Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:122295162-127526367

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387 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia5c 3 107469620 to 125522588 18052968 QTL collagen induced arthritis QTL 5c
Gm40190 3 122293439 to 122303613 10174 + lincRNA gene predicted gene, 40190
Gm40139 3 122321663 to 122331659 9996 + lncRNA gene predicted gene, 40139
Tssr35445 3 122372813 to 122372853 40 - TSS region transcription start site region 35445
Gm4610 3 122377097 to 122391811 14714 - antisense lncRNA gene predicted gene 4610
Tssr35446 3 122391227 to 122391267 40 - TSS region transcription start site region 35446
Tssr35447 3 122391842 to 122391862 20 - TSS region transcription start site region 35447
Tssr35448 3 122391993 to 122391998 5 - TSS region transcription start site region 35448
Cfq3 3 122395162 to 127426367 5031205 QTL conditioned fear QTL 3
Tssr35449 3 122408830 to 122408847 17 - TSS region transcription start site region 35449
Cpgi13768 3 122419553 to 122420603 1050 CpG island CpG island 13768
Tssr31494 3 122419739 to 122419754 15 + TSS region transcription start site region 31494
Tssr31495 3 122419772 to 122419787 15 + TSS region transcription start site region 31495
Bcar3 3 122419780 to 122530191 110411 + protein coding gene breast cancer anti-estrogen resistance 3
Tssr31496 3 122419793 to 122419806 13 + TSS region transcription start site region 31496
Tssr31497 3 122419866 to 122419872 6 + TSS region transcription start site region 31497
Tssr31498 3 122419985 to 122420000 15 + TSS region transcription start site region 31498
Gm42836 3 122426443 to 122459060 32617 - antisense lncRNA gene predicted gene 42836
Gm25153 3 122464727 to 122464882 155 + snRNA gene predicted gene, 25153
Gm34349 3 122476461 to 122483094 6633 - lncRNA gene predicted gene, 34349
Tssr31499 3 122483771 to 122483794 23 + TSS region transcription start site region 31499
Tssr31500 3 122504659 to 122504666 7 + TSS region transcription start site region 31500
Cpgi13769 3 122508015 to 122508455 440 CpG island CpG island 13769
Tssr31501 3 122510878 to 122510882 4 + TSS region transcription start site region 31501
Tssr31502 3 122511199 to 122511220 21 + TSS region transcription start site region 31502
Tssr31503 3 122511272 to 122511284 12 + TSS region transcription start site region 31503
Tssr31504 3 122511955 to 122511958 3 + TSS region transcription start site region 31504
Tssr31505 3 122512170 to 122512206 36 + TSS region transcription start site region 31505
Tssr35450 3 122512999 to 122513049 50 - TSS region transcription start site region 35450
Fnbp1l 3 122538719 to 122619714 80995 - protein coding gene formin binding protein 1-like
Tssr35451 3 122539544 to 122539549 5 - TSS region transcription start site region 35451
Mir7657 3 122541625 to 122541681 56 - miRNA gene microRNA 7657
Tssr35452 3 122551534 to 122551541 7 - TSS region transcription start site region 35452
Tssr35453 3 122552338 to 122552341 3 - TSS region transcription start site region 35453
Tssr35454 3 122559099 to 122559116 17 - TSS region transcription start site region 35454
Gm43569 3 122565050 to 122574740 9690 + antisense lncRNA gene predicted gene 43569
Tssr31506 3 122566719 to 122566739 20 + TSS region transcription start site region 31506
Tssr35455 3 122568785 to 122568808 23 - TSS region transcription start site region 35455
Tssr35456 3 122569710 to 122569749 39 - TSS region transcription start site region 35456
Gm42994 3 122574524 to 122577072 2548 - unclassified gene predicted gene 42994
Tssr35457 3 122590198 to 122590211 13 - TSS region transcription start site region 35457
Tssr35458 3 122612221 to 122612226 5 - TSS region transcription start site region 35458
Cpgi13770 3 122618384 to 122620364 1980 CpG island CpG island 13770
Tssr35459 3 122619442 to 122619463 21 - TSS region transcription start site region 35459
Tssr35460 3 122619663 to 122619680 17 - TSS region transcription start site region 35460
Tssr35461 3 122619683 to 122619698 15 - TSS region transcription start site region 35461
Tssr35462 3 122619712 to 122619723 11 - TSS region transcription start site region 35462
Tssr35463 3 122619737 to 122619748 11 - TSS region transcription start site region 35463
Gm43568 3 122622255 to 122630168 7913 - lincRNA gene predicted gene 43568
Tssr35464 3 122629743 to 122629766 23 - TSS region transcription start site region 35464
Gm5981 3 122632785 to 122633271 486 - pseudogene predicted gene 5981
Gm40140 3 122662220 to 122684080 21860 - lncRNA gene predicted gene, 40140
Tssr31507 3 122690754 to 122690755 1 + TSS region transcription start site region 31507
D3Mit80 3 122693359 to 122693549 190 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 80
Tssr31508 3 122724997 to 122725039 42 + TSS region transcription start site region 31508
Cpgi13771 3 122728792 to 122730935 2143 CpG island CpG island 13771
Tssr31509 3 122728944 to 122728995 51 + TSS region transcription start site region 31509
Tssr31510 3 122729004 to 122729015 11 + TSS region transcription start site region 31510
Tssr31511 3 122729119 to 122729134 15 + TSS region transcription start site region 31511
Pde5a 3 122729158 to 122859374 130216 + protein coding gene phosphodiesterase 5A, cGMP-specific
Tssr31512 3 122729163 to 122729182 19 + TSS region transcription start site region 31512
Tssr31513 3 122729198 to 122729233 35 + TSS region transcription start site region 31513
Tssr31514 3 122729709 to 122729735 26 + TSS region transcription start site region 31514
Tssr31515 3 122729850 to 122729869 19 + TSS region transcription start site region 31515
Tssr31516 3 122729870 to 122729894 24 + TSS region transcription start site region 31516
Tssr31517 3 122729918 to 122729929 11 + TSS region transcription start site region 31517
Tssr31518 3 122730047 to 122730057 10 + TSS region transcription start site region 31518
Tssr31519 3 122730113 to 122730119 6 + TSS region transcription start site region 31519
Tssr31520 3 122730136 to 122730153 17 + TSS region transcription start site region 31520
Tssr31521 3 122730216 to 122730239 23 + TSS region transcription start site region 31521
Tssr31522 3 122730252 to 122730261 9 + TSS region transcription start site region 31522
Gm34139 3 122788221 to 122788514 293 - pseudogene predicted gene, 34139
4930447N08Rik 3 122795091 to 122801980 6889 - lncRNA gene RIKEN cDNA 4930447N08 gene
Tssr35465 3 122801985 to 122801992 7 - TSS region transcription start site region 35465
Tssr35466 3 122801993 to 122802008 15 - TSS region transcription start site region 35466
Tssr35467 3 122802012 to 122802018 6 - TSS region transcription start site region 35467
Tssr35468 3 122802019 to 122802045 26 - TSS region transcription start site region 35468
Gm34577 3 122812525 to 122850453 37928 - lncRNA gene predicted gene, 34577
Tssr31523 3 122834349 to 122834359 10 + TSS region transcription start site region 31523
Tssr31524 3 122834495 to 122834503 8 + TSS region transcription start site region 31524
Tssr31525 3 122834560 to 122834584 24 + TSS region transcription start site region 31525
Tssr31526 3 122834754 to 122834771 17 + TSS region transcription start site region 31526
Tssr31527 3 122834781 to 122834798 17 + TSS region transcription start site region 31527
Tssr31528 3 122856426 to 122856440 14 + TSS region transcription start site region 31528
Tssr31529 3 122860269 to 122860270 1 + TSS region transcription start site region 31529
Gm9364 3 122861913 to 122862372 459 + pseudogene predicted gene 9364
Tssr35469 3 122871573 to 122871582 9 - TSS region transcription start site region 35469
Tssr35470 3 122871622 to 122871649 27 - TSS region transcription start site region 35470
4933405D12Rik 3 122882592 to 122924116 41524 - antisense lncRNA gene RIKEN cDNA 4933405D12 gene
Tssr31530 3 122885278 to 122885286 8 + TSS region transcription start site region 31530
Fabp2 3 122895072 to 122899506 4434 + protein coding gene fatty acid binding protein 2, intestinal
Tssr31531 3 122895369 to 122895384 15 + TSS region transcription start site region 31531
Tssr31532 3 122896733 to 122896773 40 + TSS region transcription start site region 31532
D3Mit108.1 3 122898686 to 122898809 123 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 108.1
D3Mit108 3 122898771 to 122899085 314 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 108
Tssr31533 3 122899337 to 122899383 46 + TSS region transcription start site region 31533
Tssr31534 3 122899443 to 122899459 16 + TSS region transcription start site region 31534
Tssr35471 3 122899500 to 122899505 5 - TSS region transcription start site region 35471
Gm10959 3 122913070 to 122919360 6290 - protein coding gene predicted gene 10959
Cpgi13772 3 122923996 to 122924514 518 CpG island CpG island 13772
Tssr35472 3 122924103 to 122924145 42 - TSS region transcription start site region 35472
Tssr31535 3 122924353 to 122924402 49 + TSS region transcription start site region 31535
1810037I17Rik 3 122924397 to 122926194 1797 + protein coding gene RIKEN cDNA 1810037I17 gene
Tssr31536 3 122924420 to 122924459 39 + TSS region transcription start site region 31536
Usp53 3 122931486 to 122984447 52961 - protein coding gene ubiquitin specific peptidase 53
Cpgi13773 3 122983860 to 122985092 1232 CpG island CpG island 13773
Tssr35473 3 122984272 to 122984296 24 - TSS region transcription start site region 35473
Tssr35474 3 122984378 to 122984396 18 - TSS region transcription start site region 35474
Tssr35475 3 122984404 to 122984512 108 - TSS region transcription start site region 35475
Tssr31537 3 122984693 to 122984722 29 + TSS region transcription start site region 31537
Gm43285 3 122995411 to 122999002 3591 + unclassified gene predicted gene 43285
Myoz2 3 123006206 to 123035003 28797 - protein coding gene myozenin 2
Gm22066 3 123015259 to 123015368 109 - miRNA gene predicted gene, 22066
Tssr31538 3 123016551 to 123016578 27 + TSS region transcription start site region 31538
Tssr35476 3 123024852 to 123024856 4 - TSS region transcription start site region 35476
Tssr35477 3 123026139 to 123026150 11 - TSS region transcription start site region 35477
Tssr35478 3 123026202 to 123026215 13 - TSS region transcription start site region 35478
Tssr35479 3 123033007 to 123033015 8 - TSS region transcription start site region 35479
Tssr35480 3 123034884 to 123034895 11 - TSS region transcription start site region 35480
Tssr35481 3 123034943 to 123034995 52 - TSS region transcription start site region 35481
Tssr35482 3 123041051 to 123041053 2 - TSS region transcription start site region 35482
Gm43286 3 123043312 to 123043735 423 - pseudogene predicted gene 43286
Synpo2 3 123076519 to 123236149 159630 - protein coding gene synaptopodin 2
Tssr31539 3 123085673 to 123085678 5 + TSS region transcription start site region 31539
Tssr35483 3 123085926 to 123085947 21 - TSS region transcription start site region 35483
Tssr35484 3 123105282 to 123105285 3 - TSS region transcription start site region 35484
Tssr35485 3 123112890 to 123112904 14 - TSS region transcription start site region 35485
Tssr35486 3 123113567 to 123113578 11 - TSS region transcription start site region 35486
Tssr35487 3 123113761 to 123113791 30 - TSS region transcription start site region 35487
Tssr35488 3 123114238 to 123114255 17 - TSS region transcription start site region 35488
Tssr35489 3 123114346 to 123114383 37 - TSS region transcription start site region 35489
Tssr35490 3 123114473 to 123114495 22 - TSS region transcription start site region 35490
Cpgi13774 3 123116943 to 123117113 170 CpG island CpG island 13774
Tssr35491 3 123116985 to 123116996 11 - TSS region transcription start site region 35491
Tssr35492 3 123117013 to 123117051 38 - TSS region transcription start site region 35492
Tssr35493 3 123117164 to 123117169 5 - TSS region transcription start site region 35493
Tssr35494 3 123117195 to 123117198 3 - TSS region transcription start site region 35494
Tssr35495 3 123117257 to 123117266 9 - TSS region transcription start site region 35495
Gm43744 3 123142288 to 123142975 687 + pseudogene predicted gene 43744
Gm43287 3 123163873 to 123164472 599 - unclassified gene predicted gene 43287
Gm43288 3 123190135 to 123192762 2627 - unclassified gene predicted gene 43288
Gm43283 3 123209400 to 123211947 2547 - unclassified gene predicted gene 43283
Tssr35496 3 123225133 to 123225137 4 - TSS region transcription start site region 35496
Cpgi13775 3 123235992 to 123236352 360 CpG island CpG island 13775
Tssr35497 3 123236111 to 123236122 11 - TSS region transcription start site region 35497
Tssr35498 3 123236134 to 123236157 23 - TSS region transcription start site region 35498
Tssr31540 3 123264776 to 123264787 11 + TSS region transcription start site region 31540
Tssr31541 3 123264791 to 123264818 27 + TSS region transcription start site region 31541
Cpgi13776 3 123266945 to 123268212 1267 CpG island CpG island 13776
Tssr31542 3 123267181 to 123267202 21 + TSS region transcription start site region 31542
Tssr31543 3 123267208 to 123267221 13 + TSS region transcription start site region 31543
Tssr31544 3 123267445 to 123267500 55 + TSS region transcription start site region 31544
Sec24d 3 123267496 to 123365641 98145 + protein coding gene Sec24 related gene family, member D (S. cerevisiae)
Tssr31545 3 123269692 to 123269705 13 + TSS region transcription start site region 31545
Tssr31546 3 123293683 to 123293709 26 + TSS region transcription start site region 31546
Tssr31547 3 123293758 to 123293806 48 + TSS region transcription start site region 31547
Gm40142 3 123321157 to 123326166 5009 - lncRNA gene predicted gene, 40142
Tssr31548 3 123355553 to 123355586 33 + TSS region transcription start site region 31548
Mettl14 3 123368295 to 123385990 17695 - protein coding gene methyltransferase like 14
Tssr35499 3 123385668 to 123385672 4 - TSS region transcription start site region 35499
Cpgi13777 3 123385726 to 123386068 342 CpG island CpG island 13777
Tssr35500 3 123385925 to 123385993 68 - TSS region transcription start site region 35500
Tssr35501 3 123385994 to 123386010 16 - TSS region transcription start site region 35501
Gm22713 3 123391114 to 123391243 129 - snRNA gene predicted gene, 22713
Tssr31549 3 123429801 to 123429813 12 + TSS region transcription start site region 31549
Emrq3 3 123433893 to 123971849 537956 QTL emotional reactivity QTL 3
D3Mit216 3 123433893 to 123434014 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 216
Gm40143 3 123434215 to 123437856 3641 + lncRNA gene predicted gene, 40143
Cpgi13778 3 123442821 to 123443237 416 CpG island CpG island 13778
Gm35065 3 123444328 to 123447447 3119 - antisense lncRNA gene predicted gene, 35065
Cpgi13779 3 123446620 to 123447805 1185 CpG island CpG island 13779
Prss12 3 123446913 to 123506597 59684 + protein coding gene protease, serine 12 neurotrypsin (motopsin)
Tssr31550 3 123447118 to 123447155 37 + TSS region transcription start site region 31550
Gm43590 3 123471970 to 123472356 386 + unclassified gene predicted gene 43590
Snhg8 3 123507552 to 123508336 784 - lncRNA gene small nucleolar RNA host gene 8
Snora24 3 123507937 to 123508066 129 - snoRNA gene small nucleolar RNA, H/ACA box 24
Cpgi13780 3 123507938 to 123508958 1020 CpG island CpG island 13780
Tssr35502 3 123508330 to 123508341 11 - TSS region transcription start site region 35502
Tssr31551 3 123508550 to 123508568 18 + TSS region transcription start site region 31551
Tssr31552 3 123508588 to 123508615 27 + TSS region transcription start site region 31552
Tssr35503 3 123508915 to 123508929 14 - TSS region transcription start site region 35503
Gm9369 3 123509942 to 123510674 732 - pseudogene predicted pseudogene 9369
Ndst3 3 123526166 to 123690853 164687 - protein coding gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
D3Mit318 3 123631647 to 123631794 147 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 318
Tssr35504 3 123672380 to 123672400 20 - TSS region transcription start site region 35504
Gm42510 3 123685715 to 123687972 2257 - unclassified gene predicted gene 42510
Tssr35505 3 123688685 to 123688686 1 - TSS region transcription start site region 35505
Tssr35506 3 123690123 to 123690176 53 - TSS region transcription start site region 35506
Cpgi13781 3 123690620 to 123691299 679 CpG island CpG island 13781
Tssr35507 3 123690741 to 123690800 59 - TSS region transcription start site region 35507
Tssr35508 3 123690806 to 123690847 41 - TSS region transcription start site region 35508
Tssr35509 3 123690850 to 123690883 33 - TSS region transcription start site region 35509
Tssr31553 3 123691014 to 123691031 17 + TSS region transcription start site region 31553
Gm24456 3 123743297 to 123743403 106 - snRNA gene predicted gene, 24456
Tssr31554 3 123761249 to 123761299 50 + TSS region transcription start site region 31554
Gm15400 3 123761327 to 123761927 600 + pseudogene predicted gene 15400
n-TEctc1 3 123899187 to 123899258 71 - tRNA gene nuclear encoded tRNA glutamic acid 1 (anticodon CTC)
D3Dcr16 3 123971711 to 123971847 136 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 16
D3Mit199 3 123971716 to 123971849 133 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 199
Gm15399 3 123984097 to 123985104 1007 - pseudogene predicted gene 15399