Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:115838973-116107406

43 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Mvb3	3	115841635 to 115841734	99		QTL	modifier of vibrator 3
D3Mit315	3	115841635 to 115841734	99		DNA segment	DNA Segment, Chr 3, Massachusetts Institute of Technology 315
Modn1	3	115841635 to 115841734	99		QTL	modifier of Dstn neovascularization 1
A930005H10Rik	3	115881581 to 115888130	6549	-	lncRNA gene	RIKEN cDNA A930005H10 gene
Tssr31338	3	115885805 to 115885815	10	+	TSS region	transcription start site region 31338
Cpgi13726	3	115887759 to 115888531	772		CpG island	CpG island 13726
Tssr31339	3	115887871 to 115887882	11	+	TSS region	transcription start site region 31339
Tssr35285	3	115887879 to 115887891	12	-	TSS region	transcription start site region 35285
Tssr35286	3	115888001 to 115888012	11	-	TSS region	transcription start site region 35286
Tssr35287	3	115888037 to 115888054	17	-	TSS region	transcription start site region 35287
Tssr35288	3	115888055 to 115888082	27	-	TSS region	transcription start site region 35288
Tssr35289	3	115888086 to 115888137	51	-	TSS region	transcription start site region 35289
Tssr31340	3	115888098 to 115888103	5	+	TSS region	transcription start site region 31340
Tssr31341	3	115888139 to 115888200	61	+	TSS region	transcription start site region 31341
Dph5	3	115888165 to 115929323	41158	+	protein coding gene	diphthamide biosynthesis 5
Tssr31342	3	115888208 to 115888233	25	+	TSS region	transcription start site region 31342
Tssr31343	3	115888242 to 115888250	8	+	TSS region	transcription start site region 31343
A230060L02Rik	3	115889260 to 115892274	3014		unclassified gene	RIKEN cDNA A230060L02 gene
Gm42687	3	115910370 to 115910533	163	+	unclassified gene	predicted gene 42687
Gm43107	3	115913809 to 115914063	254	-	unclassified gene	predicted gene 43107
Gm43108	3	115913890 to 115914182	292	+	unclassified gene	predicted gene 43108
Tssr35290	3	115933704 to 115933707	3	-	TSS region	transcription start site region 35290
Slc30a7	3	115938973 to 116007406	68433	-	protein coding gene	solute carrier family 30 (zinc transporter), member 7
Gm43106	3	115942482 to 115943118	636	+	pseudogene	predicted gene 43106
Gm6649	3	115943103 to 115944264	1161	+	pseudogene	predicted gene 6649
Tssr35291	3	115974331 to 115974336	5	-	TSS region	transcription start site region 35291
Tssr31344	3	115974620 to 115974635	15	+	TSS region	transcription start site region 31344
Mir669n	3	115979902 to 115979955	53	+	miRNA gene	microRNA 669n
Tssr35292	3	115989310 to 115989339	29	-	TSS region	transcription start site region 35292
Bmiq5	3	116000000 to 41000000	-75000000		QTL	body mass index QTL 5
Tssr35293	3	116006447 to 116006451	4	-	TSS region	transcription start site region 35293
Cpgi13727	3	116006781 to 116008119	1338		CpG island	CpG island 13727
Tssr35294	3	116007340 to 116007396	56	-	TSS region	transcription start site region 35294
Tssr35295	3	116007399 to 116007411	12	-	TSS region	transcription start site region 35295
Tssr31345	3	116007457 to 116007540	83	+	TSS region	transcription start site region 31345
Extl2	3	116007462 to 116029017	21555	+	protein coding gene	exostoses (multiple)-like 2
Tssr31346	3	116007735 to 116007765	30	+	TSS region	transcription start site region 31346
Tssr31347	3	116007840 to 116007847	7	+	TSS region	transcription start site region 31347
Tssr31348	3	116008325 to 116008372	47	+	TSS region	transcription start site region 31348
Tssr31349	3	116008375 to 116008402	27	+	TSS region	transcription start site region 31349
Tssr31350	3	116008404 to 116008415	11	+	TSS region	transcription start site region 31350
Gm26344	3	116065788 to 116065919	131	-	snoRNA gene	predicted gene, 26344
Gm31384	3	116093593 to 116102373	8780	+	lncRNA gene	predicted gene, 31384