Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:122474198-122984233

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcar3 3 122419780 to 122530191 110411 + protein coding gene breast cancer anti-estrogen resistance 3
Gm34349 3 122476461 to 122483094 6633 - lncRNA gene predicted gene, 34349
Tssr31499 3 122483771 to 122483794 23 + TSS region transcription start site region 31499
Tssr31500 3 122504659 to 122504666 7 + TSS region transcription start site region 31500
Cpgi13769 3 122508015 to 122508455 440 CpG island CpG island 13769
Tssr31501 3 122510878 to 122510882 4 + TSS region transcription start site region 31501
Tssr31502 3 122511199 to 122511220 21 + TSS region transcription start site region 31502
Tssr31503 3 122511272 to 122511284 12 + TSS region transcription start site region 31503
Tssr31504 3 122511955 to 122511958 3 + TSS region transcription start site region 31504
Tssr31505 3 122512170 to 122512206 36 + TSS region transcription start site region 31505
Tssr35450 3 122512999 to 122513049 50 - TSS region transcription start site region 35450
Fnbp1l 3 122538719 to 122619714 80995 - protein coding gene formin binding protein 1-like
Tssr35451 3 122539544 to 122539549 5 - TSS region transcription start site region 35451
Mir7657 3 122541625 to 122541681 56 - miRNA gene microRNA 7657
Tssr35452 3 122551534 to 122551541 7 - TSS region transcription start site region 35452
Tssr35453 3 122552338 to 122552341 3 - TSS region transcription start site region 35453
Tssr35454 3 122559099 to 122559116 17 - TSS region transcription start site region 35454
Gm43569 3 122565050 to 122574740 9690 + antisense lncRNA gene predicted gene 43569
Tssr31506 3 122566719 to 122566739 20 + TSS region transcription start site region 31506
Tssr35455 3 122568785 to 122568808 23 - TSS region transcription start site region 35455
Tssr35456 3 122569710 to 122569749 39 - TSS region transcription start site region 35456
Gm42994 3 122574524 to 122577072 2548 - unclassified gene predicted gene 42994
Tssr35457 3 122590198 to 122590211 13 - TSS region transcription start site region 35457
Tssr35458 3 122612221 to 122612226 5 - TSS region transcription start site region 35458
Cpgi13770 3 122618384 to 122620364 1980 CpG island CpG island 13770
Tssr35459 3 122619442 to 122619463 21 - TSS region transcription start site region 35459
Tssr35460 3 122619663 to 122619680 17 - TSS region transcription start site region 35460
Tssr35461 3 122619683 to 122619698 15 - TSS region transcription start site region 35461
Tssr35462 3 122619712 to 122619723 11 - TSS region transcription start site region 35462
Tssr35463 3 122619737 to 122619748 11 - TSS region transcription start site region 35463
Gm43568 3 122622255 to 122630168 7913 - lincRNA gene predicted gene 43568
Tssr35464 3 122629743 to 122629766 23 - TSS region transcription start site region 35464
Gm5981 3 122632785 to 122633271 486 - pseudogene predicted gene 5981
Gm40140 3 122662220 to 122684080 21860 - lncRNA gene predicted gene, 40140
Tssr31507 3 122690754 to 122690755 1 + TSS region transcription start site region 31507
D3Mit80 3 122693359 to 122693549 190 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 80
Tssr31508 3 122724997 to 122725039 42 + TSS region transcription start site region 31508
Cpgi13771 3 122728792 to 122730935 2143 CpG island CpG island 13771
Tssr31509 3 122728944 to 122728995 51 + TSS region transcription start site region 31509
Tssr31510 3 122729004 to 122729015 11 + TSS region transcription start site region 31510
Tssr31511 3 122729119 to 122729134 15 + TSS region transcription start site region 31511
Pde5a 3 122729158 to 122859374 130216 + protein coding gene phosphodiesterase 5A, cGMP-specific
Tssr31512 3 122729163 to 122729182 19 + TSS region transcription start site region 31512
Tssr31513 3 122729198 to 122729233 35 + TSS region transcription start site region 31513
Tssr31514 3 122729709 to 122729735 26 + TSS region transcription start site region 31514
Tssr31515 3 122729850 to 122729869 19 + TSS region transcription start site region 31515
Tssr31516 3 122729870 to 122729894 24 + TSS region transcription start site region 31516
Tssr31517 3 122729918 to 122729929 11 + TSS region transcription start site region 31517
Tssr31518 3 122730047 to 122730057 10 + TSS region transcription start site region 31518
Tssr31519 3 122730113 to 122730119 6 + TSS region transcription start site region 31519
Tssr31520 3 122730136 to 122730153 17 + TSS region transcription start site region 31520
Tssr31521 3 122730216 to 122730239 23 + TSS region transcription start site region 31521
Tssr31522 3 122730252 to 122730261 9 + TSS region transcription start site region 31522
Gm34139 3 122788221 to 122788514 293 - pseudogene predicted gene, 34139
4930447N08Rik 3 122795091 to 122801980 6889 - lncRNA gene RIKEN cDNA 4930447N08 gene
Tssr35465 3 122801985 to 122801992 7 - TSS region transcription start site region 35465
Tssr35466 3 122801993 to 122802008 15 - TSS region transcription start site region 35466
Tssr35467 3 122802012 to 122802018 6 - TSS region transcription start site region 35467
Tssr35468 3 122802019 to 122802045 26 - TSS region transcription start site region 35468
Gm34577 3 122812525 to 122850453 37928 - lncRNA gene predicted gene, 34577
Tssr31523 3 122834349 to 122834359 10 + TSS region transcription start site region 31523
Tssr31524 3 122834495 to 122834503 8 + TSS region transcription start site region 31524
Tssr31525 3 122834560 to 122834584 24 + TSS region transcription start site region 31525
Tssr31526 3 122834754 to 122834771 17 + TSS region transcription start site region 31526
Tssr31527 3 122834781 to 122834798 17 + TSS region transcription start site region 31527
Tssr31528 3 122856426 to 122856440 14 + TSS region transcription start site region 31528
Tssr31529 3 122860269 to 122860270 1 + TSS region transcription start site region 31529
Gm9364 3 122861913 to 122862372 459 + pseudogene predicted gene 9364
Tssr35469 3 122871573 to 122871582 9 - TSS region transcription start site region 35469
Tssr35470 3 122871622 to 122871649 27 - TSS region transcription start site region 35470
4933405D12Rik 3 122882592 to 122924116 41524 - antisense lncRNA gene RIKEN cDNA 4933405D12 gene
Tssr31530 3 122885278 to 122885286 8 + TSS region transcription start site region 31530
Fabp2 3 122895072 to 122899506 4434 + protein coding gene fatty acid binding protein 2, intestinal
Tssr31531 3 122895369 to 122895384 15 + TSS region transcription start site region 31531
Tssr31532 3 122896733 to 122896773 40 + TSS region transcription start site region 31532
D3Mit108.1 3 122898686 to 122898809 123 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 108.1
D3Mit108 3 122898771 to 122899085 314 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 108
Tssr31533 3 122899337 to 122899383 46 + TSS region transcription start site region 31533
Tssr31534 3 122899443 to 122899459 16 + TSS region transcription start site region 31534
Tssr35471 3 122899500 to 122899505 5 - TSS region transcription start site region 35471
Gm10959 3 122913070 to 122919360 6290 - protein coding gene predicted gene 10959
Cpgi13772 3 122923996 to 122924514 518 CpG island CpG island 13772
Tssr35472 3 122924103 to 122924145 42 - TSS region transcription start site region 35472
Tssr31535 3 122924353 to 122924402 49 + TSS region transcription start site region 31535
1810037I17Rik 3 122924397 to 122926194 1797 + protein coding gene RIKEN cDNA 1810037I17 gene
Tssr31536 3 122924420 to 122924459 39 + TSS region transcription start site region 31536
Usp53 3 122931486 to 122984447 52961 - protein coding gene ubiquitin specific peptidase 53
Cpgi13773 3 122983860 to 122985092 1232 CpG island CpG island 13773