Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:117752021-119325531

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snx7 3 117781647 to 117868936 87289 - protein coding gene sorting nexin 7
Tssr31403 3 117786659 to 117786667 8 + TSS region transcription start site region 31403
Tssr35380 3 117804805 to 117804809 4 - TSS region transcription start site region 35380
Tssr35381 3 117826089 to 117826094 5 - TSS region transcription start site region 35381
Gm24811 3 117848553 to 117848652 99 - miRNA gene predicted gene, 24811
Cpgi13747 3 117868500 to 117869251 751 CpG island CpG island 13747
Tssr35382 3 117868905 to 117868921 16 - TSS region transcription start site region 35382
Tssr35383 3 117868930 to 117868944 14 - TSS region transcription start site region 35383
Tssr31404 3 117869020 to 117869049 29 + TSS region transcription start site region 31404
Gm4321 3 117888573 to 117889014 441 - pseudogene predicted gene 4321
Gm32344 3 117965057 to 117993251 28194 + lncRNA gene predicted gene, 32344
4921521D15Rik 3 117969130 to 117973526 4396 + lincRNA gene RIKEN cDNA 4921521D15 gene
D3Jcs19 3 117998321 to 117998613 292 DNA segment DNA segment, Chr 3, John C. Schimenti 19
Cpgi13748 3 118425803 to 118426370 567 CpG island CpG island 13748
Tssr31405 3 118430041 to 118430074 33 + TSS region transcription start site region 31405
Cpgi13749 3 118430242 to 118430600 358 CpG island CpG island 13749
Tssr31406 3 118430299 to 118430368 69 + TSS region transcription start site region 31406
Tssr31407 3 118430416 to 118430477 61 + TSS region transcription start site region 31407
Tssr31408 3 118431419 to 118431465 46 + TSS region transcription start site region 31408
Tssr31409 3 118431493 to 118431519 26 + TSS region transcription start site region 31409
Tssr31410 3 118431526 to 118431538 12 + TSS region transcription start site region 31410
Cpgi13750 3 118433472 to 118434010 538 CpG island CpG island 13750
Mir137 3 118433857 to 118433929 72 + miRNA gene microRNA 137
Tssr31411 3 118433933 to 118433942 9 + TSS region transcription start site region 31411
Cpgi13751 3 118434361 to 118434614 253 CpG island CpG island 13751
Gm24155 3 118434721 to 118434830 109 + miRNA gene predicted gene, 24155
Gm9916 3 118434770 to 118435997 1227 + lincRNA gene predicted gene 9916
D3Mit142 3 118442657 to 118442800 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 142
Tssr31412 3 118456319 to 118456325 6 + TSS region transcription start site region 31412
Gm26871 3 118504296 to 118539644 35348 + lncRNA gene predicted gene, 26871
Tssr31413 3 118522035 to 118522039 4 + TSS region transcription start site region 31413
Gm37773 3 118526151 to 118528270 2119 + unclassified gene predicted gene, 37773
Gm37928 3 118530883 to 118535013 4130 + unclassified gene predicted gene, 37928
Gm32444 3 118537021 to 118540531 3510 + unclassified non-coding RNA gene predicted gene, 32444
Cpgi13752 3 118562032 to 118562462 430 CpG island CpG island 13752
Dpyd 3 118562129 to 119432924 870795 + protein coding gene dihydropyrimidine dehydrogenase
Tssr31414 3 118562145 to 118562156 11 + TSS region transcription start site region 31414
Tssr31415 3 118562162 to 118562188 26 + TSS region transcription start site region 31415
Tssr31416 3 118609154 to 118609158 4 + TSS region transcription start site region 31416
D3Mit79 3 118620862 to 118621011 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 79
Tssr1030 3 118663510 to 118663512 2 + TSS region transcription start site region 1030
Tssr31417 3 118712959 to 118712986 27 + TSS region transcription start site region 31417
Tssr31418 3 118733620 to 118733625 5 + TSS region transcription start site region 31418
Tssr1031 3 118756290 to 118756291 1 + TSS region transcription start site region 1031
Tssr31419 3 118777534 to 118777535 1 + TSS region transcription start site region 31419
Tssr31420 3 118818161 to 118818181 20 + TSS region transcription start site region 31420
Gm43410 3 118868244 to 118870477 2233 + unclassified gene predicted gene 43410
Tssr31421 3 118980047 to 118980059 12 + TSS region transcription start site region 31421
Tssr31422 3 119084915 to 119084921 6 + TSS region transcription start site region 31422
Tssr31423 3 119085035 to 119085049 14 + TSS region transcription start site region 31423
D3Mit344 3 119152705 to 119152952 247 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 344
Tssr31424 3 119184126 to 119184130 4 + TSS region transcription start site region 31424
Tssr31425 3 119242276 to 119242278 2 + TSS region transcription start site region 31425