Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:116573722-118763872

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203 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrc39 3 116562973 to 116583134 20161 + protein coding gene leucine rich repeat containing 39
Gm42940 3 116572063 to 116574424 2361 - unclassified gene predicted gene 42940
Trmt13 3 116581093 to 116614587 33494 - protein coding gene tRNA methyltransferase 13
Cpgi13737 3 116594476 to 116595532 1056 CpG island CpG island 13737
Tssr35316 3 116594816 to 116594841 25 - TSS region transcription start site region 35316
Tssr35317 3 116594848 to 116594898 50 - TSS region transcription start site region 35317
Tssr31360 3 116594959 to 116595031 72 + TSS region transcription start site region 31360
Sass6 3 116594982 to 116631004 36022 + protein coding gene SAS-6 centriolar assembly protein
Tssr31361 3 116598187 to 116598204 17 + TSS region transcription start site region 31361
Tssr31362 3 116598212 to 116598234 22 + TSS region transcription start site region 31362
Gm42893 3 116629173 to 116630984 1811 - antisense lncRNA gene predicted gene 42893
Tssr31363 3 116629262 to 116629266 4 + TSS region transcription start site region 31363
Mfsd14a 3 116631164 to 116662677 31513 - protein coding gene major facilitator superfamily domain containing 14A
Gm42457 3 116631671 to 116632209 538 + antisense lncRNA gene predicted gene 42457
Tssr35318 3 116634973 to 116634984 11 - TSS region transcription start site region 35318
Tssr35319 3 116634990 to 116635024 34 - TSS region transcription start site region 35319
Gm43191 3 116641902 to 116681260 39358 - protein coding gene predicted gene 43191
Tssr35320 3 116645684 to 116645714 30 - TSS region transcription start site region 35320
Tssr35321 3 116645718 to 116645730 12 - TSS region transcription start site region 35321
Tssr35322 3 116655570 to 116655575 5 - TSS region transcription start site region 35322
Tssr35323 3 116659335 to 116659341 6 - TSS region transcription start site region 35323
Tssr31364 3 116661761 to 116661775 14 + TSS region transcription start site region 31364
Cpgi13738 3 116661770 to 116663028 1258 CpG island CpG island 13738
Tssr35324 3 116662092 to 116662104 12 - TSS region transcription start site region 35324
Tssr35325 3 116662270 to 116662339 69 - TSS region transcription start site region 35325
Tssr35326 3 116662537 to 116662548 11 - TSS region transcription start site region 35326
Tssr35327 3 116662554 to 116662570 16 - TSS region transcription start site region 35327
Tssr35328 3 116662571 to 116662584 13 - TSS region transcription start site region 35328
Tssr35329 3 116662590 to 116662641 51 - TSS region transcription start site region 35329
Tssr35330 3 116662643 to 116662654 11 - TSS region transcription start site region 35330
4930512P04Rik 3 116663732 to 116664155 423 + lincRNA gene RIKEN cDNA 4930512P04 gene
Slc35a3 3 116669470 to 116712831 43361 - protein coding gene solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
Gm40126 3 116690388 to 116693380 2992 - lncRNA gene predicted gene, 40126
Cpgi13739 3 116711636 to 116712509 873 CpG island CpG island 13739
Tssr35331 3 116711775 to 116711784 9 - TSS region transcription start site region 35331
Tssr35332 3 116711820 to 116711847 27 - TSS region transcription start site region 35332
Tssr35333 3 116711849 to 116711865 16 - TSS region transcription start site region 35333
Tssr35334 3 116711866 to 116711882 16 - TSS region transcription start site region 35334
Tssr35335 3 116712198 to 116712240 42 - TSS region transcription start site region 35335
Tssr35336 3 116712241 to 116712269 28 - TSS region transcription start site region 35336
Tssr35337 3 116712460 to 116712510 50 - TSS region transcription start site region 35337
Tssr35338 3 116712644 to 116712655 11 - TSS region transcription start site region 35338
Tssr35339 3 116712696 to 116712723 27 - TSS region transcription start site region 35339
Agl 3 116739999 to 116808166 68167 - protein coding gene amylo-1,6-glucosidase, 4-alpha-glucanotransferase
D3Mit314 3 116782995 to 116783194 199 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 314
Tssr35340 3 116804471 to 116804474 3 - TSS region transcription start site region 35340
Tssr35341 3 116807688 to 116807693 5 - TSS region transcription start site region 35341
Tssr35342 3 116807706 to 116807711 5 - TSS region transcription start site region 35342
Cpgi13740 3 116807724 to 116808695 971 CpG island CpG island 13740
Tssr35343 3 116807727 to 116807730 3 - TSS region transcription start site region 35343
Tssr35344 3 116807733 to 116807755 22 - TSS region transcription start site region 35344
Tssr35345 3 116807763 to 116807779 16 - TSS region transcription start site region 35345
Tssr35346 3 116807782 to 116807789 7 - TSS region transcription start site region 35346
Tssr35347 3 116807802 to 116807866 64 - TSS region transcription start site region 35347
Tssr35348 3 116807880 to 116807889 9 - TSS region transcription start site region 35348
Tssr35349 3 116807903 to 116807914 11 - TSS region transcription start site region 35349
Tssr35350 3 116807933 to 116807961 28 - TSS region transcription start site region 35350
Tssr35351 3 116807969 to 116807976 7 - TSS region transcription start site region 35351
Tssr35352 3 116807982 to 116807998 16 - TSS region transcription start site region 35352
Tssr35353 3 116808051 to 116808061 10 - TSS region transcription start site region 35353
Tssr35354 3 116808067 to 116808136 69 - TSS region transcription start site region 35354
Tssr35355 3 116808137 to 116808148 11 - TSS region transcription start site region 35355
Tssr35356 3 116808178 to 116808198 20 - TSS region transcription start site region 35356
Tssr35357 3 116808218 to 116808268 50 - TSS region transcription start site region 35357
Tssr31365 3 116808262 to 116808285 23 + TSS region transcription start site region 31365
Gm43520 3 116818815 to 116818978 163 + unclassified gene predicted gene 43520
Gm43521 3 116822294 to 116822548 254 - unclassified gene predicted gene 43521
Gm40127 3 116823005 to 116829790 6785 + lncRNA gene predicted gene, 40127
Tssr31366 3 116829526 to 116829544 18 + TSS region transcription start site region 31366
Gm40128 3 116835357 to 116841513 6156 - lncRNA gene predicted gene, 40128
Tssr31367 3 116844543 to 116844547 4 + TSS region transcription start site region 31367
Gm29736 3 116844579 to 116844958 379 + pseudogene predicted gene, 29736
Tssr31368 3 116845145 to 116845163 18 + TSS region transcription start site region 31368
Gm43542 3 116846946 to 116847324 378 + pseudogene predicted gene 43542
Tssr31369 3 116859557 to 116859568 11 + TSS region transcription start site region 31369
Frrs1 3 116859567 to 116907714 48147 + protein coding gene ferric-chelate reductase 1
Tssr31370 3 116859574 to 116859591 17 + TSS region transcription start site region 31370
Tssr31371 3 116859593 to 116859605 12 + TSS region transcription start site region 31371
Cpgi13741 3 116861597 to 116861893 296 CpG island CpG island 13741
Tssr31372 3 116861641 to 116861695 54 + TSS region transcription start site region 31372
Tssr35358 3 116861810 to 116861821 11 - TSS region transcription start site region 35358
Tssr35359 3 116861825 to 116861849 24 - TSS region transcription start site region 35359
Tssr31373 3 116861910 to 116861928 18 + TSS region transcription start site region 31373
Tssr31374 3 116862820 to 116862824 4 + TSS region transcription start site region 31374
Tssr31375 3 116865621 to 116865638 17 + TSS region transcription start site region 31375
Tssr31376 3 116866165 to 116866202 37 + TSS region transcription start site region 31376
9030201C23Rik 3 116869470 to 116870833 1363 unclassified gene RIKEN cDNA 9030201C23 gene
Tssr31377 3 116870433 to 116870446 13 + TSS region transcription start site region 31377
Tssr31378 3 116878497 to 116878527 30 + TSS region transcription start site region 31378
Tssr31379 3 116885827 to 116885840 13 + TSS region transcription start site region 31379
Tssr31380 3 116885958 to 116885990 32 + TSS region transcription start site region 31380
Tssr31381 3 116886130 to 116886145 15 + TSS region transcription start site region 31381
Tssr31382 3 116886171 to 116886183 12 + TSS region transcription start site region 31382
Tssr31383 3 116886206 to 116886213 7 + TSS region transcription start site region 31383
Tssr31384 3 116890638 to 116890643 5 + TSS region transcription start site region 31384
Tssr31385 3 116890866 to 116890908 42 + TSS region transcription start site region 31385
Tssr31386 3 116894892 to 116894897 5 + TSS region transcription start site region 31386
Tssr31387 3 116899671 to 116899687 16 + TSS region transcription start site region 31387
Tssr31388 3 116899802 to 116899822 20 + TSS region transcription start site region 31388
Tssr31389 3 116899837 to 116899859 22 + TSS region transcription start site region 31389
Tssr31390 3 116899874 to 116899938 64 + TSS region transcription start site region 31390
Tssr31391 3 116903577 to 116903606 29 + TSS region transcription start site region 31391
Tssr31392 3 116903663 to 116903688 25 + TSS region transcription start site region 31392
Tssr31393 3 116903697 to 116903715 18 + TSS region transcription start site region 31393
Tssr31394 3 116903719 to 116903752 33 + TSS region transcription start site region 31394
Tssr31395 3 116904364 to 116904398 34 + TSS region transcription start site region 31395
Cpgi13742 3 116906123 to 116906332 209 CpG island CpG island 13742
Tssr31396 3 116906373 to 116906378 5 + TSS region transcription start site region 31396
Palmd 3 116918262 to 116968952 50690 - protein coding gene palmdelphin
Tssr1028 3 116927266 to 116927275 9 - TSS region transcription start site region 1028
Gm42892 3 116940358 to 116944330 3972 - unclassified gene predicted gene 42892
Gm32148 3 116953110 to 116960082 6972 + lncRNA gene predicted gene, 32148
4930455H04Rik 3 116968267 to 116984406 16139 + protein coding gene RIKEN cDNA 4930455H04 gene
Tssr35360 3 116968538 to 116968551 13 - TSS region transcription start site region 35360
Tssr35361 3 116968563 to 116968568 5 - TSS region transcription start site region 35361
Cpgi13743 3 116968593 to 116968870 277 CpG island CpG island 13743
Tssr35362 3 116968628 to 116968633 5 - TSS region transcription start site region 35362
Tssr35363 3 116968676 to 116968692 16 - TSS region transcription start site region 35363
Tssr35364 3 116968712 to 116968768 56 - TSS region transcription start site region 35364
Tssr35365 3 116968772 to 116968789 17 - TSS region transcription start site region 35365
Tssr35366 3 116968790 to 116968815 25 - TSS region transcription start site region 35366
Tssr35367 3 116968827 to 116968834 7 - TSS region transcription start site region 35367
Tssr35368 3 116968928 to 116968938 10 - TSS region transcription start site region 35368
Tssr35369 3 116968969 to 116969004 35 - TSS region transcription start site region 35369
Tssr35370 3 116969012 to 116969027 15 - TSS region transcription start site region 35370
Tssr35371 3 116969514 to 116969523 9 - TSS region transcription start site region 35371
Gm9332 3 116998857 to 116999586 729 - pseudogene predicted gene 9332
1700061I17Rik 3 117060522 to 117077765 17243 - lincRNA gene RIKEN cDNA 1700061I17 gene
Gm17896 3 117074112 to 117074815 703 - pseudogene predicted gene, 17896
Tssr35372 3 117077760 to 117077769 9 - TSS region transcription start site region 35372
Gm18430 3 117100833 to 117101505 672 - pseudogene predicted gene, 18430
Gm9632 3 117176019 to 117176661 642 + pseudogene predicted gene 9632
Gm19243 3 117222960 to 117223602 642 - pseudogene predicted gene, 19243
Gm32216 3 117234595 to 117256245 21650 + lncRNA gene predicted gene, 32216
Gm40130 3 117250987 to 117263149 12162 - lncRNA gene predicted gene, 40130
Gm42891 3 117255132 to 117255820 688 + lincRNA gene predicted gene 42891
Plppr4 3 117319145 to 117360876 41731 - protein coding gene phospholipid phosphatase related 4
Tssr35373 3 117321496 to 117321504 8 - TSS region transcription start site region 35373
Tssr35374 3 117321762 to 117321764 2 - TSS region transcription start site region 35374
Cpgi13744 3 117321973 to 117322665 692 CpG island CpG island 13744
Tssr35375 3 117322000 to 117322005 5 - TSS region transcription start site region 35375
Gm22408 3 117322941 to 117323005 64 + miRNA gene predicted gene, 22408
Tssr35376 3 117358369 to 117358373 4 - TSS region transcription start site region 35376
Cpgi13745 3 117359875 to 117360460 585 CpG island CpG island 13745
Tssr35377 3 117360164 to 117360227 63 - TSS region transcription start site region 35377
Tssr35378 3 117360370 to 117360441 71 - TSS region transcription start site region 35378
Tssr35379 3 117360445 to 117360465 20 - TSS region transcription start site region 35379
D3Mit299.1 3 117431918 to 117432032 114 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 299.1
D3Mit299 3 117432041 to 117432153 112 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 299
Tssr1029 3 117574834 to 117574858 24 + TSS region transcription start site region 1029
Plppr5 3 117574836 to 117689507 114671 + protein coding gene phospholipid phosphatase related 5
Cpgi13746 3 117574843 to 117576049 1206 CpG island CpG island 13746
Tssr31397 3 117574882 to 117574905 23 + TSS region transcription start site region 31397
Tssr31398 3 117575228 to 117575239 11 + TSS region transcription start site region 31398
Tssr31399 3 117575268 to 117575282 14 + TSS region transcription start site region 31399
Tssr31400 3 117575491 to 117575507 16 + TSS region transcription start site region 31400
Tssr31401 3 117575519 to 117575534 15 + TSS region transcription start site region 31401
Tssr31402 3 117634240 to 117634243 3 + TSS region transcription start site region 31402
D3Mit250 3 117668722 to 117668872 150 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 250
Snx7 3 117781647 to 117868936 87289 - protein coding gene sorting nexin 7
Tssr31403 3 117786659 to 117786667 8 + TSS region transcription start site region 31403
Tssr35380 3 117804805 to 117804809 4 - TSS region transcription start site region 35380
Tssr35381 3 117826089 to 117826094 5 - TSS region transcription start site region 35381
Gm24811 3 117848553 to 117848652 99 - miRNA gene predicted gene, 24811
Cpgi13747 3 117868500 to 117869251 751 CpG island CpG island 13747
Tssr35382 3 117868905 to 117868921 16 - TSS region transcription start site region 35382
Tssr35383 3 117868930 to 117868944 14 - TSS region transcription start site region 35383
Tssr31404 3 117869020 to 117869049 29 + TSS region transcription start site region 31404
Gm4321 3 117888573 to 117889014 441 - pseudogene predicted gene 4321
Gm32344 3 117965057 to 117993251 28194 + lncRNA gene predicted gene, 32344
4921521D15Rik 3 117969130 to 117973526 4396 + lincRNA gene RIKEN cDNA 4921521D15 gene
D3Jcs19 3 117998321 to 117998613 292 DNA segment DNA segment, Chr 3, John C. Schimenti 19
Cpgi13748 3 118425803 to 118426370 567 CpG island CpG island 13748
Tssr31405 3 118430041 to 118430074 33 + TSS region transcription start site region 31405
Cpgi13749 3 118430242 to 118430600 358 CpG island CpG island 13749
Tssr31406 3 118430299 to 118430368 69 + TSS region transcription start site region 31406
Tssr31407 3 118430416 to 118430477 61 + TSS region transcription start site region 31407
Tssr31408 3 118431419 to 118431465 46 + TSS region transcription start site region 31408
Tssr31409 3 118431493 to 118431519 26 + TSS region transcription start site region 31409
Tssr31410 3 118431526 to 118431538 12 + TSS region transcription start site region 31410
Cpgi13750 3 118433472 to 118434010 538 CpG island CpG island 13750
Mir137 3 118433857 to 118433929 72 + miRNA gene microRNA 137
Tssr31411 3 118433933 to 118433942 9 + TSS region transcription start site region 31411
Cpgi13751 3 118434361 to 118434614 253 CpG island CpG island 13751
Gm24155 3 118434721 to 118434830 109 + miRNA gene predicted gene, 24155
Gm9916 3 118434770 to 118435997 1227 + lincRNA gene predicted gene 9916
D3Mit142 3 118442657 to 118442800 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 142
Tssr31412 3 118456319 to 118456325 6 + TSS region transcription start site region 31412
Gm26871 3 118504296 to 118539644 35348 + lncRNA gene predicted gene, 26871
Tssr31413 3 118522035 to 118522039 4 + TSS region transcription start site region 31413
Gm37773 3 118526151 to 118528270 2119 + unclassified gene predicted gene, 37773
Gm37928 3 118530883 to 118535013 4130 + unclassified gene predicted gene, 37928
Gm32444 3 118537021 to 118540531 3510 + unclassified non-coding RNA gene predicted gene, 32444
Cpgi13752 3 118562032 to 118562462 430 CpG island CpG island 13752
Dpyd 3 118562129 to 119432924 870795 + protein coding gene dihydropyrimidine dehydrogenase
Tssr31414 3 118562145 to 118562156 11 + TSS region transcription start site region 31414
Tssr31415 3 118562162 to 118562188 26 + TSS region transcription start site region 31415
Tssr31416 3 118609154 to 118609158 4 + TSS region transcription start site region 31416
D3Mit79 3 118620862 to 118621011 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 79
Tssr1030 3 118663510 to 118663512 2 + TSS region transcription start site region 1030