Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:126607740-127237751

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Camk2d 3 126596354 to 126846326 249972 + protein coding gene calcium/calmodulin-dependent protein kinase II, delta
Tssr35522 3 126611862 to 126611892 30 - TSS region transcription start site region 35522
Gm43010 3 126625880 to 126628757 2877 + unclassified gene predicted gene 43010
Gm43009 3 126644461 to 126648026 3565 + unclassified gene predicted gene 43009
Tssr31577 3 126653529 to 126653532 3 + TSS region transcription start site region 31577
Gm43006 3 126657722 to 126659323 1601 + unclassified gene predicted gene 43006
Gm43005 3 126662379 to 126663026 647 + unclassified gene predicted gene 43005
Gm15551 3 126667329 to 126669044 1715 - antisense lncRNA gene predicted gene 15551
Tssr35523 3 126668935 to 126668983 48 - TSS region transcription start site region 35523
Tssr35524 3 126669004 to 126669044 40 - TSS region transcription start site region 35524
Gm42515 3 126737497 to 126741079 3582 + unclassified gene predicted gene 42515
Gm42514 3 126746133 to 126747964 1831 + unclassified gene predicted gene 42514
Tssr35525 3 126746468 to 126746497 29 - TSS region transcription start site region 35525
Tssr31578 3 126746696 to 126746708 12 + TSS region transcription start site region 31578
Tssr31579 3 126780362 to 126780390 28 + TSS region transcription start site region 31579
Tssr31580 3 126780397 to 126780407 10 + TSS region transcription start site region 31580
Tssr31581 3 126780408 to 126780416 8 + TSS region transcription start site region 31581
Tssr31582 3 126803313 to 126803316 3 + TSS region transcription start site region 31582
Tssr31583 3 126810612 to 126810644 32 + TSS region transcription start site region 31583
Tssr31584 3 126830034 to 126830040 6 + TSS region transcription start site region 31584
Tssr35526 3 126831422 to 126831430 8 - TSS region transcription start site region 35526
Tssr35527 3 126831431 to 126831442 11 - TSS region transcription start site region 35527
Tssr35528 3 126831463 to 126831477 14 - TSS region transcription start site region 35528
Tssr31585 3 126844673 to 126844677 4 + TSS region transcription start site region 31585
Ank2 3 126921612 to 127499350 577738 - protein coding gene ankyrin 2, brain
Tssr35529 3 126921810 to 126921813 3 - TSS region transcription start site region 35529
Tssr35530 3 126922740 to 126922751 11 - TSS region transcription start site region 35530
Tssr35531 3 126922752 to 126922773 21 - TSS region transcription start site region 35531
Tssr35532 3 126922825 to 126922847 22 - TSS region transcription start site region 35532
Tssr35533 3 126922849 to 126922859 10 - TSS region transcription start site region 35533
Tssr35534 3 126922894 to 126922919 25 - TSS region transcription start site region 35534
Tssr35535 3 126922926 to 126922949 23 - TSS region transcription start site region 35535
Tssr35536 3 126922957 to 126922968 11 - TSS region transcription start site region 35536
Tssr35537 3 126923024 to 126923037 13 - TSS region transcription start site region 35537
Tssr35538 3 126936664 to 126936678 14 - TSS region transcription start site region 35538
Tssr35539 3 126942815 to 126942827 12 - TSS region transcription start site region 35539
A930036I15Rik 3 126966475 to 126967519 1044 - unclassified gene RIKEN cDNA A930036I15 gene
Tssr35540 3 126972695 to 126972700 5 - TSS region transcription start site region 35540
Gm43322 3 126974256 to 126975867 1611 - unclassified gene predicted gene 43322
Gm43765 3 126986808 to 126987700 892 - unclassified gene predicted gene 43765
Cpgi13786 3 126997825 to 126998036 211 CpG island CpG island 13786
Tssr35541 3 126997946 to 126997985 39 - TSS region transcription start site region 35541
Tssr1040 3 126997993 to 126998021 28 - TSS region transcription start site region 1040
Tssr35542 3 126998408 to 126998463 55 - TSS region transcription start site region 35542
Tssr35543 3 126998520 to 126998543 23 - TSS region transcription start site region 35543
Gm25501 3 127005369 to 127005500 131 + snoRNA gene predicted gene, 25501
Gm43750 3 127008309 to 127010801 2492 - unclassified gene predicted gene 43750
Tssr35544 3 127027553 to 127027585 32 - TSS region transcription start site region 35544
Tssr35545 3 127027663 to 127027675 12 - TSS region transcription start site region 35545
D3Mit348 3 127041233 to 127041356 123 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 348
Cdcs1 3 127041233 to 127041356 123 QTL cytokine deficiency colitis susceptibility 1
Gm43751 3 127048976 to 127052046 3070 - unclassified gene predicted gene 43751
Tssr35546 3 127063712 to 127063750 38 - TSS region transcription start site region 35546
Tssr35547 3 127124847 to 127124886 39 - TSS region transcription start site region 35547
Gm42974 3 127137837 to 127140490 2653 - unclassified gene predicted gene 42974
Tssr35548 3 127140448 to 127140452 4 - TSS region transcription start site region 35548
Gm16958 3 127161304 to 127168288 6984 + antisense lncRNA gene predicted gene, 16958
Tssr35549 3 127161922 to 127161934 12 - TSS region transcription start site region 35549
Cpgi13787 3 127162008 to 127162763 755 CpG island CpG island 13787
Tssr35550 3 127162046 to 127162093 47 - TSS region transcription start site region 35550
Tssr35551 3 127162143 to 127162174 31 - TSS region transcription start site region 35551
Tssr35552 3 127162195 to 127162259 64 - TSS region transcription start site region 35552
Tssr35553 3 127162328 to 127162360 32 - TSS region transcription start site region 35553
Tssr35554 3 127162365 to 127162385 20 - TSS region transcription start site region 35554
Tssr35555 3 127162399 to 127162416 17 - TSS region transcription start site region 35555
Tssr35556 3 127162542 to 127162580 38 - TSS region transcription start site region 35556
C230031I18Rik 3 127180276 to 127183973 3697 - unclassified gene RIKEN cDNA C230031I18 gene
Tssr35557 3 127194656 to 127194658 2 - TSS region transcription start site region 35557
Tssr35558 3 127204841 to 127204845 4 - TSS region transcription start site region 35558
Tssr35559 3 127225318 to 127225322 4 - TSS region transcription start site region 35559
Cpgi13788 3 127225743 to 127225992 249 CpG island CpG island 13788
Tssr35560 3 127225894 to 127225915 21 - TSS region transcription start site region 35560
Tssr35561 3 127225917 to 127225959 42 - TSS region transcription start site region 35561
Tssr35562 3 127226016 to 127226021 5 - TSS region transcription start site region 35562
Tssr35563 3 127226075 to 127226096 21 - TSS region transcription start site region 35563