Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:120586653-122476678

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229 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
tnyw 3 100556675 to 121708839 21152164 heritable phenotypic marker tiny wasting
Tssr31430 3 120595502 to 120595528 26 + TSS region transcription start site region 31430
Tssr31431 3 120595621 to 120595636 15 + TSS region transcription start site region 31431
6530403H02Rik 3 120604109 to 120886733 282624 - lincRNA gene RIKEN cDNA 6530403H02 gene
Gm25013 3 120609966 to 120610093 127 - snoRNA gene predicted gene, 25013
D3Mit316 3 120689010 to 120689134 124 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 316
Mors2 3 120689010 to 120689134 124 QTL modifier of obesity related sterility 2
Gm42927 3 120735721 to 120739561 3840 - pseudogene predicted gene 42927
Tssr35394 3 120886728 to 120886746 18 - TSS region transcription start site region 35394
Gm40133 3 120932130 to 120934711 2581 - lncRNA gene predicted gene, 40133
Gm43444 3 121020486 to 121020776 290 - unclassified gene predicted gene 43444
Tssr31432 3 121021472 to 121021479 7 + TSS region transcription start site region 31432
Gm42926 3 121029086 to 121029782 696 - unclassified gene predicted gene 42926
Tssr31433 3 121070984 to 121070985 1 + TSS region transcription start site region 31433
Rwdd3 3 121155398 to 121171695 16297 - protein coding gene RWD domain containing 3
Tssr35395 3 121159223 to 121159232 9 - TSS region transcription start site region 35395
Gm10652 3 121168656 to 121171277 2621 + unclassified gene predicted gene 10652
Cpgi13754 3 121171283 to 121171878 595 CpG island CpG island 13754
Tssr35396 3 121171678 to 121171717 39 - TSS region transcription start site region 35396
Gm5710 3 121180103 to 121181097 994 - pseudogene predicted gene 5710
Tmem56 3 121202008 to 121283108 81100 - protein coding gene transmembrane protein 56
Tssr35397 3 121205479 to 121205484 5 - TSS region transcription start site region 35397
Tssr35398 3 121206332 to 121206364 32 - TSS region transcription start site region 35398
Tssr35399 3 121232423 to 121232435 12 - TSS region transcription start site region 35399
Tssr35400 3 121249965 to 121249966 1 - TSS region transcription start site region 35400
Gm9353 3 121250134 to 121250737 603 - pseudogene predicted gene 9353
Cpgi13755 3 121262093 to 121263506 1413 CpG island CpG island 13755
Tssr35401 3 121262871 to 121262922 51 - TSS region transcription start site region 35401
Tssr1032 3 121262927 to 121262942 15 - TSS region transcription start site region 1032
Tssr35402 3 121262951 to 121262969 18 - TSS region transcription start site region 35402
Tssr35403 3 121263158 to 121263174 16 - TSS region transcription start site region 35403
Tssr35404 3 121263243 to 121263252 9 - TSS region transcription start site region 35404
Tssr35405 3 121263297 to 121263310 13 - TSS region transcription start site region 35405
Tssr35406 3 121263314 to 121263347 33 - TSS region transcription start site region 35406
Tssr35407 3 121277128 to 121277142 14 - TSS region transcription start site region 35407
Tssr35408 3 121277185 to 121277198 13 - TSS region transcription start site region 35408
Gm30517 3 121277524 to 121278295 771 + pseudogene predicted gene, 30517
Tssr35409 3 121283017 to 121283030 13 - TSS region transcription start site region 35409
Tssr35410 3 121283051 to 121283058 7 - TSS region transcription start site region 35410
Tssr35411 3 121283096 to 121283103 7 - TSS region transcription start site region 35411
Cpgi13756 3 121291482 to 121292289 807 CpG island CpG island 13756
Tssr35412 3 121291598 to 121291614 16 - TSS region transcription start site region 35412
Tssr31434 3 121291725 to 121291817 92 + TSS region transcription start site region 31434
Alg14 3 121291773 to 121363094 71321 + protein coding gene asparagine-linked glycosylation 14
Tssr31435 3 121291821 to 121291832 11 + TSS region transcription start site region 31435
Tssr31436 3 121291851 to 121291862 11 + TSS region transcription start site region 31436
Tssr31437 3 121299330 to 121299334 4 + TSS region transcription start site region 31437
Gm26027 3 121337692 to 121337959 267 + unclassified non-coding RNA gene predicted gene, 26027
Tssr35413 3 121343327 to 121343337 10 - TSS region transcription start site region 35413
Tssr35414 3 121343356 to 121343371 15 - TSS region transcription start site region 35414
Gm33310 3 121353585 to 121361268 7683 + lncRNA gene predicted gene, 33310
Gm33363 3 121369047 to 121388729 19682 + lncRNA gene predicted gene, 33363
Tssr31438 3 121369582 to 121369598 16 + TSS region transcription start site region 31438
Tssr31439 3 121369647 to 121369659 12 + TSS region transcription start site region 31439
Cpgi13757 3 121370461 to 121370618 157 CpG island CpG island 13757
Gm5711 3 121380259 to 121380679 420 - pseudogene predicted gene 5711
Tssr31440 3 121387794 to 121387800 6 + TSS region transcription start site region 31440
Gm40134 3 121389264 to 121392740 3476 + lncRNA gene predicted gene, 40134
Gm42928 3 121424236 to 121427574 3338 - unclassified gene predicted gene 42928
Cpgi13758 3 121425956 to 121427785 1829 CpG island CpG island 13758
Tssr31441 3 121426495 to 121426541 46 + TSS region transcription start site region 31441
Cnn3 3 121426541 to 121458205 31664 + protein coding gene calponin 3, acidic
Tssr31442 3 121426568 to 121426575 7 + TSS region transcription start site region 31442
Tssr35415 3 121427472 to 121427490 18 - TSS region transcription start site region 35415
Gm42929 3 121428046 to 121429331 1285 + unclassified gene predicted gene 42929
Tssr31443 3 121449680 to 121449694 14 + TSS region transcription start site region 31443
Tssr31444 3 121449708 to 121449735 27 + TSS region transcription start site region 31444
Tssr31445 3 121449747 to 121449764 17 + TSS region transcription start site region 31445
Tssr1033 3 121456664 to 121456670 6 + TSS region transcription start site region 1033
Tssr31446 3 121457332 to 121457352 20 + TSS region transcription start site region 31446
Slc44a3 3 121459528 to 121532344 72816 - protein coding gene solute carrier family 44, member 3
D3Mit42 3 121461791 to 121461943 152 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 42
D3Mit43 3 121461791 to 121461913 122 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 43
Tssr35416 3 121478778 to 121478789 11 - TSS region transcription start site region 35416
Tssr31447 3 121484736 to 121484744 8 + TSS region transcription start site region 31447
Gm38684 3 121530969 to 121532464 1495 + lncRNA gene predicted gene, 38684
Tssr31448 3 121531591 to 121531600 9 + TSS region transcription start site region 31448
Tssr31449 3 121531603 to 121531634 31 + TSS region transcription start site region 31449
Tssr31450 3 121531653 to 121531678 25 + TSS region transcription start site region 31450
Cpgi13759 3 121532053 to 121532477 424 CpG island CpG island 13759
Tssr35417 3 121532204 to 121532215 11 - TSS region transcription start site region 35417
Tssr35418 3 121532240 to 121532269 29 - TSS region transcription start site region 35418
Tssr35419 3 121532271 to 121532341 70 - TSS region transcription start site region 35419
Tssr31451 3 121532655 to 121532667 12 + TSS region transcription start site region 31451
A530020G20Rik 3 121532944 to 121536207 3263 + antisense lncRNA gene RIKEN cDNA A530020G20 gene
Gm40135 3 121545224 to 121562686 17462 + lncRNA gene predicted gene, 40135
Tssr1034 3 121547850 to 121547855 5 - TSS region transcription start site region 1034
Tssr35420 3 121548030 to 121548035 5 - TSS region transcription start site region 35420
Tssr35421 3 121548097 to 121548106 9 - TSS region transcription start site region 35421
Tssr35422 3 121548142 to 121548144 2 - TSS region transcription start site region 35422
Tssr35423 3 121548153 to 121548164 11 - TSS region transcription start site region 35423
Gm33547 3 121564153 to 121576164 12011 - lncRNA gene predicted gene, 33547
Tssr1035 3 121570993 to 121571007 14 + TSS region transcription start site region 1035
Tssr35424 3 121571605 to 121571615 10 - TSS region transcription start site region 35424
Tssr31452 3 121571816 to 121571839 23 + TSS region transcription start site region 31452
Tssr1036 3 121577493 to 121577507 14 + TSS region transcription start site region 1036
Gm33485 3 121580510 to 121606639 26129 - lncRNA gene predicted gene, 33485
Tssr1037 3 121589378 to 121589390 12 - TSS region transcription start site region 1037
Gm33708 3 121592922 to 121595092 2170 + lncRNA gene predicted gene, 33708
D3Mit251 3 121596511 to 121596642 131 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 251
Tssr35425 3 121616078 to 121616086 8 - TSS region transcription start site region 35425
A730020M07Rik 3 121634936 to 121643485 8549 - lincRNA gene RIKEN cDNA A730020M07 gene
4930432M17Rik 3 121670763 to 121682982 12219 + protein coding gene RIKEN cDNA 4930432M17 gene
Gm43608 3 121701501 to 121710246 8745 - lincRNA gene predicted gene 43608
D3Mit288 3 121708756 to 121708839 83 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 288
Gm43607 3 121711611 to 121712428 817 - lincRNA gene predicted gene 43607
Gm40136 3 121716591 to 121723428 6837 - lncRNA gene predicted gene, 40136
Gm43823 3 121721595 to 121723402 1807 - unclassified gene predicted gene 43823
Cpgi13760 3 121722966 to 121724316 1350 CpG island CpG island 13760
Tssr35426 3 121723395 to 121723409 14 - TSS region transcription start site region 35426
Tssr31453 3 121723515 to 121723534 19 + TSS region transcription start site region 31453
F3 3 121723537 to 121735048 11511 + protein coding gene coagulation factor III
Tssr31454 3 121723556 to 121723561 5 + TSS region transcription start site region 31454
Tssr31455 3 121723580 to 121723585 5 + TSS region transcription start site region 31455
Tssr31456 3 121723601 to 121723618 17 + TSS region transcription start site region 31456
Tssr31457 3 121724811 to 121724826 15 + TSS region transcription start site region 31457
Cpgi13761 3 121734213 to 121734364 151 CpG island CpG island 13761
Tssr31458 3 121734620 to 121734628 8 + TSS region transcription start site region 31458
Tssr31459 3 121734669 to 121734675 6 + TSS region transcription start site region 31459
Gm42777 3 121755044 to 121758646 3602 - unclassified gene predicted gene 42777
Tssr35427 3 121758544 to 121758555 11 - TSS region transcription start site region 35427
Abcd3 3 121758904 to 121815215 56311 - protein coding gene ATP-binding cassette, sub-family D (ALD), member 3
Gm43609 3 121762193 to 121764904 2711 - unclassified gene predicted gene 43609
4633401B06Rik 3 121787500 to 121788572 1072 - unclassified gene RIKEN cDNA 4633401B06 gene
Tssr35428 3 121787810 to 121787816 6 - TSS region transcription start site region 35428
Tssr35429 3 121814304 to 121814327 23 - TSS region transcription start site region 35429
Cpgi13762 3 121814520 to 121815627 1107 CpG island CpG island 13762
Tssr35430 3 121814794 to 121814816 22 - TSS region transcription start site region 35430
Tssr35431 3 121814919 to 121814951 32 - TSS region transcription start site region 35431
Tssr35432 3 121815137 to 121815153 16 - TSS region transcription start site region 35432
Tssr35433 3 121815160 to 121815209 49 - TSS region transcription start site region 35433
Tssr35434 3 121815212 to 121815225 13 - TSS region transcription start site region 35434
Tssr35435 3 121815415 to 121815506 91 - TSS region transcription start site region 35435
D3Mit347 3 121823065 to 121823170 105 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 347
Gm42776 3 121823444 to 121823849 405 - pseudogene predicted gene 42776
Tssr31460 3 121823928 to 121823931 3 + TSS region transcription start site region 31460
D3Mit317 3 121835044 to 121835167 123 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 317
Tssr35436 3 121838108 to 121838116 8 - TSS region transcription start site region 35436
Gm33924 3 121846094 to 121847153 1059 - lncRNA gene predicted gene, 33924
Tssr35437 3 121847086 to 121847090 4 - TSS region transcription start site region 35437
Tssr35438 3 121847148 to 121847176 28 - TSS region transcription start site region 35438
Tssr35439 3 121847189 to 121847198 9 - TSS region transcription start site region 35439
Gm33987 3 121851132 to 121855171 4039 + lncRNA gene predicted gene, 33987
Tssr31461 3 121851176 to 121851189 13 + TSS region transcription start site region 31461
Gm42593 3 121862842 to 121863218 376 + pseudogene predicted gene 42593
Tssr31462 3 121890770 to 121890777 7 + TSS region transcription start site region 31462
Gm34050 3 121896083 to 121903394 7311 - lncRNA gene predicted gene, 34050
Tssr35440 3 121900536 to 121900564 28 - TSS region transcription start site region 35440
Gm34119 3 121903583 to 121935839 32256 + lncRNA gene predicted gene, 34119
Gm46821 3 121926947 to 121936561 9614 - lncRNA gene predicted gene, 46821
Cpgi13763 3 121952953 to 121954049 1096 CpG island CpG island 13763
Arhgap29 3 121953072 to 122016157 63085 + protein coding gene Rho GTPase activating protein 29
Tssr31463 3 121953185 to 121953198 13 + TSS region transcription start site region 31463
Tssr31464 3 121953213 to 121953295 82 + TSS region transcription start site region 31464
Tssr31465 3 121953326 to 121953345 19 + TSS region transcription start site region 31465
Cpgi13764 3 121967777 to 121968152 375 CpG island CpG island 13764
Tssr31466 3 121967822 to 121967838 16 + TSS region transcription start site region 31466
Tssr31467 3 121989268 to 121989272 4 + TSS region transcription start site region 31467
Tssr31468 3 122000158 to 122000171 13 + TSS region transcription start site region 31468
Gm42544 3 122023830 to 122027071 3241 + unclassified gene predicted gene 42544
Tssr31469 3 122044428 to 122044469 41 + TSS region transcription start site region 31469
Abca4 3 122044443 to 122180123 135680 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 4
Tssr31470 3 122044471 to 122044491 20 + TSS region transcription start site region 31470
Tssr31471 3 122076925 to 122076970 45 + TSS region transcription start site region 31471
Tssr31472 3 122077148 to 122077159 11 + TSS region transcription start site region 31472
Tssr31473 3 122082621 to 122082627 6 + TSS region transcription start site region 31473
Gm40138 3 122105484 to 122131814 26330 - lncRNA gene predicted gene, 40138
Gm43158 3 122125106 to 122227370 102264 - pseudogene predicted gene 43158
Tssr31474 3 122131988 to 122132002 14 + TSS region transcription start site region 31474
Gm43157 3 122152208 to 122152619 411 - pseudogene predicted gene 43157
Tssr31475 3 122173738 to 122173756 18 + TSS region transcription start site region 31475
Tssr31476 3 122173758 to 122173772 14 + TSS region transcription start site region 31476
Gm9361 3 122183653 to 122184984 1331 - pseudogene predicted gene 9361
Tssr35441 3 122195084 to 122195087 3 - TSS region transcription start site region 35441
Gm46822 3 122197406 to 122245445 48039 - lncRNA gene predicted gene, 46822
D3Jor1 3 122203846 to 122204596 750 DNA segment DNA segment, Chr 3, Barbara Jordan 1
Tssr1038 3 122211144 to 122211193 49 - TSS region transcription start site region 1038
Gm40137 3 122211428 to 122215304 3876 + lncRNA gene predicted gene, 40137
Gm4609 3 122230195 to 122231196 1001 - pseudogene predicted gene 4609
Gm22903 3 122232535 to 122232636 101 - miRNA gene predicted gene, 22903
Tssr35442 3 122239792 to 122239803 11 - TSS region transcription start site region 35442
Tssr31477 3 122243103 to 122243129 26 + TSS region transcription start site region 31477
Cpgi13765 3 122245217 to 122246614 1397 CpG island CpG island 13765
Tssr35443 3 122245219 to 122245229 10 - TSS region transcription start site region 35443
Tssr35444 3 122245302 to 122245332 30 - TSS region transcription start site region 35444
Tssr31478 3 122245476 to 122245550 74 + TSS region transcription start site region 31478
Gclm 3 122245557 to 122267215 21658 + protein coding gene glutamate-cysteine ligase, modifier subunit
Tssr31479 3 122245563 to 122245578 15 + TSS region transcription start site region 31479
Tssr31480 3 122245581 to 122245608 27 + TSS region transcription start site region 31480
Tssr31481 3 122245610 to 122245622 12 + TSS region transcription start site region 31481
Tssr31482 3 122245625 to 122245722 97 + TSS region transcription start site region 31482
Tssr1039 3 122245743 to 122245744 1 + TSS region transcription start site region 1039
Tssr31483 3 122245776 to 122245829 53 + TSS region transcription start site region 31483
Tssr31484 3 122245910 to 122245921 11 + TSS region transcription start site region 31484
Gm17494 3 122255958 to 122293720 37762 - unclassified non-coding RNA gene predicted gene, 17494
Tssr31485 3 122256686 to 122256691 5 + TSS region transcription start site region 31485
Gm6061 3 122256728 to 122257219 491 + pseudogene predicted gene 6061
Tssr31486 3 122259494 to 122259496 2 + TSS region transcription start site region 31486
Tssr31487 3 122261495 to 122261505 10 + TSS region transcription start site region 31487
Tssr31488 3 122262657 to 122262697 40 + TSS region transcription start site region 31488