Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:115847462-116189017

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A930005H10Rik 3 115881581 to 115888130 6549 - lncRNA gene RIKEN cDNA A930005H10 gene
Tssr31338 3 115885805 to 115885815 10 + TSS region transcription start site region 31338
Cpgi13726 3 115887759 to 115888531 772 CpG island CpG island 13726
Tssr31339 3 115887871 to 115887882 11 + TSS region transcription start site region 31339
Tssr35285 3 115887879 to 115887891 12 - TSS region transcription start site region 35285
Tssr35286 3 115888001 to 115888012 11 - TSS region transcription start site region 35286
Tssr35287 3 115888037 to 115888054 17 - TSS region transcription start site region 35287
Tssr35288 3 115888055 to 115888082 27 - TSS region transcription start site region 35288
Tssr35289 3 115888086 to 115888137 51 - TSS region transcription start site region 35289
Tssr31340 3 115888098 to 115888103 5 + TSS region transcription start site region 31340
Tssr31341 3 115888139 to 115888200 61 + TSS region transcription start site region 31341
Dph5 3 115888165 to 115929323 41158 + protein coding gene diphthamide biosynthesis 5
Tssr31342 3 115888208 to 115888233 25 + TSS region transcription start site region 31342
Tssr31343 3 115888242 to 115888250 8 + TSS region transcription start site region 31343
A230060L02Rik 3 115889260 to 115892274 3014 unclassified gene RIKEN cDNA A230060L02 gene
Gm42687 3 115910370 to 115910533 163 + unclassified gene predicted gene 42687
Gm43107 3 115913809 to 115914063 254 - unclassified gene predicted gene 43107
Gm43108 3 115913890 to 115914182 292 + unclassified gene predicted gene 43108
Tssr35290 3 115933704 to 115933707 3 - TSS region transcription start site region 35290
Slc30a7 3 115938973 to 116007406 68433 - protein coding gene solute carrier family 30 (zinc transporter), member 7
Gm43106 3 115942482 to 115943118 636 + pseudogene predicted gene 43106
Gm6649 3 115943103 to 115944264 1161 + pseudogene predicted gene 6649
Tssr35291 3 115974331 to 115974336 5 - TSS region transcription start site region 35291
Tssr31344 3 115974620 to 115974635 15 + TSS region transcription start site region 31344
Mir669n 3 115979902 to 115979955 53 + miRNA gene microRNA 669n
Tssr35292 3 115989310 to 115989339 29 - TSS region transcription start site region 35292
Bmiq5 3 116000000 to 41000000 -75000000 QTL body mass index QTL 5
Tssr35293 3 116006447 to 116006451 4 - TSS region transcription start site region 35293
Cpgi13727 3 116006781 to 116008119 1338 CpG island CpG island 13727
Tssr35294 3 116007340 to 116007396 56 - TSS region transcription start site region 35294
Tssr35295 3 116007399 to 116007411 12 - TSS region transcription start site region 35295
Tssr31345 3 116007457 to 116007540 83 + TSS region transcription start site region 31345
Extl2 3 116007462 to 116029017 21555 + protein coding gene exostoses (multiple)-like 2
Tssr31346 3 116007735 to 116007765 30 + TSS region transcription start site region 31346
Tssr31347 3 116007840 to 116007847 7 + TSS region transcription start site region 31347
Tssr31348 3 116008325 to 116008372 47 + TSS region transcription start site region 31348
Tssr31349 3 116008375 to 116008402 27 + TSS region transcription start site region 31349
Tssr31350 3 116008404 to 116008415 11 + TSS region transcription start site region 31350
Gm26344 3 116065788 to 116065919 131 - snoRNA gene predicted gene, 26344
Gm31384 3 116093593 to 116102373 8780 + lncRNA gene predicted gene, 31384
Vcam1 3 116110020 to 116129688 19668 - protein coding gene vascular cell adhesion molecule 1
Tssr35296 3 116114556 to 116114569 13 - TSS region transcription start site region 35296
Gm43109 3 116128451 to 116141016 12565 + antisense lncRNA gene predicted gene 43109
Tssr35297 3 116129375 to 116129387 12 - TSS region transcription start site region 35297
Tssr35298 3 116129449 to 116129464 15 - TSS region transcription start site region 35298
Tssr35299 3 116129615 to 116129624 9 - TSS region transcription start site region 35299
Tbs1 3 116130456 to 116130601 145 QTL tuberculosis severity 1
D3Mit215 3 116130456 to 116130601 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 215
5330425B07Rik 3 116148110 to 116149136 1026 + lncRNA gene RIKEN cDNA 5330425B07 gene
Gm26544 3 116150479 to 116165821 15342 + lincRNA gene predicted gene, 26544
D3Mit346 3 116157389 to 116157514 125 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 346
hem6 3 116157514 to 96641414 -19516100 heritable phenotypic marker haematopoietic 6
gro57 3 116157514 to 96641414 -19516100 heritable phenotypic marker growth/size 57
Tssr31351 3 116184668 to 116184680 12 + TSS region transcription start site region 31351