Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:122579495-123089503

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fnbp1l 3 122538719 to 122619714 80995 - protein coding gene formin binding protein 1-like
Tssr35457 3 122590198 to 122590211 13 - TSS region transcription start site region 35457
Tssr35458 3 122612221 to 122612226 5 - TSS region transcription start site region 35458
Cpgi13770 3 122618384 to 122620364 1980 CpG island CpG island 13770
Tssr35459 3 122619442 to 122619463 21 - TSS region transcription start site region 35459
Tssr35460 3 122619663 to 122619680 17 - TSS region transcription start site region 35460
Tssr35461 3 122619683 to 122619698 15 - TSS region transcription start site region 35461
Tssr35462 3 122619712 to 122619723 11 - TSS region transcription start site region 35462
Tssr35463 3 122619737 to 122619748 11 - TSS region transcription start site region 35463
Gm43568 3 122622255 to 122630168 7913 - lincRNA gene predicted gene 43568
Tssr35464 3 122629743 to 122629766 23 - TSS region transcription start site region 35464
Gm5981 3 122632785 to 122633271 486 - pseudogene predicted gene 5981
Gm40140 3 122662220 to 122684080 21860 - lncRNA gene predicted gene, 40140
Tssr31507 3 122690754 to 122690755 1 + TSS region transcription start site region 31507
D3Mit80 3 122693359 to 122693549 190 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 80
Tssr31508 3 122724997 to 122725039 42 + TSS region transcription start site region 31508
Cpgi13771 3 122728792 to 122730935 2143 CpG island CpG island 13771
Tssr31509 3 122728944 to 122728995 51 + TSS region transcription start site region 31509
Tssr31510 3 122729004 to 122729015 11 + TSS region transcription start site region 31510
Tssr31511 3 122729119 to 122729134 15 + TSS region transcription start site region 31511
Pde5a 3 122729158 to 122859374 130216 + protein coding gene phosphodiesterase 5A, cGMP-specific
Tssr31512 3 122729163 to 122729182 19 + TSS region transcription start site region 31512
Tssr31513 3 122729198 to 122729233 35 + TSS region transcription start site region 31513
Tssr31514 3 122729709 to 122729735 26 + TSS region transcription start site region 31514
Tssr31515 3 122729850 to 122729869 19 + TSS region transcription start site region 31515
Tssr31516 3 122729870 to 122729894 24 + TSS region transcription start site region 31516
Tssr31517 3 122729918 to 122729929 11 + TSS region transcription start site region 31517
Tssr31518 3 122730047 to 122730057 10 + TSS region transcription start site region 31518
Tssr31519 3 122730113 to 122730119 6 + TSS region transcription start site region 31519
Tssr31520 3 122730136 to 122730153 17 + TSS region transcription start site region 31520
Tssr31521 3 122730216 to 122730239 23 + TSS region transcription start site region 31521
Tssr31522 3 122730252 to 122730261 9 + TSS region transcription start site region 31522
Gm34139 3 122788221 to 122788514 293 - pseudogene predicted gene, 34139
4930447N08Rik 3 122795091 to 122801980 6889 - lncRNA gene RIKEN cDNA 4930447N08 gene
Tssr35465 3 122801985 to 122801992 7 - TSS region transcription start site region 35465
Tssr35466 3 122801993 to 122802008 15 - TSS region transcription start site region 35466
Tssr35467 3 122802012 to 122802018 6 - TSS region transcription start site region 35467
Tssr35468 3 122802019 to 122802045 26 - TSS region transcription start site region 35468
Gm34577 3 122812525 to 122850453 37928 - lncRNA gene predicted gene, 34577
Tssr31523 3 122834349 to 122834359 10 + TSS region transcription start site region 31523
Tssr31524 3 122834495 to 122834503 8 + TSS region transcription start site region 31524
Tssr31525 3 122834560 to 122834584 24 + TSS region transcription start site region 31525
Tssr31526 3 122834754 to 122834771 17 + TSS region transcription start site region 31526
Tssr31527 3 122834781 to 122834798 17 + TSS region transcription start site region 31527
Tssr31528 3 122856426 to 122856440 14 + TSS region transcription start site region 31528
Tssr31529 3 122860269 to 122860270 1 + TSS region transcription start site region 31529
Gm9364 3 122861913 to 122862372 459 + pseudogene predicted gene 9364
Tssr35469 3 122871573 to 122871582 9 - TSS region transcription start site region 35469
Tssr35470 3 122871622 to 122871649 27 - TSS region transcription start site region 35470
4933405D12Rik 3 122882592 to 122924116 41524 - antisense lncRNA gene RIKEN cDNA 4933405D12 gene
Tssr31530 3 122885278 to 122885286 8 + TSS region transcription start site region 31530
Fabp2 3 122895072 to 122899506 4434 + protein coding gene fatty acid binding protein 2, intestinal
Tssr31531 3 122895369 to 122895384 15 + TSS region transcription start site region 31531
Tssr31532 3 122896733 to 122896773 40 + TSS region transcription start site region 31532
D3Mit108.1 3 122898686 to 122898809 123 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 108.1
D3Mit108 3 122898771 to 122899085 314 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 108
Tssr31533 3 122899337 to 122899383 46 + TSS region transcription start site region 31533
Tssr31534 3 122899443 to 122899459 16 + TSS region transcription start site region 31534
Tssr35471 3 122899500 to 122899505 5 - TSS region transcription start site region 35471
Gm10959 3 122913070 to 122919360 6290 - protein coding gene predicted gene 10959
Cpgi13772 3 122923996 to 122924514 518 CpG island CpG island 13772
Tssr35472 3 122924103 to 122924145 42 - TSS region transcription start site region 35472
Tssr31535 3 122924353 to 122924402 49 + TSS region transcription start site region 31535
1810037I17Rik 3 122924397 to 122926194 1797 + protein coding gene RIKEN cDNA 1810037I17 gene
Tssr31536 3 122924420 to 122924459 39 + TSS region transcription start site region 31536
Usp53 3 122931486 to 122984447 52961 - protein coding gene ubiquitin specific peptidase 53
Cpgi13773 3 122983860 to 122985092 1232 CpG island CpG island 13773
Tssr35473 3 122984272 to 122984296 24 - TSS region transcription start site region 35473
Tssr35474 3 122984378 to 122984396 18 - TSS region transcription start site region 35474
Tssr35475 3 122984404 to 122984512 108 - TSS region transcription start site region 35475
Tssr31537 3 122984693 to 122984722 29 + TSS region transcription start site region 31537
Gm43285 3 122995411 to 122999002 3591 + unclassified gene predicted gene 43285
Myoz2 3 123006206 to 123035003 28797 - protein coding gene myozenin 2
Gm22066 3 123015259 to 123015368 109 - miRNA gene predicted gene, 22066
Tssr31538 3 123016551 to 123016578 27 + TSS region transcription start site region 31538
Tssr35476 3 123024852 to 123024856 4 - TSS region transcription start site region 35476
Tssr35477 3 123026139 to 123026150 11 - TSS region transcription start site region 35477
Tssr35478 3 123026202 to 123026215 13 - TSS region transcription start site region 35478
Tssr35479 3 123033007 to 123033015 8 - TSS region transcription start site region 35479
Tssr35480 3 123034884 to 123034895 11 - TSS region transcription start site region 35480
Tssr35481 3 123034943 to 123034995 52 - TSS region transcription start site region 35481
Tssr35482 3 123041051 to 123041053 2 - TSS region transcription start site region 35482
Gm43286 3 123043312 to 123043735 423 - pseudogene predicted gene 43286
Synpo2 3 123076519 to 123236149 159630 - protein coding gene synaptopodin 2
Tssr31539 3 123085673 to 123085678 5 + TSS region transcription start site region 31539
Tssr35483 3 123085926 to 123085947 21 - TSS region transcription start site region 35483