Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:121494669-121974675

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
tnyw 3 100556675 to 121708839 21152164 heritable phenotypic marker tiny wasting
Slc44a3 3 121459528 to 121532344 72816 - protein coding gene solute carrier family 44, member 3
Gm38684 3 121530969 to 121532464 1495 + lncRNA gene predicted gene, 38684
Tssr31448 3 121531591 to 121531600 9 + TSS region transcription start site region 31448
Tssr31449 3 121531603 to 121531634 31 + TSS region transcription start site region 31449
Tssr31450 3 121531653 to 121531678 25 + TSS region transcription start site region 31450
Cpgi13759 3 121532053 to 121532477 424 CpG island CpG island 13759
Tssr35417 3 121532204 to 121532215 11 - TSS region transcription start site region 35417
Tssr35418 3 121532240 to 121532269 29 - TSS region transcription start site region 35418
Tssr35419 3 121532271 to 121532341 70 - TSS region transcription start site region 35419
Tssr31451 3 121532655 to 121532667 12 + TSS region transcription start site region 31451
A530020G20Rik 3 121532944 to 121536207 3263 + antisense lncRNA gene RIKEN cDNA A530020G20 gene
Gm40135 3 121545224 to 121562686 17462 + lncRNA gene predicted gene, 40135
Tssr1034 3 121547850 to 121547855 5 - TSS region transcription start site region 1034
Tssr35420 3 121548030 to 121548035 5 - TSS region transcription start site region 35420
Tssr35421 3 121548097 to 121548106 9 - TSS region transcription start site region 35421
Tssr35422 3 121548142 to 121548144 2 - TSS region transcription start site region 35422
Tssr35423 3 121548153 to 121548164 11 - TSS region transcription start site region 35423
Gm33547 3 121564153 to 121576164 12011 - lncRNA gene predicted gene, 33547
Tssr1035 3 121570993 to 121571007 14 + TSS region transcription start site region 1035
Tssr35424 3 121571605 to 121571615 10 - TSS region transcription start site region 35424
Tssr31452 3 121571816 to 121571839 23 + TSS region transcription start site region 31452
Tssr1036 3 121577493 to 121577507 14 + TSS region transcription start site region 1036
Gm33485 3 121580510 to 121606639 26129 - lncRNA gene predicted gene, 33485
Tssr1037 3 121589378 to 121589390 12 - TSS region transcription start site region 1037
Gm33708 3 121592922 to 121595092 2170 + lncRNA gene predicted gene, 33708
D3Mit251 3 121596511 to 121596642 131 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 251
Tssr35425 3 121616078 to 121616086 8 - TSS region transcription start site region 35425
A730020M07Rik 3 121634936 to 121643485 8549 - lincRNA gene RIKEN cDNA A730020M07 gene
4930432M17Rik 3 121670763 to 121682982 12219 + protein coding gene RIKEN cDNA 4930432M17 gene
Gm43608 3 121701501 to 121710246 8745 - lincRNA gene predicted gene 43608
D3Mit288 3 121708756 to 121708839 83 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 288
Gm43607 3 121711611 to 121712428 817 - lincRNA gene predicted gene 43607
Gm40136 3 121716591 to 121723428 6837 - lncRNA gene predicted gene, 40136
Gm43823 3 121721595 to 121723402 1807 - unclassified gene predicted gene 43823
Cpgi13760 3 121722966 to 121724316 1350 CpG island CpG island 13760
Tssr35426 3 121723395 to 121723409 14 - TSS region transcription start site region 35426
Tssr31453 3 121723515 to 121723534 19 + TSS region transcription start site region 31453
F3 3 121723537 to 121735048 11511 + protein coding gene coagulation factor III
Tssr31454 3 121723556 to 121723561 5 + TSS region transcription start site region 31454
Tssr31455 3 121723580 to 121723585 5 + TSS region transcription start site region 31455
Tssr31456 3 121723601 to 121723618 17 + TSS region transcription start site region 31456
Tssr31457 3 121724811 to 121724826 15 + TSS region transcription start site region 31457
Cpgi13761 3 121734213 to 121734364 151 CpG island CpG island 13761
Tssr31458 3 121734620 to 121734628 8 + TSS region transcription start site region 31458
Tssr31459 3 121734669 to 121734675 6 + TSS region transcription start site region 31459
Gm42777 3 121755044 to 121758646 3602 - unclassified gene predicted gene 42777
Tssr35427 3 121758544 to 121758555 11 - TSS region transcription start site region 35427
Abcd3 3 121758904 to 121815215 56311 - protein coding gene ATP-binding cassette, sub-family D (ALD), member 3
Gm43609 3 121762193 to 121764904 2711 - unclassified gene predicted gene 43609
4633401B06Rik 3 121787500 to 121788572 1072 - unclassified gene RIKEN cDNA 4633401B06 gene
Tssr35428 3 121787810 to 121787816 6 - TSS region transcription start site region 35428
Tssr35429 3 121814304 to 121814327 23 - TSS region transcription start site region 35429
Cpgi13762 3 121814520 to 121815627 1107 CpG island CpG island 13762
Tssr35430 3 121814794 to 121814816 22 - TSS region transcription start site region 35430
Tssr35431 3 121814919 to 121814951 32 - TSS region transcription start site region 35431
Tssr35432 3 121815137 to 121815153 16 - TSS region transcription start site region 35432
Tssr35433 3 121815160 to 121815209 49 - TSS region transcription start site region 35433
Tssr35434 3 121815212 to 121815225 13 - TSS region transcription start site region 35434
Tssr35435 3 121815415 to 121815506 91 - TSS region transcription start site region 35435
D3Mit347 3 121823065 to 121823170 105 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 347
Gm42776 3 121823444 to 121823849 405 - pseudogene predicted gene 42776
Tssr31460 3 121823928 to 121823931 3 + TSS region transcription start site region 31460
D3Mit317 3 121835044 to 121835167 123 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 317
Tssr35436 3 121838108 to 121838116 8 - TSS region transcription start site region 35436
Gm33924 3 121846094 to 121847153 1059 - lncRNA gene predicted gene, 33924
Tssr35437 3 121847086 to 121847090 4 - TSS region transcription start site region 35437
Tssr35438 3 121847148 to 121847176 28 - TSS region transcription start site region 35438
Tssr35439 3 121847189 to 121847198 9 - TSS region transcription start site region 35439
Gm33987 3 121851132 to 121855171 4039 + lncRNA gene predicted gene, 33987
Tssr31461 3 121851176 to 121851189 13 + TSS region transcription start site region 31461
Gm42593 3 121862842 to 121863218 376 + pseudogene predicted gene 42593
Tssr31462 3 121890770 to 121890777 7 + TSS region transcription start site region 31462
Gm34050 3 121896083 to 121903394 7311 - lncRNA gene predicted gene, 34050
Tssr35440 3 121900536 to 121900564 28 - TSS region transcription start site region 35440
Gm34119 3 121903583 to 121935839 32256 + lncRNA gene predicted gene, 34119
Gm46821 3 121926947 to 121936561 9614 - lncRNA gene predicted gene, 46821
Cpgi13763 3 121952953 to 121954049 1096 CpG island CpG island 13763
Arhgap29 3 121953072 to 122016157 63085 + protein coding gene Rho GTPase activating protein 29
Tssr31463 3 121953185 to 121953198 13 + TSS region transcription start site region 31463
Tssr31464 3 121953213 to 121953295 82 + TSS region transcription start site region 31464
Tssr31465 3 121953326 to 121953345 19 + TSS region transcription start site region 31465
Cpgi13764 3 121967777 to 121968152 375 CpG island CpG island 13764
Tssr31466 3 121967822 to 121967838 16 + TSS region transcription start site region 31466