22685 - lncRNA gene predicted gene, 40149
Tssr31624 3 129194645 to 129194656 11 + TSS region transcription start site region 31624
Cpgi13804 3 129195194 to 129195382 188 CpG island CpG island 13804
Cpgi13805 3 129199226 to 129200372 1146 CpG island CpG island 13805
Tssr31625 3 129199516 to 129199526 10 + TSS region transcription start site region 31625
Pitx2 3 129199878 to 129219591 19713 + protein coding gene paired-like homeodomain transcription factor 2
Tssr31626 3 129199906 to 129199913 7 + TSS region transcription start site region 31626
Tssr31627 3 129199919 to 129199943 24 + TSS region transcription start site region 31627
Tssr31628 3 129199960 to 129199975 15 + TSS region transcription start site region 31628
Tssr31629 3 129202525 to 129202536 11 + TSS region transcription start site region 31629
Cpgi13806 3 129203613 to 129205181 1568 CpG island CpG island 13806
Cpgi13807 3 129207170 to 129207537 367 CpG island CpG island 13807
Tssr31630 3 129210004 to 129210012 8 + TSS region transcription start site region 31630
Gm27195 3 129210006 to 129211500 1494 + sense intronic lncRNA gene predicted gene 27195
Tssr1043 3 129210016 to 129210024 8 + TSS region transcription start site region 1043
Cpgi13808 3 129213537 to 129215071 1534 CpG island CpG island 13808
Tssr31631 3 129213920 to 129213938 18 + TSS region transcription start site region 31631
Tssr31632 3 129213950 to 129213972 22 + TSS region transcription start site region 31632
Tssr31633 3 129214269 to 129214305 36 + TSS region transcription start site region 31633
Cpgi13809 3 129215291 to 129216303 1012 CpG island CpG island 13809
Tssr31634 3 129215476 to 129215495 19 + TSS region transcription start site region 31634
Tssr31635 3 129215515 to 129215530 15 + TSS region transcription start site region 31635
Tssr35612 3 129216902 to 129216937 35 - TSS region transcription start site region 35612
Tssr35613 3 129217228 to 129217259 31 - TSS region transcription start site region 35613
Tssr31636 3 129217562 to 129217579 17 + TSS region transcription start site region 31636
Tssr31637 3 129217583 to 129217603 20 + TSS region transcription start site region 31637
Tssr31638 3 129217890 to 129217922 32 + TSS region transcription start site region 31638
Cpgi13810 3 129218307 to 129218970 663 CpG island CpG island 13810
Tssr31639 3 129221518 to 129221559 41 + TSS region transcription start site region 31639
Cpgi13811 3 129221841 to 129222090 249 CpG island CpG island 13811
Gm43697 3 129222948 to 129225528 2580 - unclassified gene predicted gene 43697
Cpgi13812 3 129224660 to 129225484 824 CpG island CpG island 13812
Tssr35614 3 129225522 to 129225542 20 - TSS region transcription start site region 35614
Cpgi13813 3 129256370 to 129256697 327 CpG island CpG island 13813
Enpep 3 129269175 to 129332720 63545 - protein coding gene glutamyl aminopeptidase
Gm42628 3 129285269 to 129286032 763 + pseudogene predicted gene 42628