Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:123970100-127085080

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia5c 3 107469620 to 125522588 18052968 QTL collagen induced arthritis QTL 5c
Emrq3 3 123433893 to 123971849 537956 QTL emotional reactivity QTL 3
D3Dcr16 3 123971711 to 123971847 136 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 16
D3Mit199 3 123971716 to 123971849 133 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 199
Gm15399 3 123984097 to 123985104 1007 - pseudogene predicted gene 15399
Gm40144 3 124007517 to 124028971 21454 + lncRNA gene predicted gene, 40144
Gm43731 3 124246237 to 124318984 72747 + lincRNA gene predicted gene 43731
Gm9372 3 124292076 to 124292505 429 + pseudogene predicted gene 9372
Tssr35510 3 124300737 to 124300746 9 - TSS region transcription start site region 35510
Gm42824 3 124304184 to 124304430 246 - pseudogene predicted gene 42824
Cpgi13782 3 124320783 to 124321559 776 CpG island CpG island 13782
Tssr31555 3 124321031 to 124321113 82 + TSS region transcription start site region 31555
Tram1l1 3 124321037 to 124323260 2223 + protein coding gene translocation associated membrane protein 1-like 1
Tssr31556 3 124321142 to 124321153 11 + TSS region transcription start site region 31556
Tssr31557 3 124385667 to 124385680 13 + TSS region transcription start site region 31557
Gm4617 3 124385667 to 124385997 330 + pseudogene predicted pseudogene 4617
4921527H02Rik 3 124398086 to 124399758 1672 - unclassified gene RIKEN cDNA 4921527H02 gene
1700006A11Rik 3 124400984 to 124426028 25044 - protein coding gene RIKEN cDNA 1700006A11 gene
Gm22575 3 124410655 to 124410764 109 + snRNA gene predicted gene, 22575
Gm42823 3 124420429 to 124422125 1696 + antisense lncRNA gene predicted gene 42823
Tssr35511 3 124425989 to 124425996 7 - TSS region transcription start site region 35511
Tssr35512 3 124426003 to 124426012 9 - TSS region transcription start site region 35512
Tssr35513 3 124426026 to 124426031 5 - TSS region transcription start site region 35513
Gm22900 3 124501574 to 124501703 129 + snoRNA gene predicted gene, 22900
1700003H04Rik 3 124565891 to 124581091 15200 - protein coding gene RIKEN cDNA 1700003H04 gene
Tssr35514 3 124581076 to 124581097 21 - TSS region transcription start site region 35514
Gm9379 3 124588528 to 124589147 619 - pseudogene predicted gene 9379
D3Mit81 3 124771462 to 124771591 129 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 81
Gm42825 3 124839509 to 124936860 97351 + lincRNA gene predicted gene 42825
Gm23673 3 124848589 to 124848886 297 + unclassified non-coding RNA gene predicted gene, 23673
Gm9381 3 125042262 to 125043273 1011 - pseudogene predicted gene 9381
Gm42826 3 125216915 to 125219553 2638 - unclassified gene predicted gene 42826
Tssr31558 3 125404072 to 125404131 59 + TSS region transcription start site region 31558
Ndst4 3 125404076 to 125728351 324275 + protein coding gene N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
Tssr31559 3 125404325 to 125404340 15 + TSS region transcription start site region 31559
Gm35237 3 125520100 to 125535080 14980 - lncRNA gene predicted gene, 35237
D3Mit370 3 125522356 to 125522588 232 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 370
am3 3 125522368 to 136996870 11474502 heritable phenotypic marker absence of third molars
D3Mit13 3 125522368 to 125522587 219 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 13
Sle18 3 125522587 to 87301597 -38220990 QTL systematic lupus erythematosus susceptibility 18
Tssr31560 3 125587810 to 125587811 1 + TSS region transcription start site region 31560
Gm35186 3 125657551 to 125681294 23743 - lncRNA gene predicted gene, 35186
Tssr31561 3 125680979 to 125681033 54 + TSS region transcription start site region 31561
Ugt8a 3 125865271 to 125938619 73348 - protein coding gene UDP galactosyltransferase 8A
Gm40145 3 125896544 to 125900599 4055 + lncRNA gene predicted gene, 40145
Tssr35515 3 125935930 to 125935934 4 - TSS region transcription start site region 35515
Cpgi13783 3 125937570 to 125939276 1706 CpG island CpG island 13783
Tssr35516 3 125938484 to 125938496 12 - TSS region transcription start site region 35516
Tssr35517 3 125938497 to 125938517 20 - TSS region transcription start site region 35517
Tssr35518 3 125938522 to 125938536 14 - TSS region transcription start site region 35518
Tssr35519 3 125938537 to 125938605 68 - TSS region transcription start site region 35519
Tssr35520 3 125938606 to 125938617 11 - TSS region transcription start site region 35520
D3Ertd229e 3 125958200 to 125958447 247 DNA segment DNA segment, Chr 3, ERATO Doi 229, expressed
Tssr35521 3 125978639 to 125978650 11 - TSS region transcription start site region 35521
Tssr31562 3 126106691 to 126106710 19 + TSS region transcription start site region 31562
Gm40146 3 126106710 to 126183716 77006 + lncRNA gene predicted gene, 40146
Gm26275 3 126152456 to 126152723 267 - unclassified non-coding RNA gene predicted gene, 26275
Gm42827 3 126226327 to 126228357 2030 + lincRNA gene predicted gene 42827
Gm18916 3 126278030 to 126279275 1245 + pseudogene predicted gene, 18916
D3Mit159 3 126294151 to 126294299 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 159
Cpgi13784 3 126363685 to 126364291 606 CpG island CpG island 13784
Arsj 3 126363852 to 126440374 76522 + protein coding gene arylsulfatase J
Tssr31563 3 126363908 to 126363954 46 + TSS region transcription start site region 31563
Gm35408 3 126365553 to 126380842 15289 - lncRNA gene predicted gene, 35408
Gm35351 3 126386296 to 126407200 20904 - lncRNA gene predicted gene, 35351
Gm17225 3 126432883 to 126439269 6386 - antisense lncRNA gene predicted gene 17225
Gm43327 3 126441012 to 126445066 4054 + unclassified gene predicted gene 43327
Tssr31564 3 126447720 to 126447721 1 + TSS region transcription start site region 31564
Gm20568 3 126447743 to 126447950 207 + pseudogene predicted gene, 20568
Gm46823 3 126468347 to 126519928 51581 + lncRNA gene predicted gene, 46823
Tssr31565 3 126520499 to 126520506 7 + TSS region transcription start site region 31565
Cpgi13785 3 126596052 to 126598054 2002 CpG island CpG island 13785
Tssr31566 3 126596326 to 126596343 17 + TSS region transcription start site region 31566
Tssr31567 3 126596352 to 126596372 20 + TSS region transcription start site region 31567
Camk2d 3 126596354 to 126846326 249972 + protein coding gene calcium/calmodulin-dependent protein kinase II, delta
Tssr31568 3 126596408 to 126596419 11 + TSS region transcription start site region 31568
Tssr31569 3 126596813 to 126596854 41 + TSS region transcription start site region 31569
Tssr31570 3 126596961 to 126596986 25 + TSS region transcription start site region 31570
Tssr31571 3 126596993 to 126597038 45 + TSS region transcription start site region 31571
Tssr31572 3 126597102 to 126597113 11 + TSS region transcription start site region 31572
Tssr31573 3 126597238 to 126597254 16 + TSS region transcription start site region 31573
Tssr31574 3 126597299 to 126597413 114 + TSS region transcription start site region 31574
Tssr31575 3 126597415 to 126597435 20 + TSS region transcription start site region 31575
Gm43011 3 126600029 to 126604461 4432 + unclassified gene predicted gene 43011
Tssr31576 3 126607107 to 126607121 14 + TSS region transcription start site region 31576
Tssr35522 3 126611862 to 126611892 30 - TSS region transcription start site region 35522
Gm43010 3 126625880 to 126628757 2877 + unclassified gene predicted gene 43010
Gm43009 3 126644461 to 126648026 3565 + unclassified gene predicted gene 43009
Tssr31577 3 126653529 to 126653532 3 + TSS region transcription start site region 31577
Gm43006 3 126657722 to 126659323 1601 + unclassified gene predicted gene 43006
Gm43005 3 126662379 to 126663026 647 + unclassified gene predicted gene 43005
Gm15551 3 126667329 to 126669044 1715 - antisense lncRNA gene predicted gene 15551
Tssr35523 3 126668935 to 126668983 48 - TSS region transcription start site region 35523
Tssr35524 3 126669004 to 126669044 40 - TSS region transcription start site region 35524
Gm42515 3 126737497 to 126741079 3582 + unclassified gene predicted gene 42515
Gm42514 3 126746133 to 126747964 1831 + unclassified gene predicted gene 42514
Tssr35525 3 126746468 to 126746497 29 - TSS region transcription start site region 35525
Tssr31578 3 126746696 to 126746708 12 + TSS region transcription start site region 31578
Tssr31579 3 126780362 to 126780390 28 + TSS region transcription start site region 31579
Tssr31580 3 126780397 to 126780407 10 + TSS region transcription start site region 31580
Tssr31581 3 126780408 to 126780416 8 + TSS region transcription start site region 31581
Tssr31582 3 126803313 to 126803316 3 + TSS region transcription start site region 31582
Tssr31583 3 126810612 to 126810644 32 + TSS region transcription start site region 31583
Tssr31584 3 126830034 to 126830040 6 + TSS region transcription start site region 31584
Tssr35526 3 126831422 to 126831430 8 - TSS region transcription start site region 35526
Tssr35527 3 126831431 to 126831442 11 - TSS region transcription start site region 35527
Tssr35528 3 126831463 to 126831477 14 - TSS region transcription start site region 35528
Tssr31585 3 126844673 to 126844677 4 + TSS region transcription start site region 31585
Ank2 3 126921612 to 127499350 577738 - protein coding gene ankyrin 2, brain
Tssr35529 3 126921810 to 126921813 3 - TSS region transcription start site region 35529
Tssr35530 3 126922740 to 126922751 11 - TSS region transcription start site region 35530
Tssr35531 3 126922752 to 126922773 21 - TSS region transcription start site region 35531
Tssr35532 3 126922825 to 126922847 22 - TSS region transcription start site region 35532
Tssr35533 3 126922849 to 126922859 10 - TSS region transcription start site region 35533
Tssr35534 3 126922894 to 126922919 25 - TSS region transcription start site region 35534
Tssr35535 3 126922926 to 126922949 23 - TSS region transcription start site region 35535
Tssr35536 3 126922957 to 126922968 11 - TSS region transcription start site region 35536
Tssr35537 3 126923024 to 126923037 13 - TSS region transcription start site region 35537
Tssr35538 3 126936664 to 126936678 14 - TSS region transcription start site region 35538
Tssr35539 3 126942815 to 126942827 12 - TSS region transcription start site region 35539
A930036I15Rik 3 126966475 to 126967519 1044 - unclassified gene RIKEN cDNA A930036I15 gene
Tssr35540 3 126972695 to 126972700 5 - TSS region transcription start site region 35540
Gm43322 3 126974256 to 126975867 1611 - unclassified gene predicted gene 43322
Gm43765 3 126986808 to 126987700 892 - unclassified gene predicted gene 43765
Cpgi13786 3 126997825 to 126998036 211 CpG island CpG island 13786
Tssr35541 3 126997946 to 126997985 39 - TSS region transcription start site region 35541
Tssr1040 3 126997993 to 126998021 28 - TSS region transcription start site region 1040
Tssr35542 3 126998408 to 126998463 55 - TSS region transcription start site region 35542
Tssr35543 3 126998520 to 126998543 23 - TSS region transcription start site region 35543
Gm25501 3 127005369 to 127005500 131 + snoRNA gene predicted gene, 25501
Gm43750 3 127008309 to 127010801 2492 - unclassified gene predicted gene 43750
Tssr35544 3 127027553 to 127027585 32 - TSS region transcription start site region 35544
Tssr35545 3 127027663 to 127027675 12 - TSS region transcription start site region 35545
Cdcs1 3 127041233 to 127041356 123 QTL cytokine deficiency colitis susceptibility 1
D3Mit348 3 127041233 to 127041356 123 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 348
Gm43751 3 127048976 to 127052046 3070 - unclassified gene predicted gene 43751
Tssr35546 3 127063712 to 127063750 38 - TSS region transcription start site region 35546