Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:122021552-122511576

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42544 3 122023830 to 122027071 3241 + unclassified gene predicted gene 42544
Tssr31469 3 122044428 to 122044469 41 + TSS region transcription start site region 31469
Abca4 3 122044443 to 122180123 135680 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 4
Tssr31470 3 122044471 to 122044491 20 + TSS region transcription start site region 31470
Tssr31471 3 122076925 to 122076970 45 + TSS region transcription start site region 31471
Tssr31472 3 122077148 to 122077159 11 + TSS region transcription start site region 31472
Tssr31473 3 122082621 to 122082627 6 + TSS region transcription start site region 31473
Gm40138 3 122105484 to 122131814 26330 - lncRNA gene predicted gene, 40138
Gm43158 3 122125106 to 122227370 102264 - pseudogene predicted gene 43158
Tssr31474 3 122131988 to 122132002 14 + TSS region transcription start site region 31474
Gm43157 3 122152208 to 122152619 411 - pseudogene predicted gene 43157
Tssr31475 3 122173738 to 122173756 18 + TSS region transcription start site region 31475
Tssr31476 3 122173758 to 122173772 14 + TSS region transcription start site region 31476
Gm9361 3 122183653 to 122184984 1331 - pseudogene predicted gene 9361
Tssr35441 3 122195084 to 122195087 3 - TSS region transcription start site region 35441
Gm46822 3 122197406 to 122245445 48039 - lncRNA gene predicted gene, 46822
D3Jor1 3 122203846 to 122204596 750 DNA segment DNA segment, Chr 3, Barbara Jordan 1
Tssr1038 3 122211144 to 122211193 49 - TSS region transcription start site region 1038
Gm40137 3 122211428 to 122215304 3876 + lncRNA gene predicted gene, 40137
Gm4609 3 122230195 to 122231196 1001 - pseudogene predicted gene 4609
Gm22903 3 122232535 to 122232636 101 - miRNA gene predicted gene, 22903
Tssr35442 3 122239792 to 122239803 11 - TSS region transcription start site region 35442
Tssr31477 3 122243103 to 122243129 26 + TSS region transcription start site region 31477
Cpgi13765 3 122245217 to 122246614 1397 CpG island CpG island 13765
Tssr35443 3 122245219 to 122245229 10 - TSS region transcription start site region 35443
Tssr35444 3 122245302 to 122245332 30 - TSS region transcription start site region 35444
Tssr31478 3 122245476 to 122245550 74 + TSS region transcription start site region 31478
Gclm 3 122245557 to 122267215 21658 + protein coding gene glutamate-cysteine ligase, modifier subunit
Tssr31479 3 122245563 to 122245578 15 + TSS region transcription start site region 31479
Tssr31480 3 122245581 to 122245608 27 + TSS region transcription start site region 31480
Tssr31481 3 122245610 to 122245622 12 + TSS region transcription start site region 31481
Tssr31482 3 122245625 to 122245722 97 + TSS region transcription start site region 31482
Tssr1039 3 122245743 to 122245744 1 + TSS region transcription start site region 1039
Tssr31483 3 122245776 to 122245829 53 + TSS region transcription start site region 31483
Tssr31484 3 122245910 to 122245921 11 + TSS region transcription start site region 31484
Gm17494 3 122255958 to 122293720 37762 - unclassified non-coding RNA gene predicted gene, 17494
Tssr31485 3 122256686 to 122256691 5 + TSS region transcription start site region 31485
Gm6061 3 122256728 to 122257219 491 + pseudogene predicted gene 6061
Tssr31486 3 122259494 to 122259496 2 + TSS region transcription start site region 31486
Tssr31487 3 122261495 to 122261505 10 + TSS region transcription start site region 31487
Tssr31488 3 122262657 to 122262697 40 + TSS region transcription start site region 31488
Tssr31489 3 122266552 to 122266576 24 + TSS region transcription start site region 31489
Tssr31490 3 122268273 to 122268321 48 + TSS region transcription start site region 31490
Cpgi13766 3 122274023 to 122274868 845 CpG island CpG island 13766
Tssr31491 3 122274371 to 122274415 44 + TSS region transcription start site region 31491
Dnttip2 3 122274414 to 122285271 10857 + protein coding gene deoxynucleotidyltransferase, terminal, interacting protein 2
Tssr31492 3 122275553 to 122275580 27 + TSS region transcription start site region 31492
Cpgi13767 3 122292618 to 122294275 1657 CpG island CpG island 13767
n-TRtct2 3 122292948 to 122293032 84 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon TCT)
Gm40190 3 122293439 to 122303613 10174 + lincRNA gene predicted gene, 40190
Mir760 3 122293585 to 122293703 118 - miRNA gene microRNA 760
Tssr31493 3 122294150 to 122294160 10 + TSS region transcription start site region 31493
Gm40139 3 122321663 to 122331659 9996 + lncRNA gene predicted gene, 40139
Tssr35445 3 122372813 to 122372853 40 - TSS region transcription start site region 35445
Gm4610 3 122377097 to 122391811 14714 - antisense lncRNA gene predicted gene 4610
Tssr35446 3 122391227 to 122391267 40 - TSS region transcription start site region 35446
Tssr35447 3 122391842 to 122391862 20 - TSS region transcription start site region 35447
Tssr35448 3 122391993 to 122391998 5 - TSS region transcription start site region 35448
Cfq3 3 122395162 to 127426367 5031205 QTL conditioned fear QTL 3
Tssr35449 3 122408830 to 122408847 17 - TSS region transcription start site region 35449
Cpgi13768 3 122419553 to 122420603 1050 CpG island CpG island 13768
Tssr31494 3 122419739 to 122419754 15 + TSS region transcription start site region 31494
Tssr31495 3 122419772 to 122419787 15 + TSS region transcription start site region 31495
Bcar3 3 122419780 to 122530191 110411 + protein coding gene breast cancer anti-estrogen resistance 3
Tssr31496 3 122419793 to 122419806 13 + TSS region transcription start site region 31496
Tssr31497 3 122419866 to 122419872 6 + TSS region transcription start site region 31497
Tssr31498 3 122419985 to 122420000 15 + TSS region transcription start site region 31498
Gm42836 3 122426443 to 122459060 32617 - antisense lncRNA gene predicted gene 42836
Gm25153 3 122464727 to 122464882 155 + snRNA gene predicted gene, 25153
Gm34349 3 122476461 to 122483094 6633 - lncRNA gene predicted gene, 34349
Tssr31499 3 122483771 to 122483794 23 + TSS region transcription start site region 31499
Tssr31500 3 122504659 to 122504666 7 + TSS region transcription start site region 31500
Cpgi13769 3 122508015 to 122508455 440 CpG island CpG island 13769
Tssr31501 3 122510878 to 122510882 4 + TSS region transcription start site region 31501
Tssr31502 3 122511199 to 122511220 21 + TSS region transcription start site region 31502
Tssr31503 3 122511272 to 122511284 12 + TSS region transcription start site region 31503