Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:118393820-121174949

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13748 3 118425803 to 118426370 567 CpG island CpG island 13748
Tssr31405 3 118430041 to 118430074 33 + TSS region transcription start site region 31405
Cpgi13749 3 118430242 to 118430600 358 CpG island CpG island 13749
Tssr31406 3 118430299 to 118430368 69 + TSS region transcription start site region 31406
Tssr31407 3 118430416 to 118430477 61 + TSS region transcription start site region 31407
Tssr31408 3 118431419 to 118431465 46 + TSS region transcription start site region 31408
Tssr31409 3 118431493 to 118431519 26 + TSS region transcription start site region 31409
Tssr31410 3 118431526 to 118431538 12 + TSS region transcription start site region 31410
Cpgi13750 3 118433472 to 118434010 538 CpG island CpG island 13750
Mir137 3 118433857 to 118433929 72 + miRNA gene microRNA 137
Tssr31411 3 118433933 to 118433942 9 + TSS region transcription start site region 31411
Cpgi13751 3 118434361 to 118434614 253 CpG island CpG island 13751
Gm24155 3 118434721 to 118434830 109 + miRNA gene predicted gene, 24155
Gm9916 3 118434770 to 118435997 1227 + lincRNA gene predicted gene 9916
D3Mit142 3 118442657 to 118442800 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 142
Tssr31412 3 118456319 to 118456325 6 + TSS region transcription start site region 31412
Gm26871 3 118504296 to 118539644 35348 + lncRNA gene predicted gene, 26871
Tssr31413 3 118522035 to 118522039 4 + TSS region transcription start site region 31413
Gm37773 3 118526151 to 118528270 2119 + unclassified gene predicted gene, 37773
Gm37928 3 118530883 to 118535013 4130 + unclassified gene predicted gene, 37928
Gm32444 3 118537021 to 118540531 3510 + unclassified non-coding RNA gene predicted gene, 32444
Cpgi13752 3 118562032 to 118562462 430 CpG island CpG island 13752
Dpyd 3 118562129 to 119432924 870795 + protein coding gene dihydropyrimidine dehydrogenase
Tssr31414 3 118562145 to 118562156 11 + TSS region transcription start site region 31414
Tssr31415 3 118562162 to 118562188 26 + TSS region transcription start site region 31415
Tssr31416 3 118609154 to 118609158 4 + TSS region transcription start site region 31416
D3Mit79 3 118620862 to 118621011 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 79
Tssr1030 3 118663510 to 118663512 2 + TSS region transcription start site region 1030
Tssr31417 3 118712959 to 118712986 27 + TSS region transcription start site region 31417
Tssr31418 3 118733620 to 118733625 5 + TSS region transcription start site region 31418
Tssr1031 3 118756290 to 118756291 1 + TSS region transcription start site region 1031
Tssr31419 3 118777534 to 118777535 1 + TSS region transcription start site region 31419
Tssr31420 3 118818161 to 118818181 20 + TSS region transcription start site region 31420
Gm43410 3 118868244 to 118870477 2233 + unclassified gene predicted gene 43410
Tssr31421 3 118980047 to 118980059 12 + TSS region transcription start site region 31421
Tssr31422 3 119084915 to 119084921 6 + TSS region transcription start site region 31422
Tssr31423 3 119085035 to 119085049 14 + TSS region transcription start site region 31423
D3Mit344 3 119152705 to 119152952 247 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 344
Tssr31424 3 119184126 to 119184130 4 + TSS region transcription start site region 31424
Tssr31425 3 119242276 to 119242278 2 + TSS region transcription start site region 31425
Gm32577 3 119437243 to 119440430 3187 - lncRNA gene predicted gene, 32577
Gm32632 3 119456800 to 119475096 18296 - lncRNA gene predicted gene, 32632
D3Mit356 3 119463751 to 119463925 174 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 356
D3Mit287 3 119471943 to 119472067 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 287
Gm40131 3 119483751 to 119490036 6285 - lncRNA gene predicted gene, 40131
Gm23432 3 119638744 to 119638874 130 - snoRNA gene predicted gene, 23432
Gm4332 3 119709516 to 119709861 345 + pseudogene predicted gene 4332
Tssr35384 3 119709610 to 119709613 3 - TSS region transcription start site region 35384
Ptbp2 3 119718741 to 119783799 65058 - protein coding gene polypyrimidine tract binding protein 2
Tssr35385 3 119720091 to 119720093 2 - TSS region transcription start site region 35385
Gm43300 3 119727748 to 119729790 2042 - unclassified gene predicted gene 43300
Tssr35386 3 119737719 to 119737723 4 - TSS region transcription start site region 35386
Tssr35387 3 119742695 to 119742712 17 - TSS region transcription start site region 35387
Gm42664 3 119743208 to 119746446 3238 - sense intronic lncRNA gene predicted gene 42664
Tssr35388 3 119745808 to 119745812 4 - TSS region transcription start site region 35388
Tssr35389 3 119749982 to 119749986 4 - TSS region transcription start site region 35389
Gm42804 3 119757338 to 119757515 177 + pseudogene predicted gene 42804
Cpgi13753 3 119782202 to 119783787 1585 CpG island CpG island 13753
Tssr31426 3 119782859 to 119782880 21 + TSS region transcription start site region 31426
Tssr35390 3 119783230 to 119783241 11 - TSS region transcription start site region 35390
Tssr35391 3 119783250 to 119783261 11 - TSS region transcription start site region 35391
Tssr35392 3 119783262 to 119783312 50 - TSS region transcription start site region 35392
Tssr35393 3 119783505 to 119783516 11 - TSS region transcription start site region 35393
Gm38548 3 119783820 to 119784949 1129 + lncRNA gene predicted gene, 38548
Gm24744 3 119831937 to 119832057 120 + miRNA gene predicted gene, 24744
Gm26137 3 119837904 to 119838024 120 + miRNA gene predicted gene, 26137
D3Mit144 3 119844605 to 119844742 137 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 144
Tssr31427 3 119903349 to 119903362 13 + TSS region transcription start site region 31427
Gm18384 3 119968731 to 119969538 807 + pseudogene predicted gene, 18384
Tssr31428 3 119987532 to 119987533 1 + TSS region transcription start site region 31428
Gm23733 3 120317884 to 120317989 105 - snRNA gene predicted gene, 23733
Tssr31429 3 120356591 to 120356593 2 + TSS region transcription start site region 31429
Tssr31430 3 120595502 to 120595528 26 + TSS region transcription start site region 31430
Tssr31431 3 120595621 to 120595636 15 + TSS region transcription start site region 31431
6530403H02Rik 3 120604109 to 120886733 282624 - lincRNA gene RIKEN cDNA 6530403H02 gene
Gm25013 3 120609966 to 120610093 127 - snoRNA gene predicted gene, 25013
D3Mit316 3 120689010 to 120689134 124 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 316
Mors2 3 120689010 to 120689134 124 QTL modifier of obesity related sterility 2
Gm42927 3 120735721 to 120739561 3840 - pseudogene predicted gene 42927
Tssr35394 3 120886728 to 120886746 18 - TSS region transcription start site region 35394
Gm40133 3 120932130 to 120934711 2581 - lncRNA gene predicted gene, 40133
Gm43444 3 121020486 to 121020776 290 - unclassified gene predicted gene 43444
Tssr31432 3 121021472 to 121021479 7 + TSS region transcription start site region 31432
Gm42926 3 121029086 to 121029782 696 - unclassified gene predicted gene 42926
Tssr31433 3 121070984 to 121070985 1 + TSS region transcription start site region 31433
Rwdd3 3 121155398 to 121171695 16297 - protein coding gene RWD domain containing 3
Tssr35395 3 121159223 to 121159232 9 - TSS region transcription start site region 35395
Gm10652 3 121168656 to 121171277 2621 + unclassified gene predicted gene 10652
Cpgi13754 3 121171283 to 121171878 595 CpG island CpG island 13754
Tssr35396 3 121171678 to 121171717 39 - TSS region transcription start site region 35396