Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:116810522-117327765

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43520 3 116818815 to 116818978 163 + unclassified gene predicted gene 43520
Gm43521 3 116822294 to 116822548 254 - unclassified gene predicted gene 43521
Gm40127 3 116823005 to 116829790 6785 + lncRNA gene predicted gene, 40127
Tssr31366 3 116829526 to 116829544 18 + TSS region transcription start site region 31366
Gm40128 3 116835357 to 116841513 6156 - lncRNA gene predicted gene, 40128
Tssr31367 3 116844543 to 116844547 4 + TSS region transcription start site region 31367
Gm29736 3 116844579 to 116844958 379 + pseudogene predicted gene, 29736
Tssr31368 3 116845145 to 116845163 18 + TSS region transcription start site region 31368
Gm43542 3 116846946 to 116847324 378 + pseudogene predicted gene 43542
Tssr31369 3 116859557 to 116859568 11 + TSS region transcription start site region 31369
Frrs1 3 116859567 to 116907714 48147 + protein coding gene ferric-chelate reductase 1
Tssr31370 3 116859574 to 116859591 17 + TSS region transcription start site region 31370
Tssr31371 3 116859593 to 116859605 12 + TSS region transcription start site region 31371
Cpgi13741 3 116861597 to 116861893 296 CpG island CpG island 13741
Tssr31372 3 116861641 to 116861695 54 + TSS region transcription start site region 31372
Tssr35358 3 116861810 to 116861821 11 - TSS region transcription start site region 35358
Tssr35359 3 116861825 to 116861849 24 - TSS region transcription start site region 35359
Tssr31373 3 116861910 to 116861928 18 + TSS region transcription start site region 31373
Tssr31374 3 116862820 to 116862824 4 + TSS region transcription start site region 31374
Tssr31375 3 116865621 to 116865638 17 + TSS region transcription start site region 31375
Tssr31376 3 116866165 to 116866202 37 + TSS region transcription start site region 31376
9030201C23Rik 3 116869470 to 116870833 1363 unclassified gene RIKEN cDNA 9030201C23 gene
Tssr31377 3 116870433 to 116870446 13 + TSS region transcription start site region 31377
Tssr31378 3 116878497 to 116878527 30 + TSS region transcription start site region 31378
Tssr31379 3 116885827 to 116885840 13 + TSS region transcription start site region 31379
Tssr31380 3 116885958 to 116885990 32 + TSS region transcription start site region 31380
Tssr31381 3 116886130 to 116886145 15 + TSS region transcription start site region 31381
Tssr31382 3 116886171 to 116886183 12 + TSS region transcription start site region 31382
Tssr31383 3 116886206 to 116886213 7 + TSS region transcription start site region 31383
Tssr31384 3 116890638 to 116890643 5 + TSS region transcription start site region 31384
Tssr31385 3 116890866 to 116890908 42 + TSS region transcription start site region 31385
Tssr31386 3 116894892 to 116894897 5 + TSS region transcription start site region 31386
Tssr31387 3 116899671 to 116899687 16 + TSS region transcription start site region 31387
Tssr31388 3 116899802 to 116899822 20 + TSS region transcription start site region 31388
Tssr31389 3 116899837 to 116899859 22 + TSS region transcription start site region 31389
Tssr31390 3 116899874 to 116899938 64 + TSS region transcription start site region 31390
Tssr31391 3 116903577 to 116903606 29 + TSS region transcription start site region 31391
Tssr31392 3 116903663 to 116903688 25 + TSS region transcription start site region 31392
Tssr31393 3 116903697 to 116903715 18 + TSS region transcription start site region 31393
Tssr31394 3 116903719 to 116903752 33 + TSS region transcription start site region 31394
Tssr31395 3 116904364 to 116904398 34 + TSS region transcription start site region 31395
Cpgi13742 3 116906123 to 116906332 209 CpG island CpG island 13742
Tssr31396 3 116906373 to 116906378 5 + TSS region transcription start site region 31396
Palmd 3 116918262 to 116968952 50690 - protein coding gene palmdelphin
Tssr1028 3 116927266 to 116927275 9 - TSS region transcription start site region 1028
Gm42892 3 116940358 to 116944330 3972 - unclassified gene predicted gene 42892
Gm32148 3 116953110 to 116960082 6972 + lncRNA gene predicted gene, 32148
4930455H04Rik 3 116968267 to 116984406 16139 + protein coding gene RIKEN cDNA 4930455H04 gene
Tssr35360 3 116968538 to 116968551 13 - TSS region transcription start site region 35360
Tssr35361 3 116968563 to 116968568 5 - TSS region transcription start site region 35361
Cpgi13743 3 116968593 to 116968870 277 CpG island CpG island 13743
Tssr35362 3 116968628 to 116968633 5 - TSS region transcription start site region 35362
Tssr35363 3 116968676 to 116968692 16 - TSS region transcription start site region 35363
Tssr35364 3 116968712 to 116968768 56 - TSS region transcription start site region 35364
Tssr35365 3 116968772 to 116968789 17 - TSS region transcription start site region 35365
Tssr35366 3 116968790 to 116968815 25 - TSS region transcription start site region 35366
Tssr35367 3 116968827 to 116968834 7 - TSS region transcription start site region 35367
Tssr35368 3 116968928 to 116968938 10 - TSS region transcription start site region 35368
Tssr35369 3 116968969 to 116969004 35 - TSS region transcription start site region 35369
Tssr35370 3 116969012 to 116969027 15 - TSS region transcription start site region 35370
Tssr35371 3 116969514 to 116969523 9 - TSS region transcription start site region 35371
Gm9332 3 116998857 to 116999586 729 - pseudogene predicted gene 9332
1700061I17Rik 3 117060522 to 117077765 17243 - lincRNA gene RIKEN cDNA 1700061I17 gene
Gm17896 3 117074112 to 117074815 703 - pseudogene predicted gene, 17896
Tssr35372 3 117077760 to 117077769 9 - TSS region transcription start site region 35372
Gm18430 3 117100833 to 117101505 672 - pseudogene predicted gene, 18430
Gm9632 3 117176019 to 117176661 642 + pseudogene predicted gene 9632
Gm19243 3 117222960 to 117223602 642 - pseudogene predicted gene, 19243
Gm32216 3 117234595 to 117256245 21650 + lncRNA gene predicted gene, 32216
Gm40130 3 117250987 to 117263149 12162 - lncRNA gene predicted gene, 40130
Gm42891 3 117255132 to 117255820 688 + lincRNA gene predicted gene 42891
Plppr4 3 117319145 to 117360876 41731 - protein coding gene phospholipid phosphatase related 4
Tssr35373 3 117321496 to 117321504 8 - TSS region transcription start site region 35373
Tssr35374 3 117321762 to 117321764 2 - TSS region transcription start site region 35374
Cpgi13744 3 117321973 to 117322665 692 CpG island CpG island 13744
Tssr35375 3 117322000 to 117322005 5 - TSS region transcription start site region 35375
Gm22408 3 117322941 to 117323005 64 + miRNA gene predicted gene, 22408