Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:123086134-123386157

39 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Synpo2	3	123076519 to 123236149	159630	-	protein coding gene	synaptopodin 2
Tssr35484	3	123105282 to 123105285	3	-	TSS region	transcription start site region 35484
Tssr35485	3	123112890 to 123112904	14	-	TSS region	transcription start site region 35485
Tssr35486	3	123113567 to 123113578	11	-	TSS region	transcription start site region 35486
Tssr35487	3	123113761 to 123113791	30	-	TSS region	transcription start site region 35487
Tssr35488	3	123114238 to 123114255	17	-	TSS region	transcription start site region 35488
Tssr35489	3	123114346 to 123114383	37	-	TSS region	transcription start site region 35489
Tssr35490	3	123114473 to 123114495	22	-	TSS region	transcription start site region 35490
Cpgi13774	3	123116943 to 123117113	170		CpG island	CpG island 13774
Tssr35491	3	123116985 to 123116996	11	-	TSS region	transcription start site region 35491
Tssr35492	3	123117013 to 123117051	38	-	TSS region	transcription start site region 35492
Tssr35493	3	123117164 to 123117169	5	-	TSS region	transcription start site region 35493
Tssr35494	3	123117195 to 123117198	3	-	TSS region	transcription start site region 35494
Tssr35495	3	123117257 to 123117266	9	-	TSS region	transcription start site region 35495
Gm43744	3	123142288 to 123142975	687	+	pseudogene	predicted gene 43744
Gm43287	3	123163873 to 123164472	599	-	unclassified gene	predicted gene 43287
Gm43288	3	123190135 to 123192762	2627	-	unclassified gene	predicted gene 43288
Gm43283	3	123209400 to 123211947	2547	-	unclassified gene	predicted gene 43283
Tssr35496	3	123225133 to 123225137	4	-	TSS region	transcription start site region 35496
Cpgi13775	3	123235992 to 123236352	360		CpG island	CpG island 13775
Tssr35497	3	123236111 to 123236122	11	-	TSS region	transcription start site region 35497
Tssr35498	3	123236134 to 123236157	23	-	TSS region	transcription start site region 35498
Tssr31540	3	123264776 to 123264787	11	+	TSS region	transcription start site region 31540
Tssr31541	3	123264791 to 123264818	27	+	TSS region	transcription start site region 31541
Cpgi13776	3	123266945 to 123268212	1267		CpG island	CpG island 13776
Tssr31542	3	123267181 to 123267202	21	+	TSS region	transcription start site region 31542
Tssr31543	3	123267208 to 123267221	13	+	TSS region	transcription start site region 31543
Tssr31544	3	123267445 to 123267500	55	+	TSS region	transcription start site region 31544
Sec24d	3	123267496 to 123365641	98145	+	protein coding gene	Sec24 related gene family, member D (S. cerevisiae)
Tssr31545	3	123269692 to 123269705	13	+	TSS region	transcription start site region 31545
Tssr31546	3	123293683 to 123293709	26	+	TSS region	transcription start site region 31546
Tssr31547	3	123293758 to 123293806	48	+	TSS region	transcription start site region 31547
Gm40142	3	123321157 to 123326166	5009	-	lncRNA gene	predicted gene, 40142
Tssr31548	3	123355553 to 123355586	33	+	TSS region	transcription start site region 31548
Mettl14	3	123368295 to 123385990	17695	-	protein coding gene	methyltransferase like 14
Tssr35499	3	123385668 to 123385672	4	-	TSS region	transcription start site region 35499
Cpgi13777	3	123385726 to 123386068	342		CpG island	CpG island 13777
Tssr35500	3	123385925 to 123385993	68	-	TSS region	transcription start site region 35500
Tssr35501	3	123385994 to 123386010	16	-	TSS region	transcription start site region 35501