Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:116125103-116577888

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vcam1 3 116110020 to 116129688 19668 - protein coding gene vascular cell adhesion molecule 1
Gm43109 3 116128451 to 116141016 12565 + antisense lncRNA gene predicted gene 43109
Tssr35297 3 116129375 to 116129387 12 - TSS region transcription start site region 35297
Tssr35298 3 116129449 to 116129464 15 - TSS region transcription start site region 35298
Tssr35299 3 116129615 to 116129624 9 - TSS region transcription start site region 35299
Tbs1 3 116130456 to 116130601 145 QTL tuberculosis severity 1
D3Mit215 3 116130456 to 116130601 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 215
5330425B07Rik 3 116148110 to 116149136 1026 + lncRNA gene RIKEN cDNA 5330425B07 gene
Gm26544 3 116150479 to 116165821 15342 + lincRNA gene predicted gene, 26544
D3Mit346 3 116157389 to 116157514 125 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 346
hem6 3 116157514 to 96641414 -19516100 heritable phenotypic marker haematopoietic 6
gro57 3 116157514 to 96641414 -19516100 heritable phenotypic marker growth/size 57
Tssr31351 3 116184668 to 116184680 12 + TSS region transcription start site region 31351
Gm31651 3 116200408 to 116202713 2305 + lincRNA gene predicted gene, 31651
Gpr88 3 116249654 to 116253498 3844 - protein coding gene G-protein coupled receptor 88
Cpgi13728 3 116251283 to 116252831 1548 CpG island CpG island 13728
Tssr35300 3 116252737 to 116252760 23 - TSS region transcription start site region 35300
Tssr35301 3 116252769 to 116252805 36 - TSS region transcription start site region 35301
Tssr35302 3 116253411 to 116253433 22 - TSS region transcription start site region 35302
Tssr35303 3 116253467 to 116253483 16 - TSS region transcription start site region 35303
Tssr35304 3 116253499 to 116253506 7 - TSS region transcription start site region 35304
Gm46839 3 116257944 to 116269982 12038 + lncRNA gene predicted gene, 46839
Cdc14a 3 116272553 to 116424032 151479 - protein coding gene CDC14 cell division cycle 14A
Cpgi13729 3 116327189 to 116327618 429 CpG island CpG island 13729
Cpgi13730 3 116337050 to 116337312 262 CpG island CpG island 13730
Cpgi13731 3 116347575 to 116348090 515 CpG island CpG island 13731
Gm29151 3 116350103 to 116352888 2785 + antisense lncRNA gene predicted gene 29151
Tssr35305 3 116422223 to 116422237 14 - TSS region transcription start site region 35305
Cpgi13732 3 116422979 to 116424360 1381 CpG island CpG island 13732
Tssr35306 3 116423484 to 116423519 35 - TSS region transcription start site region 35306
Tssr35307 3 116423750 to 116423757 7 - TSS region transcription start site region 35307
Tssr35308 3 116423930 to 116423993 63 - TSS region transcription start site region 35308
Tssr35309 3 116424007 to 116424020 13 - TSS region transcription start site region 35309
Tssr35310 3 116424110 to 116424125 15 - TSS region transcription start site region 35310
Tssr35311 3 116424134 to 116424146 12 - TSS region transcription start site region 35311
Gm40125 3 116424155 to 116435432 11277 + lncRNA gene predicted gene, 40125
Cpgi13733 3 116424372 to 116424677 305 CpG island CpG island 13733
Tssr35312 3 116428722 to 116428750 28 - TSS region transcription start site region 35312
Gm22361 3 116448389 to 116448564 175 - snRNA gene predicted gene, 22361
Cpgi13734 3 116465774 to 116465926 152 CpG island CpG island 13734
Gm26358 3 116466619 to 116466715 96 + snoRNA gene predicted gene, 26358
Rtca 3 116488963 to 116508203 19240 - protein coding gene RNA 3'-terminal phosphate cyclase
Gm26530 3 116488966 to 116493358 4392 + lincRNA gene predicted gene, 26530
Cpgi13735 3 116507572 to 116508329 757 CpG island CpG island 13735
Tssr35313 3 116508035 to 116508070 35 - TSS region transcription start site region 35313
Tssr35314 3 116508071 to 116508119 48 - TSS region transcription start site region 35314
D3Ertd547e 3 116509733 to 116509935 202 DNA segment DNA segment, Chr 3, ERATO Doi 547, expressed
Cpgi13736 3 116512981 to 116513555 574 CpG island CpG island 13736
Dbt 3 116513075 to 116549981 36906 + protein coding gene dihydrolipoamide branched chain transacylase E2
Tssr31352 3 116513094 to 116513144 50 + TSS region transcription start site region 31352
Gm4596 3 116528137 to 116528578 441 - pseudogene predicted gene 4596
Gm43651 3 116532149 to 116532587 438 + unclassified gene predicted gene 43651
D3Mit300 3 116534284 to 116534433 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 300
Tssr31353 3 116534758 to 116534772 14 + TSS region transcription start site region 31353
D3Mit249 3 116546642 to 116546943 301 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 249
Tssr31354 3 116549172 to 116549184 12 + TSS region transcription start site region 31354
Gm9761 3 116560935 to 116561426 491 - pseudogene predicted gene 9761
Tssr35315 3 116561542 to 116561543 1 - TSS region transcription start site region 35315
Tssr31355 3 116562943 to 116562964 21 + TSS region transcription start site region 31355
Tssr31356 3 116562965 to 116563004 39 + TSS region transcription start site region 31356
Lrrc39 3 116562973 to 116583134 20161 + protein coding gene leucine rich repeat containing 39
Tssr31357 3 116563008 to 116563027 19 + TSS region transcription start site region 31357
Tssr31358 3 116563051 to 116563063 12 + TSS region transcription start site region 31358
Tssr31359 3 116563064 to 116563088 24 + TSS region transcription start site region 31359
Gm42940 3 116572063 to 116574424 2361 - unclassified gene predicted gene 42940