Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:116958722-118378872

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Palmd 3 116918262 to 116968952 50690 - protein coding gene palmdelphin
Gm32148 3 116953110 to 116960082 6972 + lncRNA gene predicted gene, 32148
4930455H04Rik 3 116968267 to 116984406 16139 + protein coding gene RIKEN cDNA 4930455H04 gene
Tssr35360 3 116968538 to 116968551 13 - TSS region transcription start site region 35360
Tssr35361 3 116968563 to 116968568 5 - TSS region transcription start site region 35361
Cpgi13743 3 116968593 to 116968870 277 CpG island CpG island 13743
Tssr35362 3 116968628 to 116968633 5 - TSS region transcription start site region 35362
Tssr35363 3 116968676 to 116968692 16 - TSS region transcription start site region 35363
Tssr35364 3 116968712 to 116968768 56 - TSS region transcription start site region 35364
Tssr35365 3 116968772 to 116968789 17 - TSS region transcription start site region 35365
Tssr35366 3 116968790 to 116968815 25 - TSS region transcription start site region 35366
Tssr35367 3 116968827 to 116968834 7 - TSS region transcription start site region 35367
Tssr35368 3 116968928 to 116968938 10 - TSS region transcription start site region 35368
Tssr35369 3 116968969 to 116969004 35 - TSS region transcription start site region 35369
Tssr35370 3 116969012 to 116969027 15 - TSS region transcription start site region 35370
Tssr35371 3 116969514 to 116969523 9 - TSS region transcription start site region 35371
Gm9332 3 116998857 to 116999586 729 - pseudogene predicted gene 9332
1700061I17Rik 3 117060522 to 117077765 17243 - lincRNA gene RIKEN cDNA 1700061I17 gene
Gm17896 3 117074112 to 117074815 703 - pseudogene predicted gene, 17896
Tssr35372 3 117077760 to 117077769 9 - TSS region transcription start site region 35372
Gm18430 3 117100833 to 117101505 672 - pseudogene predicted gene, 18430
Gm9632 3 117176019 to 117176661 642 + pseudogene predicted gene 9632
Gm19243 3 117222960 to 117223602 642 - pseudogene predicted gene, 19243
Gm32216 3 117234595 to 117256245 21650 + lncRNA gene predicted gene, 32216
Gm40130 3 117250987 to 117263149 12162 - lncRNA gene predicted gene, 40130
Gm42891 3 117255132 to 117255820 688 + lincRNA gene predicted gene 42891
Plppr4 3 117319145 to 117360876 41731 - protein coding gene phospholipid phosphatase related 4
Tssr35373 3 117321496 to 117321504 8 - TSS region transcription start site region 35373
Tssr35374 3 117321762 to 117321764 2 - TSS region transcription start site region 35374
Cpgi13744 3 117321973 to 117322665 692 CpG island CpG island 13744
Tssr35375 3 117322000 to 117322005 5 - TSS region transcription start site region 35375
Gm22408 3 117322941 to 117323005 64 + miRNA gene predicted gene, 22408
Tssr35376 3 117358369 to 117358373 4 - TSS region transcription start site region 35376
Cpgi13745 3 117359875 to 117360460 585 CpG island CpG island 13745
Tssr35377 3 117360164 to 117360227 63 - TSS region transcription start site region 35377
Tssr35378 3 117360370 to 117360441 71 - TSS region transcription start site region 35378
Tssr35379 3 117360445 to 117360465 20 - TSS region transcription start site region 35379
D3Mit299.1 3 117431918 to 117432032 114 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 299.1
D3Mit299 3 117432041 to 117432153 112 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 299
Tssr1029 3 117574834 to 117574858 24 + TSS region transcription start site region 1029
Plppr5 3 117574836 to 117689507 114671 + protein coding gene phospholipid phosphatase related 5
Cpgi13746 3 117574843 to 117576049 1206 CpG island CpG island 13746
Tssr31397 3 117574882 to 117574905 23 + TSS region transcription start site region 31397
Tssr31398 3 117575228 to 117575239 11 + TSS region transcription start site region 31398
Tssr31399 3 117575268 to 117575282 14 + TSS region transcription start site region 31399
Tssr31400 3 117575491 to 117575507 16 + TSS region transcription start site region 31400
Tssr31401 3 117575519 to 117575534 15 + TSS region transcription start site region 31401
Tssr31402 3 117634240 to 117634243 3 + TSS region transcription start site region 31402
D3Mit250 3 117668722 to 117668872 150 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 250
Snx7 3 117781647 to 117868936 87289 - protein coding gene sorting nexin 7
Tssr31403 3 117786659 to 117786667 8 + TSS region transcription start site region 31403
Tssr35380 3 117804805 to 117804809 4 - TSS region transcription start site region 35380
Tssr35381 3 117826089 to 117826094 5 - TSS region transcription start site region 35381
Gm24811 3 117848553 to 117848652 99 - miRNA gene predicted gene, 24811
Cpgi13747 3 117868500 to 117869251 751 CpG island CpG island 13747
Tssr35382 3 117868905 to 117868921 16 - TSS region transcription start site region 35382
Tssr35383 3 117868930 to 117868944 14 - TSS region transcription start site region 35383
Tssr31404 3 117869020 to 117869049 29 + TSS region transcription start site region 31404
Gm4321 3 117888573 to 117889014 441 - pseudogene predicted gene 4321
Gm32344 3 117965057 to 117993251 28194 + lncRNA gene predicted gene, 32344
4921521D15Rik 3 117969130 to 117973526 4396 + lincRNA gene RIKEN cDNA 4921521D15 gene
D3Jcs19 3 117998321 to 117998613 292 DNA segment DNA segment, Chr 3, John C. Schimenti 19