Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:117051647-118598936

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700061I17Rik 3 117060522 to 117077765 17243 - lincRNA gene RIKEN cDNA 1700061I17 gene
Gm17896 3 117074112 to 117074815 703 - pseudogene predicted gene, 17896
Tssr35372 3 117077760 to 117077769 9 - TSS region transcription start site region 35372
Gm18430 3 117100833 to 117101505 672 - pseudogene predicted gene, 18430
Gm9632 3 117176019 to 117176661 642 + pseudogene predicted gene 9632
Gm19243 3 117222960 to 117223602 642 - pseudogene predicted gene, 19243
Gm32216 3 117234595 to 117256245 21650 + lncRNA gene predicted gene, 32216
Gm40130 3 117250987 to 117263149 12162 - lncRNA gene predicted gene, 40130
Gm42891 3 117255132 to 117255820 688 + lincRNA gene predicted gene 42891
Plppr4 3 117319145 to 117360876 41731 - protein coding gene phospholipid phosphatase related 4
Tssr35373 3 117321496 to 117321504 8 - TSS region transcription start site region 35373
Tssr35374 3 117321762 to 117321764 2 - TSS region transcription start site region 35374
Cpgi13744 3 117321973 to 117322665 692 CpG island CpG island 13744
Tssr35375 3 117322000 to 117322005 5 - TSS region transcription start site region 35375
Gm22408 3 117322941 to 117323005 64 + miRNA gene predicted gene, 22408
Tssr35376 3 117358369 to 117358373 4 - TSS region transcription start site region 35376
Cpgi13745 3 117359875 to 117360460 585 CpG island CpG island 13745
Tssr35377 3 117360164 to 117360227 63 - TSS region transcription start site region 35377
Tssr35378 3 117360370 to 117360441 71 - TSS region transcription start site region 35378
Tssr35379 3 117360445 to 117360465 20 - TSS region transcription start site region 35379
D3Mit299.1 3 117431918 to 117432032 114 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 299.1
D3Mit299 3 117432041 to 117432153 112 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 299
Tssr1029 3 117574834 to 117574858 24 + TSS region transcription start site region 1029
Plppr5 3 117574836 to 117689507 114671 + protein coding gene phospholipid phosphatase related 5
Cpgi13746 3 117574843 to 117576049 1206 CpG island CpG island 13746
Tssr31397 3 117574882 to 117574905 23 + TSS region transcription start site region 31397
Tssr31398 3 117575228 to 117575239 11 + TSS region transcription start site region 31398
Tssr31399 3 117575268 to 117575282 14 + TSS region transcription start site region 31399
Tssr31400 3 117575491 to 117575507 16 + TSS region transcription start site region 31400
Tssr31401 3 117575519 to 117575534 15 + TSS region transcription start site region 31401
Tssr31402 3 117634240 to 117634243 3 + TSS region transcription start site region 31402
D3Mit250 3 117668722 to 117668872 150 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 250
Snx7 3 117781647 to 117868936 87289 - protein coding gene sorting nexin 7
Tssr31403 3 117786659 to 117786667 8 + TSS region transcription start site region 31403
Tssr35380 3 117804805 to 117804809 4 - TSS region transcription start site region 35380
Tssr35381 3 117826089 to 117826094 5 - TSS region transcription start site region 35381
Gm24811 3 117848553 to 117848652 99 - miRNA gene predicted gene, 24811
Cpgi13747 3 117868500 to 117869251 751 CpG island CpG island 13747
Tssr35382 3 117868905 to 117868921 16 - TSS region transcription start site region 35382
Tssr35383 3 117868930 to 117868944 14 - TSS region transcription start site region 35383
Tssr31404 3 117869020 to 117869049 29 + TSS region transcription start site region 31404
Gm4321 3 117888573 to 117889014 441 - pseudogene predicted gene 4321
Gm32344 3 117965057 to 117993251 28194 + lncRNA gene predicted gene, 32344
4921521D15Rik 3 117969130 to 117973526 4396 + lincRNA gene RIKEN cDNA 4921521D15 gene
D3Jcs19 3 117998321 to 117998613 292 DNA segment DNA segment, Chr 3, John C. Schimenti 19
Cpgi13748 3 118425803 to 118426370 567 CpG island CpG island 13748
Tssr31405 3 118430041 to 118430074 33 + TSS region transcription start site region 31405
Cpgi13749 3 118430242 to 118430600 358 CpG island CpG island 13749
Tssr31406 3 118430299 to 118430368 69 + TSS region transcription start site region 31406
Tssr31407 3 118430416 to 118430477 61 + TSS region transcription start site region 31407
Tssr31408 3 118431419 to 118431465 46 + TSS region transcription start site region 31408
Tssr31409 3 118431493 to 118431519 26 + TSS region transcription start site region 31409
Tssr31410 3 118431526 to 118431538 12 + TSS region transcription start site region 31410
Cpgi13750 3 118433472 to 118434010 538 CpG island CpG island 13750
Mir137 3 118433857 to 118433929 72 + miRNA gene microRNA 137
Tssr31411 3 118433933 to 118433942 9 + TSS region transcription start site region 31411
Cpgi13751 3 118434361 to 118434614 253 CpG island CpG island 13751
Gm24155 3 118434721 to 118434830 109 + miRNA gene predicted gene, 24155
Gm9916 3 118434770 to 118435997 1227 + lincRNA gene predicted gene 9916
D3Mit142 3 118442657 to 118442800 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 142
Tssr31412 3 118456319 to 118456325 6 + TSS region transcription start site region 31412
Gm26871 3 118504296 to 118539644 35348 + lncRNA gene predicted gene, 26871
Tssr31413 3 118522035 to 118522039 4 + TSS region transcription start site region 31413
Gm37773 3 118526151 to 118528270 2119 + unclassified gene predicted gene, 37773
Gm37928 3 118530883 to 118535013 4130 + unclassified gene predicted gene, 37928
Gm32444 3 118537021 to 118540531 3510 + unclassified non-coding RNA gene predicted gene, 32444
Cpgi13752 3 118562032 to 118562462 430 CpG island CpG island 13752
Dpyd 3 118562129 to 119432924 870795 + protein coding gene dihydropyrimidine dehydrogenase
Tssr31414 3 118562145 to 118562156 11 + TSS region transcription start site region 31414
Tssr31415 3 118562162 to 118562188 26 + TSS region transcription start site region 31415