Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:122815667-125955997

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia5c 3 107469620 to 125522588 18052968 QTL collagen induced arthritis QTL 5c
Pde5a 3 122729158 to 122859374 130216 + protein coding gene phosphodiesterase 5A, cGMP-specific
Gm34577 3 122812525 to 122850453 37928 - lncRNA gene predicted gene, 34577
Tssr31523 3 122834349 to 122834359 10 + TSS region transcription start site region 31523
Tssr31524 3 122834495 to 122834503 8 + TSS region transcription start site region 31524
Tssr31525 3 122834560 to 122834584 24 + TSS region transcription start site region 31525
Tssr31526 3 122834754 to 122834771 17 + TSS region transcription start site region 31526
Tssr31527 3 122834781 to 122834798 17 + TSS region transcription start site region 31527
Tssr31528 3 122856426 to 122856440 14 + TSS region transcription start site region 31528
Tssr31529 3 122860269 to 122860270 1 + TSS region transcription start site region 31529
Gm9364 3 122861913 to 122862372 459 + pseudogene predicted gene 9364
Tssr35469 3 122871573 to 122871582 9 - TSS region transcription start site region 35469
Tssr35470 3 122871622 to 122871649 27 - TSS region transcription start site region 35470
4933405D12Rik 3 122882592 to 122924116 41524 - antisense lncRNA gene RIKEN cDNA 4933405D12 gene
Tssr31530 3 122885278 to 122885286 8 + TSS region transcription start site region 31530
Fabp2 3 122895072 to 122899506 4434 + protein coding gene fatty acid binding protein 2, intestinal
Tssr31531 3 122895369 to 122895384 15 + TSS region transcription start site region 31531
Tssr31532 3 122896733 to 122896773 40 + TSS region transcription start site region 31532
D3Mit108.1 3 122898686 to 122898809 123 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 108.1
D3Mit108 3 122898771 to 122899085 314 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 108
Tssr31533 3 122899337 to 122899383 46 + TSS region transcription start site region 31533
Tssr31534 3 122899443 to 122899459 16 + TSS region transcription start site region 31534
Tssr35471 3 122899500 to 122899505 5 - TSS region transcription start site region 35471
Gm10959 3 122913070 to 122919360 6290 - protein coding gene predicted gene 10959
Cpgi13772 3 122923996 to 122924514 518 CpG island CpG island 13772
Tssr35472 3 122924103 to 122924145 42 - TSS region transcription start site region 35472
Tssr31535 3 122924353 to 122924402 49 + TSS region transcription start site region 31535
1810037I17Rik 3 122924397 to 122926194 1797 + protein coding gene RIKEN cDNA 1810037I17 gene
Tssr31536 3 122924420 to 122924459 39 + TSS region transcription start site region 31536
Usp53 3 122931486 to 122984447 52961 - protein coding gene ubiquitin specific peptidase 53
Cpgi13773 3 122983860 to 122985092 1232 CpG island CpG island 13773
Tssr35473 3 122984272 to 122984296 24 - TSS region transcription start site region 35473
Tssr35474 3 122984378 to 122984396 18 - TSS region transcription start site region 35474
Tssr35475 3 122984404 to 122984512 108 - TSS region transcription start site region 35475
Tssr31537 3 122984693 to 122984722 29 + TSS region transcription start site region 31537
Gm43285 3 122995411 to 122999002 3591 + unclassified gene predicted gene 43285
Myoz2 3 123006206 to 123035003 28797 - protein coding gene myozenin 2
Gm22066 3 123015259 to 123015368 109 - miRNA gene predicted gene, 22066
Tssr31538 3 123016551 to 123016578 27 + TSS region transcription start site region 31538
Tssr35476 3 123024852 to 123024856 4 - TSS region transcription start site region 35476
Tssr35477 3 123026139 to 123026150 11 - TSS region transcription start site region 35477
Tssr35478 3 123026202 to 123026215 13 - TSS region transcription start site region 35478
Tssr35479 3 123033007 to 123033015 8 - TSS region transcription start site region 35479
Tssr35480 3 123034884 to 123034895 11 - TSS region transcription start site region 35480
Tssr35481 3 123034943 to 123034995 52 - TSS region transcription start site region 35481
Tssr35482 3 123041051 to 123041053 2 - TSS region transcription start site region 35482
Gm43286 3 123043312 to 123043735 423 - pseudogene predicted gene 43286
Synpo2 3 123076519 to 123236149 159630 - protein coding gene synaptopodin 2
Tssr31539 3 123085673 to 123085678 5 + TSS region transcription start site region 31539
Tssr35483 3 123085926 to 123085947 21 - TSS region transcription start site region 35483
Tssr35484 3 123105282 to 123105285 3 - TSS region transcription start site region 35484
Tssr35485 3 123112890 to 123112904 14 - TSS region transcription start site region 35485
Tssr35486 3 123113567 to 123113578 11 - TSS region transcription start site region 35486
Tssr35487 3 123113761 to 123113791 30 - TSS region transcription start site region 35487
Tssr35488 3 123114238 to 123114255 17 - TSS region transcription start site region 35488
Tssr35489 3 123114346 to 123114383 37 - TSS region transcription start site region 35489
Tssr35490 3 123114473 to 123114495 22 - TSS region transcription start site region 35490
Cpgi13774 3 123116943 to 123117113 170 CpG island CpG island 13774
Tssr35491 3 123116985 to 123116996 11 - TSS region transcription start site region 35491
Tssr35492 3 123117013 to 123117051 38 - TSS region transcription start site region 35492
Tssr35493 3 123117164 to 123117169 5 - TSS region transcription start site region 35493
Tssr35494 3 123117195 to 123117198 3 - TSS region transcription start site region 35494
Tssr35495 3 123117257 to 123117266 9 - TSS region transcription start site region 35495
Gm43744 3 123142288 to 123142975 687 + pseudogene predicted gene 43744
Gm43287 3 123163873 to 123164472 599 - unclassified gene predicted gene 43287
Gm43288 3 123190135 to 123192762 2627 - unclassified gene predicted gene 43288
Gm43283 3 123209400 to 123211947 2547 - unclassified gene predicted gene 43283
Tssr35496 3 123225133 to 123225137 4 - TSS region transcription start site region 35496
Cpgi13775 3 123235992 to 123236352 360 CpG island CpG island 13775
Tssr35497 3 123236111 to 123236122 11 - TSS region transcription start site region 35497
Tssr35498 3 123236134 to 123236157 23 - TSS region transcription start site region 35498
Tssr31540 3 123264776 to 123264787 11 + TSS region transcription start site region 31540
Tssr31541 3 123264791 to 123264818 27 + TSS region transcription start site region 31541
Cpgi13776 3 123266945 to 123268212 1267 CpG island CpG island 13776
Tssr31542 3 123267181 to 123267202 21 + TSS region transcription start site region 31542
Tssr31543 3 123267208 to 123267221 13 + TSS region transcription start site region 31543
Tssr31544 3 123267445 to 123267500 55 + TSS region transcription start site region 31544
Sec24d 3 123267496 to 123365641 98145 + protein coding gene Sec24 related gene family, member D (S. cerevisiae)
Tssr31545 3 123269692 to 123269705 13 + TSS region transcription start site region 31545
Tssr31546 3 123293683 to 123293709 26 + TSS region transcription start site region 31546
Tssr31547 3 123293758 to 123293806 48 + TSS region transcription start site region 31547
Gm40142 3 123321157 to 123326166 5009 - lncRNA gene predicted gene, 40142
Tssr31548 3 123355553 to 123355586 33 + TSS region transcription start site region 31548
Mettl14 3 123368295 to 123385990 17695 - protein coding gene methyltransferase like 14
Tssr35499 3 123385668 to 123385672 4 - TSS region transcription start site region 35499
Cpgi13777 3 123385726 to 123386068 342 CpG island CpG island 13777
Tssr35500 3 123385925 to 123385993 68 - TSS region transcription start site region 35500
Tssr35501 3 123385994 to 123386010 16 - TSS region transcription start site region 35501
Gm22713 3 123391114 to 123391243 129 - snRNA gene predicted gene, 22713
Tssr31549 3 123429801 to 123429813 12 + TSS region transcription start site region 31549
D3Mit216 3 123433893 to 123434014 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 216
Emrq3 3 123433893 to 123971849 537956 QTL emotional reactivity QTL 3
Gm40143 3 123434215 to 123437856 3641 + lncRNA gene predicted gene, 40143
Cpgi13778 3 123442821 to 123443237 416 CpG island CpG island 13778
Gm35065 3 123444328 to 123447447 3119 - antisense lncRNA gene predicted gene, 35065
Cpgi13779 3 123446620 to 123447805 1185 CpG island CpG island 13779
Prss12 3 123446913 to 123506597 59684 + protein coding gene protease, serine 12 neurotrypsin (motopsin)
Tssr31550 3 123447118 to 123447155 37 + TSS region transcription start site region 31550
Gm43590 3 123471970 to 123472356 386 + unclassified gene predicted gene 43590
Snhg8 3 123507552 to 123508336 784 - lncRNA gene small nucleolar RNA host gene 8
Snora24 3 123507937 to 123508066 129 - snoRNA gene small nucleolar RNA, H/ACA box 24
Cpgi13780 3 123507938 to 123508958 1020 CpG island CpG island 13780
Tssr35502 3 123508330 to 123508341 11 - TSS region transcription start site region 35502
Tssr31551 3 123508550 to 123508568 18 + TSS region transcription start site region 31551
Tssr31552 3 123508588 to 123508615 27 + TSS region transcription start site region 31552
Tssr35503 3 123508915 to 123508929 14 - TSS region transcription start site region 35503
Gm9369 3 123509942 to 123510674 732 - pseudogene predicted pseudogene 9369
Ndst3 3 123526166 to 123690853 164687 - protein coding gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
D3Mit318 3 123631647 to 123631794 147 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 318
Tssr35504 3 123672380 to 123672400 20 - TSS region transcription start site region 35504
Gm42510 3 123685715 to 123687972 2257 - unclassified gene predicted gene 42510
Tssr35505 3 123688685 to 123688686 1 - TSS region transcription start site region 35505
Tssr35506 3 123690123 to 123690176 53 - TSS region transcription start site region 35506
Cpgi13781 3 123690620 to 123691299 679 CpG island CpG island 13781
Tssr35507 3 123690741 to 123690800 59 - TSS region transcription start site region 35507
Tssr35508 3 123690806 to 123690847 41 - TSS region transcription start site region 35508
Tssr35509 3 123690850 to 123690883 33 - TSS region transcription start site region 35509
Tssr31553 3 123691014 to 123691031 17 + TSS region transcription start site region 31553
Gm24456 3 123743297 to 123743403 106 - snRNA gene predicted gene, 24456
Tssr31554 3 123761249 to 123761299 50 + TSS region transcription start site region 31554
Gm15400 3 123761327 to 123761927 600 + pseudogene predicted gene 15400
n-TEctc1 3 123899187 to 123899258 71 - tRNA gene nuclear encoded tRNA glutamic acid 1 (anticodon CTC)
D3Dcr16 3 123971711 to 123971847 136 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 16
D3Mit199 3 123971716 to 123971849 133 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 199
Gm15399 3 123984097 to 123985104 1007 - pseudogene predicted gene 15399
Gm40144 3 124007517 to 124028971 21454 + lncRNA gene predicted gene, 40144
Gm43731 3 124246237 to 124318984 72747 + lincRNA gene predicted gene 43731
Gm9372 3 124292076 to 124292505 429 + pseudogene predicted gene 9372
Tssr35510 3 124300737 to 124300746 9 - TSS region transcription start site region 35510
Gm42824 3 124304184 to 124304430 246 - pseudogene predicted gene 42824
Cpgi13782 3 124320783 to 124321559 776 CpG island CpG island 13782
Tssr31555 3 124321031 to 124321113 82 + TSS region transcription start site region 31555
Tram1l1 3 124321037 to 124323260 2223 + protein coding gene translocation associated membrane protein 1-like 1
Tssr31556 3 124321142 to 124321153 11 + TSS region transcription start site region 31556
Tssr31557 3 124385667 to 124385680 13 + TSS region transcription start site region 31557
Gm4617 3 124385667 to 124385997 330 + pseudogene predicted pseudogene 4617
4921527H02Rik 3 124398086 to 124399758 1672 - unclassified gene RIKEN cDNA 4921527H02 gene
1700006A11Rik 3 124400984 to 124426028 25044 - protein coding gene RIKEN cDNA 1700006A11 gene
Gm22575 3 124410655 to 124410764 109 + snRNA gene predicted gene, 22575
Gm42823 3 124420429 to 124422125 1696 + antisense lncRNA gene predicted gene 42823
Tssr35511 3 124425989 to 124425996 7 - TSS region transcription start site region 35511
Tssr35512 3 124426003 to 124426012 9 - TSS region transcription start site region 35512
Tssr35513 3 124426026 to 124426031 5 - TSS region transcription start site region 35513
Gm22900 3 124501574 to 124501703 129 + snoRNA gene predicted gene, 22900
1700003H04Rik 3 124565891 to 124581091 15200 - protein coding gene RIKEN cDNA 1700003H04 gene
Tssr35514 3 124581076 to 124581097 21 - TSS region transcription start site region 35514
Gm9379 3 124588528 to 124589147 619 - pseudogene predicted gene 9379
D3Mit81 3 124771462 to 124771591 129 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 81
Gm42825 3 124839509 to 124936860 97351 + lincRNA gene predicted gene 42825
Gm23673 3 124848589 to 124848886 297 + unclassified non-coding RNA gene predicted gene, 23673
Gm9381 3 125042262 to 125043273 1011 - pseudogene predicted gene 9381
Gm42826 3 125216915 to 125219553 2638 - unclassified gene predicted gene 42826
Tssr31558 3 125404072 to 125404131 59 + TSS region transcription start site region 31558
Ndst4 3 125404076 to 125728351 324275 + protein coding gene N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
Tssr31559 3 125404325 to 125404340 15 + TSS region transcription start site region 31559
Gm35237 3 125520100 to 125535080 14980 - lncRNA gene predicted gene, 35237
D3Mit370 3 125522356 to 125522588 232 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 370
D3Mit13 3 125522368 to 125522587 219 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 13
am3 3 125522368 to 136996870 11474502 heritable phenotypic marker absence of third molars
Sle18 3 125522587 to 87301597 -38220990 QTL systematic lupus erythematosus susceptibility 18
Tssr31560 3 125587810 to 125587811 1 + TSS region transcription start site region 31560
Gm35186 3 125657551 to 125681294 23743 - lncRNA gene predicted gene, 35186
Tssr31561 3 125680979 to 125681033 54 + TSS region transcription start site region 31561
Ugt8a 3 125865271 to 125938619 73348 - protein coding gene UDP galactosyltransferase 8A
Gm40145 3 125896544 to 125900599 4055 + lncRNA gene predicted gene, 40145
Tssr35515 3 125935930 to 125935934 4 - TSS region transcription start site region 35515
Cpgi13783 3 125937570 to 125939276 1706 CpG island CpG island 13783
Tssr35516 3 125938484 to 125938496 12 - TSS region transcription start site region 35516
Tssr35517 3 125938497 to 125938517 20 - TSS region transcription start site region 35517
Tssr35518 3 125938522 to 125938536 14 - TSS region transcription start site region 35518
Tssr35519 3 125938537 to 125938605 68 - TSS region transcription start site region 35519
Tssr35520 3 125938606 to 125938617 11 - TSS region transcription start site region 35520