Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:121435133-125015137

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371 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
tnyw 3 100556675 to 121708839 21152164 heritable phenotypic marker tiny wasting
Cnn3 3 121426541 to 121458205 31664 + protein coding gene calponin 3, acidic
Tssr31443 3 121449680 to 121449694 14 + TSS region transcription start site region 31443
Tssr31444 3 121449708 to 121449735 27 + TSS region transcription start site region 31444
Tssr31445 3 121449747 to 121449764 17 + TSS region transcription start site region 31445
Tssr1033 3 121456664 to 121456670 6 + TSS region transcription start site region 1033
Tssr31446 3 121457332 to 121457352 20 + TSS region transcription start site region 31446
Slc44a3 3 121459528 to 121532344 72816 - protein coding gene solute carrier family 44, member 3
D3Mit42 3 121461791 to 121461943 152 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 42
D3Mit43 3 121461791 to 121461913 122 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 43
Tssr35416 3 121478778 to 121478789 11 - TSS region transcription start site region 35416
Tssr31447 3 121484736 to 121484744 8 + TSS region transcription start site region 31447
Gm38684 3 121530969 to 121532464 1495 + lncRNA gene predicted gene, 38684
Tssr31448 3 121531591 to 121531600 9 + TSS region transcription start site region 31448
Tssr31449 3 121531603 to 121531634 31 + TSS region transcription start site region 31449
Tssr31450 3 121531653 to 121531678 25 + TSS region transcription start site region 31450
Cpgi13759 3 121532053 to 121532477 424 CpG island CpG island 13759
Tssr35417 3 121532204 to 121532215 11 - TSS region transcription start site region 35417
Tssr35418 3 121532240 to 121532269 29 - TSS region transcription start site region 35418
Tssr35419 3 121532271 to 121532341 70 - TSS region transcription start site region 35419
Tssr31451 3 121532655 to 121532667 12 + TSS region transcription start site region 31451
A530020G20Rik 3 121532944 to 121536207 3263 + antisense lncRNA gene RIKEN cDNA A530020G20 gene
Gm40135 3 121545224 to 121562686 17462 + lncRNA gene predicted gene, 40135
Tssr1034 3 121547850 to 121547855 5 - TSS region transcription start site region 1034
Tssr35420 3 121548030 to 121548035 5 - TSS region transcription start site region 35420
Tssr35421 3 121548097 to 121548106 9 - TSS region transcription start site region 35421
Tssr35422 3 121548142 to 121548144 2 - TSS region transcription start site region 35422
Tssr35423 3 121548153 to 121548164 11 - TSS region transcription start site region 35423
Gm33547 3 121564153 to 121576164 12011 - lncRNA gene predicted gene, 33547
Tssr1035 3 121570993 to 121571007 14 + TSS region transcription start site region 1035
Tssr35424 3 121571605 to 121571615 10 - TSS region transcription start site region 35424
Tssr31452 3 121571816 to 121571839 23 + TSS region transcription start site region 31452
Tssr1036 3 121577493 to 121577507 14 + TSS region transcription start site region 1036
Gm33485 3 121580510 to 121606639 26129 - lncRNA gene predicted gene, 33485
Tssr1037 3 121589378 to 121589390 12 - TSS region transcription start site region 1037
Gm33708 3 121592922 to 121595092 2170 + lncRNA gene predicted gene, 33708
D3Mit251 3 121596511 to 121596642 131 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 251
Tssr35425 3 121616078 to 121616086 8 - TSS region transcription start site region 35425
A730020M07Rik 3 121634936 to 121643485 8549 - lincRNA gene RIKEN cDNA A730020M07 gene
4930432M17Rik 3 121670763 to 121682982 12219 + protein coding gene RIKEN cDNA 4930432M17 gene
Gm43608 3 121701501 to 121710246 8745 - lincRNA gene predicted gene 43608
D3Mit288 3 121708756 to 121708839 83 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 288
Gm43607 3 121711611 to 121712428 817 - lincRNA gene predicted gene 43607
Gm40136 3 121716591 to 121723428 6837 - lncRNA gene predicted gene, 40136
Gm43823 3 121721595 to 121723402 1807 - unclassified gene predicted gene 43823
Cpgi13760 3 121722966 to 121724316 1350 CpG island CpG island 13760
Tssr35426 3 121723395 to 121723409 14 - TSS region transcription start site region 35426
Tssr31453 3 121723515 to 121723534 19 + TSS region transcription start site region 31453
F3 3 121723537 to 121735048 11511 + protein coding gene coagulation factor III
Tssr31454 3 121723556 to 121723561 5 + TSS region transcription start site region 31454
Tssr31455 3 121723580 to 121723585 5 + TSS region transcription start site region 31455
Tssr31456 3 121723601 to 121723618 17 + TSS region transcription start site region 31456
Tssr31457 3 121724811 to 121724826 15 + TSS region transcription start site region 31457
Cpgi13761 3 121734213 to 121734364 151 CpG island CpG island 13761
Tssr31458 3 121734620 to 121734628 8 + TSS region transcription start site region 31458
Tssr31459 3 121734669 to 121734675 6 + TSS region transcription start site region 31459
Gm42777 3 121755044 to 121758646 3602 - unclassified gene predicted gene 42777
Tssr35427 3 121758544 to 121758555 11 - TSS region transcription start site region 35427
Abcd3 3 121758904 to 121815215 56311 - protein coding gene ATP-binding cassette, sub-family D (ALD), member 3
Gm43609 3 121762193 to 121764904 2711 - unclassified gene predicted gene 43609
4633401B06Rik 3 121787500 to 121788572 1072 - unclassified gene RIKEN cDNA 4633401B06 gene
Tssr35428 3 121787810 to 121787816 6 - TSS region transcription start site region 35428
Tssr35429 3 121814304 to 121814327 23 - TSS region transcription start site region 35429
Cpgi13762 3 121814520 to 121815627 1107 CpG island CpG island 13762
Tssr35430 3 121814794 to 121814816 22 - TSS region transcription start site region 35430
Tssr35431 3 121814919 to 121814951 32 - TSS region transcription start site region 35431
Tssr35432 3 121815137 to 121815153 16 - TSS region transcription start site region 35432
Tssr35433 3 121815160 to 121815209 49 - TSS region transcription start site region 35433
Tssr35434 3 121815212 to 121815225 13 - TSS region transcription start site region 35434
Tssr35435 3 121815415 to 121815506 91 - TSS region transcription start site region 35435
D3Mit347 3 121823065 to 121823170 105 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 347
Gm42776 3 121823444 to 121823849 405 - pseudogene predicted gene 42776
Tssr31460 3 121823928 to 121823931 3 + TSS region transcription start site region 31460
D3Mit317 3 121835044 to 121835167 123 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 317
Tssr35436 3 121838108 to 121838116 8 - TSS region transcription start site region 35436
Gm33924 3 121846094 to 121847153 1059 - lncRNA gene predicted gene, 33924
Tssr35437 3 121847086 to 121847090 4 - TSS region transcription start site region 35437
Tssr35438 3 121847148 to 121847176 28 - TSS region transcription start site region 35438
Tssr35439 3 121847189 to 121847198 9 - TSS region transcription start site region 35439
Gm33987 3 121851132 to 121855171 4039 + lncRNA gene predicted gene, 33987
Tssr31461 3 121851176 to 121851189 13 + TSS region transcription start site region 31461
Gm42593 3 121862842 to 121863218 376 + pseudogene predicted gene 42593
Tssr31462 3 121890770 to 121890777 7 + TSS region transcription start site region 31462
Gm34050 3 121896083 to 121903394 7311 - lncRNA gene predicted gene, 34050
Tssr35440 3 121900536 to 121900564 28 - TSS region transcription start site region 35440
Gm34119 3 121903583 to 121935839 32256 + lncRNA gene predicted gene, 34119
Gm46821 3 121926947 to 121936561 9614 - lncRNA gene predicted gene, 46821
Cpgi13763 3 121952953 to 121954049 1096 CpG island CpG island 13763
Arhgap29 3 121953072 to 122016157 63085 + protein coding gene Rho GTPase activating protein 29
Tssr31463 3 121953185 to 121953198 13 + TSS region transcription start site region 31463
Tssr31464 3 121953213 to 121953295 82 + TSS region transcription start site region 31464
Tssr31465 3 121953326 to 121953345 19 + TSS region transcription start site region 31465
Cpgi13764 3 121967777 to 121968152 375 CpG island CpG island 13764
Tssr31466 3 121967822 to 121967838 16 + TSS region transcription start site region 31466
Tssr31467 3 121989268 to 121989272 4 + TSS region transcription start site region 31467
Tssr31468 3 122000158 to 122000171 13 + TSS region transcription start site region 31468
Gm42544 3 122023830 to 122027071 3241 + unclassified gene predicted gene 42544
Tssr31469 3 122044428 to 122044469 41 + TSS region transcription start site region 31469
Abca4 3 122044443 to 122180123 135680 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 4
Tssr31470 3 122044471 to 122044491 20 + TSS region transcription start site region 31470
Tssr31471 3 122076925 to 122076970 45 + TSS region transcription start site region 31471
Tssr31472 3 122077148 to 122077159 11 + TSS region transcription start site region 31472
Tssr31473 3 122082621 to 122082627 6 + TSS region transcription start site region 31473
Gm40138 3 122105484 to 122131814 26330 - lncRNA gene predicted gene, 40138
Gm43158 3 122125106 to 122227370 102264 - pseudogene predicted gene 43158
Tssr31474 3 122131988 to 122132002 14 + TSS region transcription start site region 31474
Gm43157 3 122152208 to 122152619 411 - pseudogene predicted gene 43157
Tssr31475 3 122173738 to 122173756 18 + TSS region transcription start site region 31475
Tssr31476 3 122173758 to 122173772 14 + TSS region transcription start site region 31476
Gm9361 3 122183653 to 122184984 1331 - pseudogene predicted gene 9361
Tssr35441 3 122195084 to 122195087 3 - TSS region transcription start site region 35441
Gm46822 3 122197406 to 122245445 48039 - lncRNA gene predicted gene, 46822
D3Jor1 3 122203846 to 122204596 750 DNA segment DNA segment, Chr 3, Barbara Jordan 1
Tssr1038 3 122211144 to 122211193 49 - TSS region transcription start site region 1038
Gm40137 3 122211428 to 122215304 3876 + lncRNA gene predicted gene, 40137
Gm4609 3 122230195 to 122231196 1001 - pseudogene predicted gene 4609
Gm22903 3 122232535 to 122232636 101 - miRNA gene predicted gene, 22903
Tssr35442 3 122239792 to 122239803 11 - TSS region transcription start site region 35442
Tssr31477 3 122243103 to 122243129 26 + TSS region transcription start site region 31477
Cpgi13765 3 122245217 to 122246614 1397 CpG island CpG island 13765
Tssr35443 3 122245219 to 122245229 10 - TSS region transcription start site region 35443
Tssr35444 3 122245302 to 122245332 30 - TSS region transcription start site region 35444
Tssr31478 3 122245476 to 122245550 74 + TSS region transcription start site region 31478
Gclm 3 122245557 to 122267215 21658 + protein coding gene glutamate-cysteine ligase, modifier subunit
Tssr31479 3 122245563 to 122245578 15 + TSS region transcription start site region 31479
Tssr31480 3 122245581 to 122245608 27 + TSS region transcription start site region 31480
Tssr31481 3 122245610 to 122245622 12 + TSS region transcription start site region 31481
Tssr31482 3 122245625 to 122245722 97 + TSS region transcription start site region 31482
Tssr1039 3 122245743 to 122245744 1 + TSS region transcription start site region 1039
Tssr31483 3 122245776 to 122245829 53 + TSS region transcription start site region 31483
Tssr31484 3 122245910 to 122245921 11 + TSS region transcription start site region 31484
Gm17494 3 122255958 to 122293720 37762 - unclassified non-coding RNA gene predicted gene, 17494
Tssr31485 3 122256686 to 122256691 5 + TSS region transcription start site region 31485
Gm6061 3 122256728 to 122257219 491 + pseudogene predicted gene 6061
Tssr31486 3 122259494 to 122259496 2 + TSS region transcription start site region 31486
Tssr31487 3 122261495 to 122261505 10 + TSS region transcription start site region 31487
Tssr31488 3 122262657 to 122262697 40 + TSS region transcription start site region 31488
Tssr31489 3 122266552 to 122266576 24 + TSS region transcription start site region 31489
Tssr31490 3 122268273 to 122268321 48 + TSS region transcription start site region 31490
Cpgi13766 3 122274023 to 122274868 845 CpG island CpG island 13766
Tssr31491 3 122274371 to 122274415 44 + TSS region transcription start site region 31491
Dnttip2 3 122274414 to 122285271 10857 + protein coding gene deoxynucleotidyltransferase, terminal, interacting protein 2
Tssr31492 3 122275553 to 122275580 27 + TSS region transcription start site region 31492
Cpgi13767 3 122292618 to 122294275 1657 CpG island CpG island 13767
n-TRtct2 3 122292948 to 122293032 84 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon TCT)
Gm40190 3 122293439 to 122303613 10174 + lincRNA gene predicted gene, 40190
Mir760 3 122293585 to 122293703 118 - miRNA gene microRNA 760
Tssr31493 3 122294150 to 122294160 10 + TSS region transcription start site region 31493
Gm40139 3 122321663 to 122331659 9996 + lncRNA gene predicted gene, 40139
Tssr35445 3 122372813 to 122372853 40 - TSS region transcription start site region 35445
Gm4610 3 122377097 to 122391811 14714 - antisense lncRNA gene predicted gene 4610
Tssr35446 3 122391227 to 122391267 40 - TSS region transcription start site region 35446
Tssr35447 3 122391842 to 122391862 20 - TSS region transcription start site region 35447
Tssr35448 3 122391993 to 122391998 5 - TSS region transcription start site region 35448
Cfq3 3 122395162 to 127426367 5031205 QTL conditioned fear QTL 3
Tssr35449 3 122408830 to 122408847 17 - TSS region transcription start site region 35449
Cpgi13768 3 122419553 to 122420603 1050 CpG island CpG island 13768
Tssr31494 3 122419739 to 122419754 15 + TSS region transcription start site region 31494
Tssr31495 3 122419772 to 122419787 15 + TSS region transcription start site region 31495
Bcar3 3 122419780 to 122530191 110411 + protein coding gene breast cancer anti-estrogen resistance 3
Tssr31496 3 122419793 to 122419806 13 + TSS region transcription start site region 31496
Tssr31497 3 122419866 to 122419872 6 + TSS region transcription start site region 31497
Tssr31498 3 122419985 to 122420000 15 + TSS region transcription start site region 31498
Gm42836 3 122426443 to 122459060 32617 - antisense lncRNA gene predicted gene 42836
Gm25153 3 122464727 to 122464882 155 + snRNA gene predicted gene, 25153
Gm34349 3 122476461 to 122483094 6633 - lncRNA gene predicted gene, 34349
Tssr31499 3 122483771 to 122483794 23 + TSS region transcription start site region 31499
Tssr31500 3 122504659 to 122504666 7 + TSS region transcription start site region 31500
Cpgi13769 3 122508015 to 122508455 440 CpG island CpG island 13769
Tssr31501 3 122510878 to 122510882 4 + TSS region transcription start site region 31501
Tssr31502 3 122511199 to 122511220 21 + TSS region transcription start site region 31502
Tssr31503 3 122511272 to 122511284 12 + TSS region transcription start site region 31503
Tssr31504 3 122511955 to 122511958 3 + TSS region transcription start site region 31504
Tssr31505 3 122512170 to 122512206 36 + TSS region transcription start site region 31505
Tssr35450 3 122512999 to 122513049 50 - TSS region transcription start site region 35450
Fnbp1l 3 122538719 to 122619714 80995 - protein coding gene formin binding protein 1-like
Tssr35451 3 122539544 to 122539549 5 - TSS region transcription start site region 35451
Mir7657 3 122541625 to 122541681 56 - miRNA gene microRNA 7657
Tssr35452 3 122551534 to 122551541 7 - TSS region transcription start site region 35452
Tssr35453 3 122552338 to 122552341 3 - TSS region transcription start site region 35453
Tssr35454 3 122559099 to 122559116 17 - TSS region transcription start site region 35454
Gm43569 3 122565050 to 122574740 9690 + antisense lncRNA gene predicted gene 43569
Tssr31506 3 122566719 to 122566739 20 + TSS region transcription start site region 31506
Tssr35455 3 122568785 to 122568808 23 - TSS region transcription start site region 35455
Tssr35456 3 122569710 to 122569749 39 - TSS region transcription start site region 35456
Gm42994 3 122574524 to 122577072 2548 - unclassified gene predicted gene 42994
Tssr35457 3 122590198 to 122590211 13 - TSS region transcription start site region 35457
Tssr35458 3 122612221 to 122612226 5 - TSS region transcription start site region 35458
Cpgi13770 3 122618384 to 122620364 1980 CpG island CpG island 13770
Tssr35459 3 122619442 to 122619463 21 - TSS region transcription start site region 35459
Tssr35460 3 122619663 to 122619680 17 - TSS region transcription start site region 35460
Tssr35461 3 122619683 to 122619698 15 - TSS region transcription start site region 35461
Tssr35462 3 122619712 to 122619723 11 - TSS region transcription start site region 35462
Tssr35463 3 122619737 to 122619748 11 - TSS region transcription start site region 35463
Gm43568 3 122622255 to 122630168 7913 - lincRNA gene predicted gene 43568
Tssr35464 3 122629743 to 122629766 23 - TSS region transcription start site region 35464
Gm5981 3 122632785 to 122633271 486 - pseudogene predicted gene 5981
Gm40140 3 122662220 to 122684080 21860 - lncRNA gene predicted gene, 40140
Tssr31507 3 122690754 to 122690755 1 + TSS region transcription start site region 31507
D3Mit80 3 122693359 to 122693549 190 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 80