Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:124921326-128271343

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270 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia5c 3 107469620 to 125522588 18052968 QTL collagen induced arthritis QTL 5c
Cfq3 3 122395162 to 127426367 5031205 QTL conditioned fear QTL 3
Gm42825 3 124839509 to 124936860 97351 + lincRNA gene predicted gene 42825
Gm9381 3 125042262 to 125043273 1011 - pseudogene predicted gene 9381
Gm42826 3 125216915 to 125219553 2638 - unclassified gene predicted gene 42826
Tssr31558 3 125404072 to 125404131 59 + TSS region transcription start site region 31558
Ndst4 3 125404076 to 125728351 324275 + protein coding gene N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
Tssr31559 3 125404325 to 125404340 15 + TSS region transcription start site region 31559
Gm35237 3 125520100 to 125535080 14980 - lncRNA gene predicted gene, 35237
D3Mit370 3 125522356 to 125522588 232 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 370
am3 3 125522368 to 136996870 11474502 heritable phenotypic marker absence of third molars
D3Mit13 3 125522368 to 125522587 219 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 13
Sle18 3 125522587 to 87301597 -38220990 QTL systematic lupus erythematosus susceptibility 18
Tssr31560 3 125587810 to 125587811 1 + TSS region transcription start site region 31560
Gm35186 3 125657551 to 125681294 23743 - lncRNA gene predicted gene, 35186
Tssr31561 3 125680979 to 125681033 54 + TSS region transcription start site region 31561
Ugt8a 3 125865271 to 125938619 73348 - protein coding gene UDP galactosyltransferase 8A
Gm40145 3 125896544 to 125900599 4055 + lncRNA gene predicted gene, 40145
Tssr35515 3 125935930 to 125935934 4 - TSS region transcription start site region 35515
Cpgi13783 3 125937570 to 125939276 1706 CpG island CpG island 13783
Tssr35516 3 125938484 to 125938496 12 - TSS region transcription start site region 35516
Tssr35517 3 125938497 to 125938517 20 - TSS region transcription start site region 35517
Tssr35518 3 125938522 to 125938536 14 - TSS region transcription start site region 35518
Tssr35519 3 125938537 to 125938605 68 - TSS region transcription start site region 35519
Tssr35520 3 125938606 to 125938617 11 - TSS region transcription start site region 35520
D3Ertd229e 3 125958200 to 125958447 247 DNA segment DNA segment, Chr 3, ERATO Doi 229, expressed
Tssr35521 3 125978639 to 125978650 11 - TSS region transcription start site region 35521
Tssr31562 3 126106691 to 126106710 19 + TSS region transcription start site region 31562
Gm40146 3 126106710 to 126183716 77006 + lncRNA gene predicted gene, 40146
Gm26275 3 126152456 to 126152723 267 - unclassified non-coding RNA gene predicted gene, 26275
Gm42827 3 126226327 to 126228357 2030 + lincRNA gene predicted gene 42827
Gm18916 3 126278030 to 126279275 1245 + pseudogene predicted gene, 18916
D3Mit159 3 126294151 to 126294299 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 159
Cpgi13784 3 126363685 to 126364291 606 CpG island CpG island 13784
Arsj 3 126363852 to 126440374 76522 + protein coding gene arylsulfatase J
Tssr31563 3 126363908 to 126363954 46 + TSS region transcription start site region 31563
Gm35408 3 126365553 to 126380842 15289 - lncRNA gene predicted gene, 35408
Gm35351 3 126386296 to 126407200 20904 - lncRNA gene predicted gene, 35351
Gm17225 3 126432883 to 126439269 6386 - antisense lncRNA gene predicted gene 17225
Gm43327 3 126441012 to 126445066 4054 + unclassified gene predicted gene 43327
Tssr31564 3 126447720 to 126447721 1 + TSS region transcription start site region 31564
Gm20568 3 126447743 to 126447950 207 + pseudogene predicted gene, 20568
Gm46823 3 126468347 to 126519928 51581 + lncRNA gene predicted gene, 46823
Tssr31565 3 126520499 to 126520506 7 + TSS region transcription start site region 31565
Cpgi13785 3 126596052 to 126598054 2002 CpG island CpG island 13785
Tssr31566 3 126596326 to 126596343 17 + TSS region transcription start site region 31566
Tssr31567 3 126596352 to 126596372 20 + TSS region transcription start site region 31567
Camk2d 3 126596354 to 126846326 249972 + protein coding gene calcium/calmodulin-dependent protein kinase II, delta
Tssr31568 3 126596408 to 126596419 11 + TSS region transcription start site region 31568
Tssr31569 3 126596813 to 126596854 41 + TSS region transcription start site region 31569
Tssr31570 3 126596961 to 126596986 25 + TSS region transcription start site region 31570
Tssr31571 3 126596993 to 126597038 45 + TSS region transcription start site region 31571
Tssr31572 3 126597102 to 126597113 11 + TSS region transcription start site region 31572
Tssr31573 3 126597238 to 126597254 16 + TSS region transcription start site region 31573
Tssr31574 3 126597299 to 126597413 114 + TSS region transcription start site region 31574
Tssr31575 3 126597415 to 126597435 20 + TSS region transcription start site region 31575
Gm43011 3 126600029 to 126604461 4432 + unclassified gene predicted gene 43011
Tssr31576 3 126607107 to 126607121 14 + TSS region transcription start site region 31576
Tssr35522 3 126611862 to 126611892 30 - TSS region transcription start site region 35522
Gm43010 3 126625880 to 126628757 2877 + unclassified gene predicted gene 43010
Gm43009 3 126644461 to 126648026 3565 + unclassified gene predicted gene 43009
Tssr31577 3 126653529 to 126653532 3 + TSS region transcription start site region 31577
Gm43006 3 126657722 to 126659323 1601 + unclassified gene predicted gene 43006
Gm43005 3 126662379 to 126663026 647 + unclassified gene predicted gene 43005
Gm15551 3 126667329 to 126669044 1715 - antisense lncRNA gene predicted gene 15551
Tssr35523 3 126668935 to 126668983 48 - TSS region transcription start site region 35523
Tssr35524 3 126669004 to 126669044 40 - TSS region transcription start site region 35524
Gm42515 3 126737497 to 126741079 3582 + unclassified gene predicted gene 42515
Gm42514 3 126746133 to 126747964 1831 + unclassified gene predicted gene 42514
Tssr35525 3 126746468 to 126746497 29 - TSS region transcription start site region 35525
Tssr31578 3 126746696 to 126746708 12 + TSS region transcription start site region 31578
Tssr31579 3 126780362 to 126780390 28 + TSS region transcription start site region 31579
Tssr31580 3 126780397 to 126780407 10 + TSS region transcription start site region 31580
Tssr31581 3 126780408 to 126780416 8 + TSS region transcription start site region 31581
Tssr31582 3 126803313 to 126803316 3 + TSS region transcription start site region 31582
Tssr31583 3 126810612 to 126810644 32 + TSS region transcription start site region 31583
Tssr31584 3 126830034 to 126830040 6 + TSS region transcription start site region 31584
Tssr35526 3 126831422 to 126831430 8 - TSS region transcription start site region 35526
Tssr35527 3 126831431 to 126831442 11 - TSS region transcription start site region 35527
Tssr35528 3 126831463 to 126831477 14 - TSS region transcription start site region 35528
Tssr31585 3 126844673 to 126844677 4 + TSS region transcription start site region 31585
Ank2 3 126921612 to 127499350 577738 - protein coding gene ankyrin 2, brain
Tssr35529 3 126921810 to 126921813 3 - TSS region transcription start site region 35529
Tssr35530 3 126922740 to 126922751 11 - TSS region transcription start site region 35530
Tssr35531 3 126922752 to 126922773 21 - TSS region transcription start site region 35531
Tssr35532 3 126922825 to 126922847 22 - TSS region transcription start site region 35532
Tssr35533 3 126922849 to 126922859 10 - TSS region transcription start site region 35533
Tssr35534 3 126922894 to 126922919 25 - TSS region transcription start site region 35534
Tssr35535 3 126922926 to 126922949 23 - TSS region transcription start site region 35535
Tssr35536 3 126922957 to 126922968 11 - TSS region transcription start site region 35536
Tssr35537 3 126923024 to 126923037 13 - TSS region transcription start site region 35537
Tssr35538 3 126936664 to 126936678 14 - TSS region transcription start site region 35538
Tssr35539 3 126942815 to 126942827 12 - TSS region transcription start site region 35539
A930036I15Rik 3 126966475 to 126967519 1044 - unclassified gene RIKEN cDNA A930036I15 gene
Tssr35540 3 126972695 to 126972700 5 - TSS region transcription start site region 35540
Gm43322 3 126974256 to 126975867 1611 - unclassified gene predicted gene 43322
Gm43765 3 126986808 to 126987700 892 - unclassified gene predicted gene 43765
Cpgi13786 3 126997825 to 126998036 211 CpG island CpG island 13786
Tssr35541 3 126997946 to 126997985 39 - TSS region transcription start site region 35541
Tssr1040 3 126997993 to 126998021 28 - TSS region transcription start site region 1040
Tssr35542 3 126998408 to 126998463 55 - TSS region transcription start site region 35542
Tssr35543 3 126998520 to 126998543 23 - TSS region transcription start site region 35543
Gm25501 3 127005369 to 127005500 131 + snoRNA gene predicted gene, 25501
Gm43750 3 127008309 to 127010801 2492 - unclassified gene predicted gene 43750
Tssr35544 3 127027553 to 127027585 32 - TSS region transcription start site region 35544
Tssr35545 3 127027663 to 127027675 12 - TSS region transcription start site region 35545
D3Mit348 3 127041233 to 127041356 123 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 348
Cdcs1 3 127041233 to 127041356 123 QTL cytokine deficiency colitis susceptibility 1
Gm43751 3 127048976 to 127052046 3070 - unclassified gene predicted gene 43751
Tssr35546 3 127063712 to 127063750 38 - TSS region transcription start site region 35546
Tssr35547 3 127124847 to 127124886 39 - TSS region transcription start site region 35547
Gm42974 3 127137837 to 127140490 2653 - unclassified gene predicted gene 42974
Tssr35548 3 127140448 to 127140452 4 - TSS region transcription start site region 35548
Gm16958 3 127161304 to 127168288 6984 + antisense lncRNA gene predicted gene, 16958
Tssr35549 3 127161922 to 127161934 12 - TSS region transcription start site region 35549
Cpgi13787 3 127162008 to 127162763 755 CpG island CpG island 13787
Tssr35550 3 127162046 to 127162093 47 - TSS region transcription start site region 35550
Tssr35551 3 127162143 to 127162174 31 - TSS region transcription start site region 35551
Tssr35552 3 127162195 to 127162259 64 - TSS region transcription start site region 35552
Tssr35553 3 127162328 to 127162360 32 - TSS region transcription start site region 35553
Tssr35554 3 127162365 to 127162385 20 - TSS region transcription start site region 35554
Tssr35555 3 127162399 to 127162416 17 - TSS region transcription start site region 35555
Tssr35556 3 127162542 to 127162580 38 - TSS region transcription start site region 35556
C230031I18Rik 3 127180276 to 127183973 3697 - unclassified gene RIKEN cDNA C230031I18 gene
Tssr35557 3 127194656 to 127194658 2 - TSS region transcription start site region 35557
Tssr35558 3 127204841 to 127204845 4 - TSS region transcription start site region 35558
Tssr35559 3 127225318 to 127225322 4 - TSS region transcription start site region 35559
Cpgi13788 3 127225743 to 127225992 249 CpG island CpG island 13788
Tssr35560 3 127225894 to 127225915 21 - TSS region transcription start site region 35560
Tssr35561 3 127225917 to 127225959 42 - TSS region transcription start site region 35561
Tssr35562 3 127226016 to 127226021 5 - TSS region transcription start site region 35562
Tssr35563 3 127226075 to 127226096 21 - TSS region transcription start site region 35563
Gm42973 3 127240576 to 127243775 3199 - unclassified gene predicted gene 42973
Tssr35564 3 127240661 to 127240678 17 - TSS region transcription start site region 35564
Tssr35565 3 127240772 to 127240788 16 - TSS region transcription start site region 35565
Tssr35566 3 127240790 to 127240798 8 - TSS region transcription start site region 35566
Gm42972 3 127266673 to 127272289 5616 - unclassified gene predicted gene 42972
Tssr35567 3 127282346 to 127282355 9 - TSS region transcription start site region 35567
Tssr35568 3 127282367 to 127282384 17 - TSS region transcription start site region 35568
Tssr35569 3 127282398 to 127282401 3 - TSS region transcription start site region 35569
Tssr35570 3 127282445 to 127282475 30 - TSS region transcription start site region 35570
Gm42971 3 127283481 to 127285559 2078 - unclassified gene predicted gene 42971
Gm42970 3 127298322 to 127299673 1351 - unclassified gene predicted gene 42970
Cpgi13789 3 127309479 to 127309804 325 CpG island CpG island 13789
Gm42969 3 127390076 to 127393706 3630 - unclassified gene predicted gene 42969
D3Mit253 3 127393081 to 127393186 105 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 253
Gm46824 3 127393905 to 127404040 10135 - lncRNA gene predicted gene, 46824
Cpgi13790 3 127408687 to 127408915 228 CpG island CpG island 13790
Tssr35571 3 127408880 to 127408887 7 - TSS region transcription start site region 35571
Tssr35572 3 127408937 to 127408981 44 - TSS region transcription start site region 35572
Tssr35573 3 127408986 to 127409008 22 - TSS region transcription start site region 35573
Tssr35574 3 127409014 to 127409043 29 - TSS region transcription start site region 35574
Tssr35575 3 127409044 to 127409064 20 - TSS region transcription start site region 35575
Gm35535 3 127466244 to 127470787 4543 - lncRNA gene predicted gene, 35535
Gm43355 3 127479435 to 127481427 1992 - pseudogene predicted gene 43355
Gm42525 3 127480179 to 127481190 1011 - pseudogene predicted gene 42525
Gm44494 3 127481120 to 127481248 128 + miRNA gene predicted gene, 44494
Cpgi13791 3 127498332 to 127499409 1077 CpG island CpG island 13791
Tssr35576 3 127498986 to 127499038 52 - TSS region transcription start site region 35576
Tssr35577 3 127499049 to 127499071 22 - TSS region transcription start site region 35577
Tssr35578 3 127499076 to 127499093 17 - TSS region transcription start site region 35578
Tssr35579 3 127499095 to 127499137 42 - TSS region transcription start site region 35579
Tssr31586 3 127512811 to 127512817 6 + TSS region transcription start site region 31586
Gm43354 3 127512900 to 127513245 345 + pseudogene predicted gene 43354
Tssr35580 3 127522373 to 127522399 26 - TSS region transcription start site region 35580
Larp7 3 127536714 to 127553349 16635 - protein coding gene La ribonucleoprotein domain family, member 7
Tssr35581 3 127541424 to 127541464 40 - TSS region transcription start site region 35581
Tssr35582 3 127541481 to 127541495 14 - TSS region transcription start site region 35582
Tssr31587 3 127545083 to 127545098 15 + TSS region transcription start site region 31587
Mirc20 3 127545228 to 127545807 579 complex/cluster/region microRNA cluster 20, including Mir302b through Mir367
Mir302b 3 127545228 to 127545301 73 + miRNA gene microRNA 302b
Mir302c 3 127545363 to 127545430 67 + miRNA gene microRNA 302c
Mir302a 3 127545496 to 127545564 68 + miRNA gene microRNA 302a
Mir302d 3 127545624 to 127545689 65 + miRNA gene microRNA 302d
Mir367 3 127545733 to 127545807 74 + miRNA gene microRNA 367
Cpgi13792 3 127552818 to 127553855 1037 CpG island CpG island 13792
Tssr35583 3 127553019 to 127553033 14 - TSS region transcription start site region 35583
Tssr35584 3 127553210 to 127553225 15 - TSS region transcription start site region 35584
Tssr35585 3 127553233 to 127553364 131 - TSS region transcription start site region 35585
Tssr31588 3 127553462 to 127553512 50 + TSS region transcription start site region 31588
Zgrf1 3 127553489 to 127618023 64534 + protein coding gene zinc finger, GRF-type containing 1
Gm43729 3 127556228 to 127557561 1333 - antisense lncRNA gene predicted gene 43729
Cpgi13793 3 127625264 to 127625709 445 CpG island CpG island 13793
Gm40147 3 127626162 to 127628117 1955 - lncRNA gene predicted gene, 40147
Cpgi13794 3 127626207 to 127626372 165 CpG island CpG island 13794
Cpgi13795 3 127628359 to 127628596 237 CpG island CpG island 13795
Cpgi13796 3 127632276 to 127634817 2541 CpG island CpG island 13796
Tssr31589 3 127632738 to 127632765 27 + TSS region transcription start site region 31589
Tssr31590 3 127632798 to 127632810 12 + TSS region transcription start site region 31590
Tssr31591 3 127633134 to 127633140 6 + TSS region transcription start site region 31591
Neurog2 3 127633145 to 127635631 2486 + protein coding gene neurogenin 2
Tssr31592 3 127633197 to 127633212 15 + TSS region transcription start site region 31592
Cpgi13797 3 127639776 to 127640238 462 CpG island CpG island 13797
Alpk1 3 127670310 to 127780527 110217 - protein coding gene alpha-kinase 1
Tssr35586 3 127688538 to 127688552 14 - TSS region transcription start site region 35586
Tssr35587 3 127690748 to 127690783 35 - TSS region transcription start site region 35587
Tssr35588 3 127691291 to 127691304 13 - TSS region transcription start site region 35588
Gm16238 3 127691935 to 127692520 585 - pseudogene predicted gene 16238
Tssr35589 3 127692546 to 127692548 2 - TSS region transcription start site region 35589
Cpgi13798 3 127695406 to 127695783 377 CpG island CpG island 13798