Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:116172553-116524032

38 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tssr31351	3	116184668 to 116184680	12	+	TSS region	transcription start site region 31351
Gm31651	3	116200408 to 116202713	2305	+	lincRNA gene	predicted gene, 31651
Gpr88	3	116249654 to 116253498	3844	-	protein coding gene	G-protein coupled receptor 88
Cpgi13728	3	116251283 to 116252831	1548		CpG island	CpG island 13728
Tssr35300	3	116252737 to 116252760	23	-	TSS region	transcription start site region 35300
Tssr35301	3	116252769 to 116252805	36	-	TSS region	transcription start site region 35301
Tssr35302	3	116253411 to 116253433	22	-	TSS region	transcription start site region 35302
Tssr35303	3	116253467 to 116253483	16	-	TSS region	transcription start site region 35303
Tssr35304	3	116253499 to 116253506	7	-	TSS region	transcription start site region 35304
Gm46839	3	116257944 to 116269982	12038	+	lncRNA gene	predicted gene, 46839
Cdc14a	3	116272553 to 116424032	151479	-	protein coding gene	CDC14 cell division cycle 14A
Cpgi13729	3	116327189 to 116327618	429		CpG island	CpG island 13729
Cpgi13730	3	116337050 to 116337312	262		CpG island	CpG island 13730
Cpgi13731	3	116347575 to 116348090	515		CpG island	CpG island 13731
Gm29151	3	116350103 to 116352888	2785	+	antisense lncRNA gene	predicted gene 29151
Tssr35305	3	116422223 to 116422237	14	-	TSS region	transcription start site region 35305
Cpgi13732	3	116422979 to 116424360	1381		CpG island	CpG island 13732
Tssr35306	3	116423484 to 116423519	35	-	TSS region	transcription start site region 35306
Tssr35307	3	116423750 to 116423757	7	-	TSS region	transcription start site region 35307
Tssr35308	3	116423930 to 116423993	63	-	TSS region	transcription start site region 35308
Tssr35309	3	116424007 to 116424020	13	-	TSS region	transcription start site region 35309
Tssr35310	3	116424110 to 116424125	15	-	TSS region	transcription start site region 35310
Tssr35311	3	116424134 to 116424146	12	-	TSS region	transcription start site region 35311
Gm40125	3	116424155 to 116435432	11277	+	lncRNA gene	predicted gene, 40125
Cpgi13733	3	116424372 to 116424677	305		CpG island	CpG island 13733
Tssr35312	3	116428722 to 116428750	28	-	TSS region	transcription start site region 35312
Gm22361	3	116448389 to 116448564	175	-	snRNA gene	predicted gene, 22361
Cpgi13734	3	116465774 to 116465926	152		CpG island	CpG island 13734
Gm26358	3	116466619 to 116466715	96	+	snoRNA gene	predicted gene, 26358
Rtca	3	116488963 to 116508203	19240	-	protein coding gene	RNA 3'-terminal phosphate cyclase
Gm26530	3	116488966 to 116493358	4392	+	lincRNA gene	predicted gene, 26530
Cpgi13735	3	116507572 to 116508329	757		CpG island	CpG island 13735
Tssr35313	3	116508035 to 116508070	35	-	TSS region	transcription start site region 35313
Tssr35314	3	116508071 to 116508119	48	-	TSS region	transcription start site region 35314
D3Ertd547e	3	116509733 to 116509935	202		DNA segment	DNA segment, Chr 3, ERATO Doi 547, expressed
Cpgi13736	3	116512981 to 116513555	574		CpG island	CpG island 13736
Dbt	3	116513075 to 116549981	36906	+	protein coding gene	dihydrolipoamide branched chain transacylase E2
Tssr31352	3	116513094 to 116513144	50	+	TSS region	transcription start site region 31352