Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:126834843-128744868

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203 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq3 3 122395162 to 127426367 5031205 QTL conditioned fear QTL 3
Camk2d 3 126596354 to 126846326 249972 + protein coding gene calcium/calmodulin-dependent protein kinase II, delta
Tssr31585 3 126844673 to 126844677 4 + TSS region transcription start site region 31585
Ank2 3 126921612 to 127499350 577738 - protein coding gene ankyrin 2, brain
Tssr35529 3 126921810 to 126921813 3 - TSS region transcription start site region 35529
Tssr35530 3 126922740 to 126922751 11 - TSS region transcription start site region 35530
Tssr35531 3 126922752 to 126922773 21 - TSS region transcription start site region 35531
Tssr35532 3 126922825 to 126922847 22 - TSS region transcription start site region 35532
Tssr35533 3 126922849 to 126922859 10 - TSS region transcription start site region 35533
Tssr35534 3 126922894 to 126922919 25 - TSS region transcription start site region 35534
Tssr35535 3 126922926 to 126922949 23 - TSS region transcription start site region 35535
Tssr35536 3 126922957 to 126922968 11 - TSS region transcription start site region 35536
Tssr35537 3 126923024 to 126923037 13 - TSS region transcription start site region 35537
Tssr35538 3 126936664 to 126936678 14 - TSS region transcription start site region 35538
Tssr35539 3 126942815 to 126942827 12 - TSS region transcription start site region 35539
A930036I15Rik 3 126966475 to 126967519 1044 - unclassified gene RIKEN cDNA A930036I15 gene
Tssr35540 3 126972695 to 126972700 5 - TSS region transcription start site region 35540
Gm43322 3 126974256 to 126975867 1611 - unclassified gene predicted gene 43322
Gm43765 3 126986808 to 126987700 892 - unclassified gene predicted gene 43765
Cpgi13786 3 126997825 to 126998036 211 CpG island CpG island 13786
Tssr35541 3 126997946 to 126997985 39 - TSS region transcription start site region 35541
Tssr1040 3 126997993 to 126998021 28 - TSS region transcription start site region 1040
Tssr35542 3 126998408 to 126998463 55 - TSS region transcription start site region 35542
Tssr35543 3 126998520 to 126998543 23 - TSS region transcription start site region 35543
Gm25501 3 127005369 to 127005500 131 + snoRNA gene predicted gene, 25501
Gm43750 3 127008309 to 127010801 2492 - unclassified gene predicted gene 43750
Tssr35544 3 127027553 to 127027585 32 - TSS region transcription start site region 35544
Tssr35545 3 127027663 to 127027675 12 - TSS region transcription start site region 35545
D3Mit348 3 127041233 to 127041356 123 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 348
Cdcs1 3 127041233 to 127041356 123 QTL cytokine deficiency colitis susceptibility 1
Gm43751 3 127048976 to 127052046 3070 - unclassified gene predicted gene 43751
Tssr35546 3 127063712 to 127063750 38 - TSS region transcription start site region 35546
Tssr35547 3 127124847 to 127124886 39 - TSS region transcription start site region 35547
Gm42974 3 127137837 to 127140490 2653 - unclassified gene predicted gene 42974
Tssr35548 3 127140448 to 127140452 4 - TSS region transcription start site region 35548
Gm16958 3 127161304 to 127168288 6984 + antisense lncRNA gene predicted gene, 16958
Tssr35549 3 127161922 to 127161934 12 - TSS region transcription start site region 35549
Cpgi13787 3 127162008 to 127162763 755 CpG island CpG island 13787
Tssr35550 3 127162046 to 127162093 47 - TSS region transcription start site region 35550
Tssr35551 3 127162143 to 127162174 31 - TSS region transcription start site region 35551
Tssr35552 3 127162195 to 127162259 64 - TSS region transcription start site region 35552
Tssr35553 3 127162328 to 127162360 32 - TSS region transcription start site region 35553
Tssr35554 3 127162365 to 127162385 20 - TSS region transcription start site region 35554
Tssr35555 3 127162399 to 127162416 17 - TSS region transcription start site region 35555
Tssr35556 3 127162542 to 127162580 38 - TSS region transcription start site region 35556
C230031I18Rik 3 127180276 to 127183973 3697 - unclassified gene RIKEN cDNA C230031I18 gene
Tssr35557 3 127194656 to 127194658 2 - TSS region transcription start site region 35557
Tssr35558 3 127204841 to 127204845 4 - TSS region transcription start site region 35558
Tssr35559 3 127225318 to 127225322 4 - TSS region transcription start site region 35559
Cpgi13788 3 127225743 to 127225992 249 CpG island CpG island 13788
Tssr35560 3 127225894 to 127225915 21 - TSS region transcription start site region 35560
Tssr35561 3 127225917 to 127225959 42 - TSS region transcription start site region 35561
Tssr35562 3 127226016 to 127226021 5 - TSS region transcription start site region 35562
Tssr35563 3 127226075 to 127226096 21 - TSS region transcription start site region 35563
Gm42973 3 127240576 to 127243775 3199 - unclassified gene predicted gene 42973
Tssr35564 3 127240661 to 127240678 17 - TSS region transcription start site region 35564
Tssr35565 3 127240772 to 127240788 16 - TSS region transcription start site region 35565
Tssr35566 3 127240790 to 127240798 8 - TSS region transcription start site region 35566
Gm42972 3 127266673 to 127272289 5616 - unclassified gene predicted gene 42972
Tssr35567 3 127282346 to 127282355 9 - TSS region transcription start site region 35567
Tssr35568 3 127282367 to 127282384 17 - TSS region transcription start site region 35568
Tssr35569 3 127282398 to 127282401 3 - TSS region transcription start site region 35569
Tssr35570 3 127282445 to 127282475 30 - TSS region transcription start site region 35570
Gm42971 3 127283481 to 127285559 2078 - unclassified gene predicted gene 42971
Gm42970 3 127298322 to 127299673 1351 - unclassified gene predicted gene 42970
Cpgi13789 3 127309479 to 127309804 325 CpG island CpG island 13789
Gm42969 3 127390076 to 127393706 3630 - unclassified gene predicted gene 42969
D3Mit253 3 127393081 to 127393186 105 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 253
Gm46824 3 127393905 to 127404040 10135 - lncRNA gene predicted gene, 46824
Cpgi13790 3 127408687 to 127408915 228 CpG island CpG island 13790
Tssr35571 3 127408880 to 127408887 7 - TSS region transcription start site region 35571
Tssr35572 3 127408937 to 127408981 44 - TSS region transcription start site region 35572
Tssr35573 3 127408986 to 127409008 22 - TSS region transcription start site region 35573
Tssr35574 3 127409014 to 127409043 29 - TSS region transcription start site region 35574
Tssr35575 3 127409044 to 127409064 20 - TSS region transcription start site region 35575
Gm35535 3 127466244 to 127470787 4543 - lncRNA gene predicted gene, 35535
Gm43355 3 127479435 to 127481427 1992 - pseudogene predicted gene 43355
Gm42525 3 127480179 to 127481190 1011 - pseudogene predicted gene 42525
Gm44494 3 127481120 to 127481248 128 + miRNA gene predicted gene, 44494
Cpgi13791 3 127498332 to 127499409 1077 CpG island CpG island 13791
Tssr35576 3 127498986 to 127499038 52 - TSS region transcription start site region 35576
Tssr35577 3 127499049 to 127499071 22 - TSS region transcription start site region 35577
Tssr35578 3 127499076 to 127499093 17 - TSS region transcription start site region 35578
Tssr35579 3 127499095 to 127499137 42 - TSS region transcription start site region 35579
Tssr31586 3 127512811 to 127512817 6 + TSS region transcription start site region 31586
Gm43354 3 127512900 to 127513245 345 + pseudogene predicted gene 43354
Tssr35580 3 127522373 to 127522399 26 - TSS region transcription start site region 35580
Larp7 3 127536714 to 127553349 16635 - protein coding gene La ribonucleoprotein domain family, member 7
Tssr35581 3 127541424 to 127541464 40 - TSS region transcription start site region 35581
Tssr35582 3 127541481 to 127541495 14 - TSS region transcription start site region 35582
Tssr31587 3 127545083 to 127545098 15 + TSS region transcription start site region 31587
Mirc20 3 127545228 to 127545807 579 complex/cluster/region microRNA cluster 20, including Mir302b through Mir367
Mir302b 3 127545228 to 127545301 73 + miRNA gene microRNA 302b
Mir302c 3 127545363 to 127545430 67 + miRNA gene microRNA 302c
Mir302a 3 127545496 to 127545564 68 + miRNA gene microRNA 302a
Mir302d 3 127545624 to 127545689 65 + miRNA gene microRNA 302d
Mir367 3 127545733 to 127545807 74 + miRNA gene microRNA 367
Cpgi13792 3 127552818 to 127553855 1037 CpG island CpG island 13792
Tssr35583 3 127553019 to 127553033 14 - TSS region transcription start site region 35583
Tssr35584 3 127553210 to 127553225 15 - TSS region transcription start site region 35584
Tssr35585 3 127553233 to 127553364 131 - TSS region transcription start site region 35585
Tssr31588 3 127553462 to 127553512 50 + TSS region transcription start site region 31588
Zgrf1 3 127553489 to 127618023 64534 + protein coding gene zinc finger, GRF-type containing 1
Gm43729 3 127556228 to 127557561 1333 - antisense lncRNA gene predicted gene 43729
Cpgi13793 3 127625264 to 127625709 445 CpG island CpG island 13793
Gm40147 3 127626162 to 127628117 1955 - lncRNA gene predicted gene, 40147
Cpgi13794 3 127626207 to 127626372 165 CpG island CpG island 13794
Cpgi13795 3 127628359 to 127628596 237 CpG island CpG island 13795
Cpgi13796 3 127632276 to 127634817 2541 CpG island CpG island 13796
Tssr31589 3 127632738 to 127632765 27 + TSS region transcription start site region 31589
Tssr31590 3 127632798 to 127632810 12 + TSS region transcription start site region 31590
Tssr31591 3 127633134 to 127633140 6 + TSS region transcription start site region 31591
Neurog2 3 127633145 to 127635631 2486 + protein coding gene neurogenin 2
Tssr31592 3 127633197 to 127633212 15 + TSS region transcription start site region 31592
Cpgi13797 3 127639776 to 127640238 462 CpG island CpG island 13797
Alpk1 3 127670310 to 127780527 110217 - protein coding gene alpha-kinase 1
Tssr35586 3 127688538 to 127688552 14 - TSS region transcription start site region 35586
Tssr35587 3 127690748 to 127690783 35 - TSS region transcription start site region 35587
Tssr35588 3 127691291 to 127691304 13 - TSS region transcription start site region 35588
Gm16238 3 127691935 to 127692520 585 - pseudogene predicted gene 16238
Tssr35589 3 127692546 to 127692548 2 - TSS region transcription start site region 35589
Cpgi13798 3 127695406 to 127695783 377 CpG island CpG island 13798
D3Mit109 3 127696334 to 127696565 231 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 109
1500005C15Rik 3 127714634 to 127717027 2393 - unclassified gene RIKEN cDNA 1500005C15 gene
Gm42587 3 127717206 to 127719186 1980 - unclassified gene predicted gene 42587
Gm23279 3 127731594 to 127731690 96 + rRNA gene predicted gene, 23279
Tssr35590 3 127734128 to 127734136 8 - TSS region transcription start site region 35590
Tssr35591 3 127780030 to 127780040 10 - TSS region transcription start site region 35591
Cpgi13799 3 127780171 to 127780544 373 CpG island CpG island 13799
Tssr35592 3 127780194 to 127780222 28 - TSS region transcription start site region 35592
Tssr35593 3 127780226 to 127780238 12 - TSS region transcription start site region 35593
Tssr35594 3 127780250 to 127780288 38 - TSS region transcription start site region 35594
Tssr35595 3 127780309 to 127780338 29 - TSS region transcription start site region 35595
Tssr35596 3 127780385 to 127780396 11 - TSS region transcription start site region 35596
Tssr35597 3 127780461 to 127780529 68 - TSS region transcription start site region 35597
Tssr31593 3 127780644 to 127780653 9 + TSS region transcription start site region 31593
Tifa 3 127789137 to 127798394 9257 + protein coding gene TRAF-interacting protein with forkhead-associated domain
Tssr31594 3 127789187 to 127789202 15 + TSS region transcription start site region 31594
Tssr31595 3 127789204 to 127789214 10 + TSS region transcription start site region 31595
Tssr31596 3 127789223 to 127789247 24 + TSS region transcription start site region 31596
Tssr31597 3 127789271 to 127789287 16 + TSS region transcription start site region 31597
Tssr31598 3 127789297 to 127789310 13 + TSS region transcription start site region 31598
Cpgi13800 3 127789497 to 127790128 631 CpG island CpG island 13800
Tssr35598 3 127789742 to 127789758 16 - TSS region transcription start site region 35598
Tssr31599 3 127789802 to 127789809 7 + TSS region transcription start site region 31599
Tssr35599 3 127789826 to 127789840 14 - TSS region transcription start site region 35599
Tssr35600 3 127789843 to 127789868 25 - TSS region transcription start site region 35600
Tssr31600 3 127789866 to 127789877 11 + TSS region transcription start site region 31600
Tssr35601 3 127789869 to 127789901 32 - TSS region transcription start site region 35601
Tssr31601 3 127789900 to 127789929 29 + TSS region transcription start site region 31601
Tssr31602 3 127789941 to 127789983 42 + TSS region transcription start site region 31602
Tssr31603 3 127789986 to 127790001 15 + TSS region transcription start site region 31603
Tssr31604 3 127790103 to 127790125 22 + TSS region transcription start site region 31604
Tssr35602 3 127790201 to 127790218 17 - TSS region transcription start site region 35602
Tssr31605 3 127790602 to 127790639 37 + TSS region transcription start site region 31605
Cpgi13801 3 127790638 to 127790949 311 CpG island CpG island 13801
Tssr31606 3 127790800 to 127790825 25 + TSS region transcription start site region 31606
Tssr31607 3 127791038 to 127791049 11 + TSS region transcription start site region 31607
Tssr31608 3 127791106 to 127791145 39 + TSS region transcription start site region 31608
Tssr31609 3 127791157 to 127791184 27 + TSS region transcription start site region 31609
Tssr31610 3 127791266 to 127791277 11 + TSS region transcription start site region 31610
Tssr31611 3 127791374 to 127791390 16 + TSS region transcription start site region 31611
Tssr31612 3 127798178 to 127798193 15 + TSS region transcription start site region 31612
Tssr31613 3 127798231 to 127798249 18 + TSS region transcription start site region 31613
Ap1ar 3 127807007 to 127837518 30511 - protein coding gene adaptor-related protein complex 1 associated regulatory protein
Tssr35603 3 127817266 to 127817273 7 - TSS region transcription start site region 35603
Gm43654 3 127829555 to 127832971 3416 - unclassified gene predicted gene 43654
Cpgi13802 3 127836781 to 127837929 1148 CpG island CpG island 13802
Gm43653 3 127836911 to 127838644 1733 + antisense lncRNA gene predicted gene 43653
Tssr35604 3 127837419 to 127837505 86 - TSS region transcription start site region 35604
Tssr31614 3 127861585 to 127861615 30 + TSS region transcription start site region 31614
Gm35585 3 127861599 to 127865261 3662 + lincRNA gene predicted gene, 35585
Gm43652 3 127863184 to 127863858 674 - unclassified gene predicted gene 43652
Fam241a 3 127869688 to 127896323 26635 - protein coding gene family with sequence similarity 241, member A
Tssr35605 3 127876721 to 127876730 9 - TSS region transcription start site region 35605
Tssr35606 3 127894604 to 127894608 4 - TSS region transcription start site region 35606
Tssr35607 3 127895508 to 127895513 5 - TSS region transcription start site region 35607
Cpgi13803 3 127895714 to 127896523 809 CpG island CpG island 13803
Tssr35608 3 127896220 to 127896233 13 - TSS region transcription start site region 35608
Tssr35609 3 127896247 to 127896270 23 - TSS region transcription start site region 35609
Tssr35610 3 127896271 to 127896337 66 - TSS region transcription start site region 35610
Tssr31615 3 127916164 to 127916169 5 + TSS region transcription start site region 31615
9830132P13Rik 3 127916172 to 127955220 39048 + lincRNA gene RIKEN cDNA 9830132P13 gene
Tssr31616 3 127930579 to 127930597 18 + TSS region transcription start site region 31616
Tssr31617 3 127930611 to 127930637 26 + TSS region transcription start site region 31617
Tssr31618 3 127930985 to 127930990 5 + TSS region transcription start site region 31618
Tssr31619 3 127950303 to 127950304 1 + TSS region transcription start site region 31619
Gm35667 3 127970921 to 127972878 1957 + lincRNA gene predicted gene, 35667
Gm10650 3 128038693 to 128040661 1968 + protein coding gene predicted gene 10650
D3Mit247 3 128110214 to 128110349 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 247a
D030025E07Rik 3 128117015 to 128231605 114590 - lncRNA gene RIKEN cDNA D030025E07 gene
Tssr1041 3 128258110 to 128258136 26 - TSS region transcription start site region 1041
Gm43656 3 128280658 to 128281091 433 - pseudogene predicted gene 43656
Bomb1 3 128339594 to 128339768 174 QTL bone marrow pre-B 1
D3Mit319 3 128339594 to 128339768 174 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 319
Tssr31620 3 128528691 to 128528694 3 + TSS region transcription start site region 31620
Gm22293 3 128540372 to 128540480 108 + snoRNA gene predicted gene, 22293
Tssr1042 3 128610938 to 128610951 13 + TSS region transcription start site region 1042
Tssr31621 3 128610954 to 128610963 9 + TSS region transcription start site region 31621
Tssr31622 3 128610970 to 128610995 25 + TSS region transcription start site region 31622