Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:116008110-116289136

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13727 3 116006781 to 116008119 1338 CpG island CpG island 13727
Extl2 3 116007462 to 116029017 21555 + protein coding gene exostoses (multiple)-like 2
Tssr31348 3 116008325 to 116008372 47 + TSS region transcription start site region 31348
Tssr31349 3 116008375 to 116008402 27 + TSS region transcription start site region 31349
Tssr31350 3 116008404 to 116008415 11 + TSS region transcription start site region 31350
Gm26344 3 116065788 to 116065919 131 - snoRNA gene predicted gene, 26344
Gm31384 3 116093593 to 116102373 8780 + lncRNA gene predicted gene, 31384
Vcam1 3 116110020 to 116129688 19668 - protein coding gene vascular cell adhesion molecule 1
Tssr35296 3 116114556 to 116114569 13 - TSS region transcription start site region 35296
Gm43109 3 116128451 to 116141016 12565 + antisense lncRNA gene predicted gene 43109
Tssr35297 3 116129375 to 116129387 12 - TSS region transcription start site region 35297
Tssr35298 3 116129449 to 116129464 15 - TSS region transcription start site region 35298
Tssr35299 3 116129615 to 116129624 9 - TSS region transcription start site region 35299
D3Mit215 3 116130456 to 116130601 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 215
Tbs1 3 116130456 to 116130601 145 QTL tuberculosis severity 1
5330425B07Rik 3 116148110 to 116149136 1026 + lncRNA gene RIKEN cDNA 5330425B07 gene
Gm26544 3 116150479 to 116165821 15342 + lincRNA gene predicted gene, 26544
D3Mit346 3 116157389 to 116157514 125 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 346
gro57 3 116157514 to 96641414 -19516100 heritable phenotypic marker growth/size 57
hem6 3 116157514 to 96641414 -19516100 heritable phenotypic marker haematopoietic 6
Tssr31351 3 116184668 to 116184680 12 + TSS region transcription start site region 31351
Gm31651 3 116200408 to 116202713 2305 + lincRNA gene predicted gene, 31651
Gpr88 3 116249654 to 116253498 3844 - protein coding gene G-protein coupled receptor 88
Cpgi13728 3 116251283 to 116252831 1548 CpG island CpG island 13728
Tssr35300 3 116252737 to 116252760 23 - TSS region transcription start site region 35300
Tssr35301 3 116252769 to 116252805 36 - TSS region transcription start site region 35301
Tssr35302 3 116253411 to 116253433 22 - TSS region transcription start site region 35302
Tssr35303 3 116253467 to 116253483 16 - TSS region transcription start site region 35303
Tssr35304 3 116253499 to 116253506 7 - TSS region transcription start site region 35304
Gm46839 3 116257944 to 116269982 12038 + lncRNA gene predicted gene, 46839
Cdc14a 3 116272553 to 116424032 151479 - protein coding gene CDC14 cell division cycle 14A