Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:116477092-116847104

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rtca 3 116488963 to 116508203 19240 - protein coding gene RNA 3'-terminal phosphate cyclase
Gm26530 3 116488966 to 116493358 4392 + lincRNA gene predicted gene, 26530
Cpgi13735 3 116507572 to 116508329 757 CpG island CpG island 13735
Tssr35313 3 116508035 to 116508070 35 - TSS region transcription start site region 35313
Tssr35314 3 116508071 to 116508119 48 - TSS region transcription start site region 35314
D3Ertd547e 3 116509733 to 116509935 202 DNA segment DNA segment, Chr 3, ERATO Doi 547, expressed
Cpgi13736 3 116512981 to 116513555 574 CpG island CpG island 13736
Dbt 3 116513075 to 116549981 36906 + protein coding gene dihydrolipoamide branched chain transacylase E2
Tssr31352 3 116513094 to 116513144 50 + TSS region transcription start site region 31352
Gm4596 3 116528137 to 116528578 441 - pseudogene predicted gene 4596
Gm43651 3 116532149 to 116532587 438 + unclassified gene predicted gene 43651
D3Mit300 3 116534284 to 116534433 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 300
Tssr31353 3 116534758 to 116534772 14 + TSS region transcription start site region 31353
D3Mit249 3 116546642 to 116546943 301 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 249
Tssr31354 3 116549172 to 116549184 12 + TSS region transcription start site region 31354
Gm9761 3 116560935 to 116561426 491 - pseudogene predicted gene 9761
Tssr35315 3 116561542 to 116561543 1 - TSS region transcription start site region 35315
Tssr31355 3 116562943 to 116562964 21 + TSS region transcription start site region 31355
Tssr31356 3 116562965 to 116563004 39 + TSS region transcription start site region 31356
Lrrc39 3 116562973 to 116583134 20161 + protein coding gene leucine rich repeat containing 39
Tssr31357 3 116563008 to 116563027 19 + TSS region transcription start site region 31357
Tssr31358 3 116563051 to 116563063 12 + TSS region transcription start site region 31358
Tssr31359 3 116563064 to 116563088 24 + TSS region transcription start site region 31359
Gm42940 3 116572063 to 116574424 2361 - unclassified gene predicted gene 42940
Trmt13 3 116581093 to 116614587 33494 - protein coding gene tRNA methyltransferase 13
Cpgi13737 3 116594476 to 116595532 1056 CpG island CpG island 13737
Tssr35316 3 116594816 to 116594841 25 - TSS region transcription start site region 35316
Tssr35317 3 116594848 to 116594898 50 - TSS region transcription start site region 35317
Tssr31360 3 116594959 to 116595031 72 + TSS region transcription start site region 31360
Sass6 3 116594982 to 116631004 36022 + protein coding gene SAS-6 centriolar assembly protein
Tssr31361 3 116598187 to 116598204 17 + TSS region transcription start site region 31361
Tssr31362 3 116598212 to 116598234 22 + TSS region transcription start site region 31362
Gm42893 3 116629173 to 116630984 1811 - antisense lncRNA gene predicted gene 42893
Tssr31363 3 116629262 to 116629266 4 + TSS region transcription start site region 31363
Mfsd14a 3 116631164 to 116662677 31513 - protein coding gene major facilitator superfamily domain containing 14A
Gm42457 3 116631671 to 116632209 538 + antisense lncRNA gene predicted gene 42457
Tssr35318 3 116634973 to 116634984 11 - TSS region transcription start site region 35318
Tssr35319 3 116634990 to 116635024 34 - TSS region transcription start site region 35319
Gm43191 3 116641902 to 116681260 39358 - protein coding gene predicted gene 43191
Tssr35320 3 116645684 to 116645714 30 - TSS region transcription start site region 35320
Tssr35321 3 116645718 to 116645730 12 - TSS region transcription start site region 35321
Tssr35322 3 116655570 to 116655575 5 - TSS region transcription start site region 35322
Tssr35323 3 116659335 to 116659341 6 - TSS region transcription start site region 35323
Tssr31364 3 116661761 to 116661775 14 + TSS region transcription start site region 31364
Cpgi13738 3 116661770 to 116663028 1258 CpG island CpG island 13738
Tssr35324 3 116662092 to 116662104 12 - TSS region transcription start site region 35324
Tssr35325 3 116662270 to 116662339 69 - TSS region transcription start site region 35325
Tssr35326 3 116662537 to 116662548 11 - TSS region transcription start site region 35326
Tssr35327 3 116662554 to 116662570 16 - TSS region transcription start site region 35327
Tssr35328 3 116662571 to 116662584 13 - TSS region transcription start site region 35328
Tssr35329 3 116662590 to 116662641 51 - TSS region transcription start site region 35329
Tssr35330 3 116662643 to 116662654 11 - TSS region transcription start site region 35330
4930512P04Rik 3 116663732 to 116664155 423 + lincRNA gene RIKEN cDNA 4930512P04 gene
Slc35a3 3 116669470 to 116712831 43361 - protein coding gene solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
Gm40126 3 116690388 to 116693380 2992 - lncRNA gene predicted gene, 40126
Cpgi13739 3 116711636 to 116712509 873 CpG island CpG island 13739
Tssr35331 3 116711775 to 116711784 9 - TSS region transcription start site region 35331
Tssr35332 3 116711820 to 116711847 27 - TSS region transcription start site region 35332
Tssr35333 3 116711849 to 116711865 16 - TSS region transcription start site region 35333
Tssr35334 3 116711866 to 116711882 16 - TSS region transcription start site region 35334
Tssr35335 3 116712198 to 116712240 42 - TSS region transcription start site region 35335
Tssr35336 3 116712241 to 116712269 28 - TSS region transcription start site region 35336
Tssr35337 3 116712460 to 116712510 50 - TSS region transcription start site region 35337
Tssr35338 3 116712644 to 116712655 11 - TSS region transcription start site region 35338
Tssr35339 3 116712696 to 116712723 27 - TSS region transcription start site region 35339
Agl 3 116739999 to 116808166 68167 - protein coding gene amylo-1,6-glucosidase, 4-alpha-glucanotransferase
D3Mit314 3 116782995 to 116783194 199 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 314
Tssr35340 3 116804471 to 116804474 3 - TSS region transcription start site region 35340
Tssr35341 3 116807688 to 116807693 5 - TSS region transcription start site region 35341
Tssr35342 3 116807706 to 116807711 5 - TSS region transcription start site region 35342
Cpgi13740 3 116807724 to 116808695 971 CpG island CpG island 13740
Tssr35343 3 116807727 to 116807730 3 - TSS region transcription start site region 35343
Tssr35344 3 116807733 to 116807755 22 - TSS region transcription start site region 35344
Tssr35345 3 116807763 to 116807779 16 - TSS region transcription start site region 35345
Tssr35346 3 116807782 to 116807789 7 - TSS region transcription start site region 35346
Tssr35347 3 116807802 to 116807866 64 - TSS region transcription start site region 35347
Tssr35348 3 116807880 to 116807889 9 - TSS region transcription start site region 35348
Tssr35349 3 116807903 to 116807914 11 - TSS region transcription start site region 35349
Tssr35350 3 116807933 to 116807961 28 - TSS region transcription start site region 35350
Tssr35351 3 116807969 to 116807976 7 - TSS region transcription start site region 35351
Tssr35352 3 116807982 to 116807998 16 - TSS region transcription start site region 35352
Tssr35353 3 116808051 to 116808061 10 - TSS region transcription start site region 35353
Tssr35354 3 116808067 to 116808136 69 - TSS region transcription start site region 35354
Tssr35355 3 116808137 to 116808148 11 - TSS region transcription start site region 35355
Tssr35356 3 116808178 to 116808198 20 - TSS region transcription start site region 35356
Tssr35357 3 116808218 to 116808268 50 - TSS region transcription start site region 35357
Tssr31365 3 116808262 to 116808285 23 + TSS region transcription start site region 31365
Gm43520 3 116818815 to 116818978 163 + unclassified gene predicted gene 43520
Gm43521 3 116822294 to 116822548 254 - unclassified gene predicted gene 43521
Gm40127 3 116823005 to 116829790 6785 + lncRNA gene predicted gene, 40127
Tssr31366 3 116829526 to 116829544 18 + TSS region transcription start site region 31366
Gm40128 3 116835357 to 116841513 6156 - lncRNA gene predicted gene, 40128
Tssr31367 3 116844543 to 116844547 4 + TSS region transcription start site region 31367
Gm29736 3 116844579 to 116844958 379 + pseudogene predicted gene, 29736
Tssr31368 3 116845145 to 116845163 18 + TSS region transcription start site region 31368
Gm43542 3 116846946 to 116847324 378 + pseudogene predicted gene 43542